Wall clock time and date at job start Tue Mar 31 2020 10:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48503 * 109.47130 * 270.00165 * 3 2 1 5 5 H 1.48500 * 109.47388 * 30.00012 * 3 2 1 6 6 H 1.48500 * 109.47438 * 149.99886 * 3 2 1 7 7 C 1.37879 * 120.00315 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.84971 * 180.02562 * 7 2 1 9 9 C 1.53235 * 108.53109 * 231.32370 * 8 7 2 10 10 C 1.52951 * 109.41904 * 305.37781 * 9 8 7 11 11 H 1.09000 * 109.40572 * 303.48672 * 10 9 8 12 12 N 1.46494 * 109.42604 * 183.69258 * 10 9 8 13 13 C 1.39037 * 119.99944 * 84.63891 * 12 10 9 14 14 C 1.38822 * 119.66538 * 0.02562 * 13 12 10 15 15 C 1.39130 * 119.00633 * 180.02562 * 14 13 12 16 16 N 1.39198 * 120.82451 * 179.97438 * 15 14 13 17 17 C 1.39694 * 118.34898 * 359.97438 * 15 14 13 18 18 C 1.50698 * 120.37816 * 179.97438 * 17 15 14 19 19 F 1.39901 * 109.46899 * 179.97438 * 18 17 15 20 20 F 1.39899 * 109.46991 * 299.99647 * 18 17 15 21 21 F 1.39903 * 109.47535 * 59.99823 * 18 17 15 22 22 C 1.37726 * 119.23472 * 0.02562 * 17 15 14 23 23 N 1.32086 * 120.93629 * 359.72555 * 22 17 15 24 24 C 1.52965 * 109.81766 * 63.57924 * 10 9 8 25 25 C 1.51265 * 120.84903 * 359.97438 * 7 2 1 26 26 H 0.96999 * 119.99963 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.62837 * 351.03658 * 8 7 2 28 28 H 1.09002 * 109.62253 * 111.42142 * 8 7 2 29 29 H 1.08995 * 109.48217 * 65.35783 * 9 8 7 30 30 H 1.09003 * 109.47623 * 185.39047 * 9 8 7 31 31 H 0.97000 * 120.00067 * 264.63788 * 12 10 9 32 32 H 1.08003 * 120.49981 * 0.02562 * 14 13 12 33 33 H 0.97000 * 119.99706 * 359.97438 * 16 15 14 34 34 H 0.96993 * 119.99571 * 179.97438 * 16 15 14 35 35 H 1.08001 * 119.53062 * 180.02562 * 22 17 15 36 36 H 1.09002 * 109.48383 * 176.43545 * 24 10 9 37 37 H 1.08999 * 109.47882 * 56.40908 * 24 10 9 38 38 H 1.09007 * 109.62320 * 8.95948 * 25 7 2 39 39 H 1.09002 * 109.78860 * 248.48402 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 6 3.5172 -1.2164 0.0011 9 6 3.9911 -2.1317 -1.1327 10 6 3.3404 -3.5076 -0.9813 11 1 3.5742 -3.9123 0.0034 12 7 3.8605 -4.4086 -2.0127 13 6 5.0546 -5.0894 -1.8033 14 6 5.7480 -4.9104 -0.6140 15 6 6.9417 -5.5980 -0.4191 16 7 7.6681 -5.4464 0.7586 17 6 7.3932 -6.4443 -1.4347 18 6 8.6806 -7.2107 -1.2721 19 9 8.9122 -7.9813 -2.4165 20 9 9.7382 -6.3128 -1.0920 21 9 8.5861 -8.0498 -0.1566 22 6 6.6488 -6.5694 -2.5867 23 7 5.5167 -5.9062 -2.7389 24 6 1.8234 -3.3833 -1.1327 25 6 1.2678 -2.5151 0.0017 26 1 -0.4850 0.8400 -0.0004 27 1 3.8983 -0.2079 -0.1589 28 1 3.8773 -1.5965 0.9571 29 1 3.7072 -1.6990 -2.0920 30 1 5.0753 -2.2352 -1.0871 31 1 3.3718 -4.5303 -2.8417 32 1 5.3667 -4.2474 0.1485 33 1 7.3436 -4.8552 1.4558 34 1 8.4987 -5.9319 0.8820 35 1 6.9931 -7.2227 -3.3747 36 1 1.3711 -4.3740 -1.0871 37 1 1.5905 -2.9211 -2.0920 38 1 0.2037 -2.3410 -0.1579 39 1 1.4170 -3.0200 