Wall clock time and date at job start Tue Mar 31 2020 10:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48503 * 109.47130 * 270.00165 * 3 2 1 5 5 H 1.48500 * 109.47388 * 30.00012 * 3 2 1 6 6 H 1.48500 * 109.47438 * 149.99886 * 3 2 1 7 7 C 1.37879 * 120.00315 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.84971 * 180.02562 * 7 2 1 9 9 C 1.53235 * 108.53109 * 231.32370 * 8 7 2 10 10 C 1.52951 * 109.41904 * 305.37781 * 9 8 7 11 11 H 1.09000 * 109.40572 * 303.48672 * 10 9 8 12 12 N 1.46494 * 109.42604 * 183.69258 * 10 9 8 13 13 C 1.39037 * 119.99944 * 84.63891 * 12 10 9 14 14 C 1.38822 * 119.66538 * 0.02562 * 13 12 10 15 15 C 1.39130 * 119.00633 * 180.02562 * 14 13 12 16 16 N 1.39198 * 120.82451 * 179.97438 * 15 14 13 17 17 C 1.39694 * 118.34898 * 359.97438 * 15 14 13 18 18 C 1.50698 * 120.37816 * 179.97438 * 17 15 14 19 19 F 1.39901 * 109.46899 * 179.97438 * 18 17 15 20 20 F 1.39899 * 109.46991 * 299.99647 * 18 17 15 21 21 F 1.39903 * 109.47535 * 59.99823 * 18 17 15 22 22 C 1.37726 * 119.23472 * 0.02562 * 17 15 14 23 23 N 1.32086 * 120.93629 * 359.72555 * 22 17 15 24 24 C 1.52965 * 109.81766 * 63.57924 * 10 9 8 25 25 C 1.51265 * 120.84903 * 359.97438 * 7 2 1 26 26 H 0.96999 * 119.99963 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.62837 * 351.03658 * 8 7 2 28 28 H 1.09002 * 109.62253 * 111.42142 * 8 7 2 29 29 H 1.08995 * 109.48217 * 65.35783 * 9 8 7 30 30 H 1.09003 * 109.47623 * 185.39047 * 9 8 7 31 31 H 0.97000 * 120.00067 * 264.63788 * 12 10 9 32 32 H 1.08003 * 120.49981 * 0.02562 * 14 13 12 33 33 H 0.97000 * 119.99706 * 359.97438 * 16 15 14 34 34 H 0.96993 * 119.99571 * 179.97438 * 16 15 14 35 35 H 1.08001 * 119.53062 * 180.02562 * 22 17 15 36 36 H 1.09002 * 109.48383 * 176.43545 * 24 10 9 37 37 H 1.08999 * 109.47882 * 56.40908 * 24 10 9 38 38 H 1.09007 * 109.62320 * 8.95948 * 25 7 2 39 39 H 1.09002 * 109.78860 * 248.48402 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 6 3.5172 -1.2164 0.0011 9 6 3.9911 -2.1317 -1.1327 10 6 3.3404 -3.5076 -0.9813 11 1 3.5742 -3.9123 0.0034 12 7 3.8605 -4.4086 -2.0127 13 6 5.0546 -5.0894 -1.8033 14 6 5.7480 -4.9104 -0.6140 15 6 6.9417 -5.5980 -0.4191 16 7 7.6681 -5.4464 0.7586 17 6 7.3932 -6.4443 -1.4347 18 6 8.6806 -7.2107 -1.2721 19 9 8.9122 -7.9813 -2.4165 20 9 9.7382 -6.3128 -1.0920 21 9 8.5861 -8.0498 -0.1566 22 6 6.6488 -6.5694 -2.5867 23 7 5.5167 -5.9062 -2.7389 24 6 1.8234 -3.3833 -1.1327 25 6 1.2678 -2.5151 0.0017 26 1 -0.4850 0.8400 -0.0004 27 1 3.8983 -0.2079 -0.1589 28 1 3.8773 -1.5965 0.9571 29 1 3.7072 -1.6990 -2.0920 30 1 5.0753 -2.2352 -1.0871 31 1 3.3718 -4.5303 -2.8417 32 1 5.3667 -4.2474 0.1485 33 1 7.3436 -4.8552 1.4558 34 1 8.4987 -5.9319 0.8820 35 1 6.9931 -7.2227 -3.3747 36 1 1.3711 -4.3740 -1.0871 37 1 1.5905 -2.9211 -2.0920 38 1 0.2037 -2.3410 -0.1579 39 1 1.4170 -3.0200 0.9562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:06 Heat of formation + Delta-G