0.9562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167841318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:06 Heat of formation + Delta-G solvation = -131.512302 kcal Electronic energy + Delta-G solvation = -26455.041231 eV Core-core repulsion = 22174.333104 eV Total energy + Delta-G solvation = -4280.708127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.22682 -47.74894 -47.67228 -40.35483 -37.75574 -35.73349 -34.30651 -32.06059 -30.63994 -30.03804 -29.49154 -27.37873 -25.29801 -23.43405 -22.51572 -21.54482 -21.40302 -19.64852 -18.75169 -18.54405 -18.33782 -17.76566 -17.08254 -16.31814 -15.72844 -15.13673 -14.70171 -14.58031 -14.52162 -14.36400 -14.26022 -14.13770 -13.96401 -13.87060 -13.85012 -13.34555 -13.25148 -12.89824 -12.52000 -12.24474 -11.95486 -11.74309 -11.64200 -11.16273 -10.99140 -10.79739 -10.35673 -10.16869 -10.01146 -9.59065 -9.50312 -9.09861 -8.80285 -8.56877 -8.30288 -7.65579 -6.20336 -4.12255 1.18805 1.56556 2.67219 3.19427 3.29212 3.29958 3.30453 3.48710 3.80061 3.90033 3.99383 4.29643 4.44567 4.58955 5.03952 5.09876 5.22180 5.46115 5.52257 5.69491 5.71338 5.87121 6.00748 6.24597 6.35242 6.44221 6.58576 6.70063 6.72044 6.87805 6.95712 7.04338 7.26931 7.28698 7.40135 7.54178 7.59021 7.67603 7.81554 8.25899 8.28780 8.85611 9.44130 10.89045 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.026702 B = 0.003077 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.363099 B = 9098.199116 C = 9543.273794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.493 4.493 8 C -0.013 4.013 9 C -0.120 4.120 10 C 0.159 3.841 11 H 0.074 0.926 12 N -0.703 5.703 13 C 0.464 3.536 14 C -0.323 4.323 15 C 0.333 3.667 16 N -0.857 5.857 17 C -0.387 4.387 18 C 0.525 3.475 19 F -0.180 7.180 20 F -0.185 7.185 21 F -0.185 7.185 22 C 0.239 3.761 23 N -0.578 5.578 24 C -0.114 4.114 25 C 0.014 3.986 26 H 0.265 0.735 27 H 0.032 0.968 28 H 0.017 0.983 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.403 0.597 32 H 0.143 0.857 33 H 0.408 0.592 34 H 0.399 0.601 35 H 0.162 0.838 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.564 -12.121 -1.342 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.512 4.512 8 C -0.051 4.051 9 C -0.159 4.159 10 C 0.055 3.945 11 H 0.092 0.908 12 N -0.328 5.328 13 C 0.227 3.773 14 C -0.354 4.354 15 C 0.217 3.783 16 N -0.395 5.395 17 C -0.400 4.400 18 C 0.471 3.529 19 F -0.161 7.161 20 F -0.166 7.166 21 F -0.166 7.166 22 C 0.076 3.924 23 N -0.298 5.298 24 C -0.153 4.153 25 C -0.024 4.024 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.238 0.762 32 H 0.160 0.840 33 H 0.238 0.762 34 H 0.229 0.771 35 H 0.179 0.821 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 13.764 -11.918 -1.926 18.308 hybrid contribution 1.189 0.924 0.737 1.676 sum 14.952 -10.994 -1.189 18.597 Atomic orbital electron populations 1.69824 1.06185 1.27110 1.49343 1.24845 0.94711 0.98630 0.94358 0.86663 0.79926 0.83270 0.78514 1.20369 1.21576 