solvation = -147.329478 kcal Electronic energy + Delta-G solvation = -26455.727115 eV Core-core repulsion = 22174.333104 eV Total energy + Delta-G solvation = -4281.394011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.11148 -48.62398 -48.55912 -41.41363 -39.18564 -36.81732 -35.68726 -33.69096 -31.88949 -31.46173 -30.69046 -28.92248 -26.38465 -24.50433 -23.96709 -23.15266 -22.65401 -21.17343 -19.71266 -19.42754 -19.29772 -18.83232 -18.10943 -17.92588 -16.83205 -16.42830 -16.27172 -15.65812 -15.60576 -15.44167 -15.34307 -15.01921 -15.00699 -14.90379 -14.76431 -14.72589 -14.45180 -14.23348 -14.16803 -13.93157 -13.48799 -12.98759 -12.74703 -12.70627 -12.64832 -12.47441 -11.86885 -11.83280 -11.54130 -11.15083 -10.83926 -10.56064 -10.53440 -10.49937 -9.23039 -8.82609 -8.16334 -6.10135 0.15813 0.55424 1.38968 1.43224 1.50453 1.75499 2.14149 2.41484 2.60873 2.75966 2.95102 3.08740 3.13712 3.53879 3.63052 3.96050 4.07050 4.17867 4.24447 4.44638 4.56093 4.68338 4.72574 4.87474 4.93974 4.97830 5.07678 5.08262 5.25424 5.26931 5.39802 5.59881 5.65200 5.76879 5.84344 6.00490 6.20873 6.34614 6.62834 6.65941 6.97192 7.19944 7.48274 8.94445 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.026702 B = 0.003077 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.363099 B = 9098.199116 C = 9543.273794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.023 3.977 3 Si 0.937 3.063 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.252 1.252 7 C -0.498 4.498 8 C -0.015 4.015 9 C -0.111 4.111 10 C 0.175 3.825 11 H 0.079 0.921 12 N -0.704 5.704 13 C 0.450 3.550 14 C -0.333 4.333 15 C 0.334 3.666 16 N -0.843 5.843 17 C -0.389 4.389 18 C 0.532 3.468 19 F -0.176 7.176 20 F -0.183 7.183 21 F -0.183 7.183 22 C 0.236 3.764 23 N -0.594 5.594 24 C -0.104 4.104 25 C 0.010 3.990 26 H 0.262 0.738 27 H 0.030 0.970 28 H 0.028 0.972 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.406 0.594 32 H 0.143 0.857 33 H 0.418 0.582 34 H 0.406 0.594 35 H 0.185 0.815 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.028 0.972 39 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.174 -13.181 -1.323 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.176 1.176 7 C -0.517 4.517 8 C -0.053 4.053 9 C -0.150 4.150 10 C 0.071 3.929 11 H 0.097 0.903 12 N -0.331 5.331 13 C 0.215 3.785 14 C -0.365 4.365 15 C 0.216 3.784 16 N -0.381 5.381 17 C -0.402 4.402 18 C 0.477 3.523 19 F -0.157 7.157 20 F -0.165 7.165 21 F -0.165 7.165 22 C 0.074 3.926 23 N -0.315 5.315 24 C -0.142 4.142 25 C -0.028 4.028 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.161 0.839 33 H 0.249 0.751 34 H 0.237 0.763 35 H 0.202 0.798 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 16.434 -13.002 -1.888 21.041 hybrid contribution 0.463 1.126 0.773 1.442 sum 16.897 -11.877 -1.115 20.684 Atomic orbital electron populations 1.69963 1.07669 1.27407 1.52067 1.25579 0.95268 1.01704 0.95002 0.85