1.19209 1.20005 0.89271 0.91467 1.50446 1.19715 0.96731 0.95158 0.93464 1.22040 0.97103 0.95292 1.01450 1.21203 0.95227 0.88620 0.89422 0.90796 1.45347 1.20548 1.45258 1.21658 1.18276 0.85674 0.85536 0.87783 1.20745 0.99087 1.13524 1.02007 1.17171 0.88928 0.87754 0.84437 1.42548 1.27135 1.52303 1.17482 1.19997 1.02035 1.15366 1.02570 1.17999 0.84384 0.77173 0.73393 1.93131 1.95322 1.76750 1.50898 1.93188 1.60500 1.67901 1.95027 1.93186 1.96431 1.73213 1.53801 1.21968 0.86751 0.90882 0.92808 1.67443 1.16141 1.14212 1.32026 1.21945 0.91807 0.98912 1.02636 1.19339 0.98882 0.92676 0.91480 0.92458 0.94948 0.96430 0.92538 0.94452 0.76160 0.83957 0.76213 0.77107 0.82055 0.94339 0.92463 0.91987 0.97578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 12.73 55.43 0.71 -23.76 16 2 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 20.26 27.27 -169.99 -4.64 15.62 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -5.89 6.46 56.52 0.37 -5.53 16 7 C -0.49 -12.11 5.51 -98.92 -0.55 -12.66 16 8 C -0.01 -0.27 5.59 -27.48 -0.15 -0.42 16 9 C -0.12 -2.24 5.40 -26.64 -0.14 -2.38 16 10 C 0.16 2.74 2.04 -67.98 -0.14 2.60 16 11 H 0.07 1.28 6.45 -51.93 -0.33 0.94 16 12 N -0.70 -10.87 5.24 -54.03 -0.28 -11.16 16 13 C 0.46 7.10 7.62 -155.00 -1.18 5.92 16 14 C -0.32 -4.59 8.67 -39.03 -0.34 -4.92 16 15 C 0.33 4.21 6.71 -83.64 -0.56 3.65 16 16 N -0.86 -8.34 8.87 32.51 0.29 -8.06 16 17 C -0.39 -4.83 5.40 -104.27 -0.56 -5.39 16 18 C 0.53 5.92 2.81 36.00 0.10 6.02 16 19 F -0.18 -1.96 15.99 2.25 0.04 -1.93 16 20 F -0.18 -2.09 16.35 2.25 0.04 -2.05 16 21 F -0.18 -2.07 16.35 2.25 0.04 -2.03 16 22 C 0.24 3.05 10.58 -17.63 -0.19 2.87 16 23 N -0.58 -8.58 10.39 -12.53 -0.13 -8.71 16 24 C -0.11 -2.18 5.40 -26.61 -0.14 -2.33 16 25 C 0.01 0.32 5.97 -27.47 -0.16 0.16 16 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.03 0.70 4.78 -51.93 -0.25 0.45 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 31 H 0.40 5.91 8.72 -40.82 -0.36 5.55 16 32 H 0.14 2.01 6.09 -52.48 -0.32 1.69 16 33 H 0.41 3.28 8.86 -40.82 -0.36 2.91 16 34 H 0.40 3.52 6.47 -40.82 -0.26 3.26 16 35 H 0.16 1.64 7.15 -52.49 -0.38 1.27 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.58 7.07 -51.93 -0.37 1.22 16 39 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -26.89 323.29 -7.50 -34.38 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -4.31 Total: 7.77 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -4.12 Total: -4.96 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.58 Total: -51.68 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.11 Total: -6.01 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.64 Total: 15.62 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.89 -7.50 -34.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.129 kcal (2) G-P(sol) polarization free energy of solvation -26.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds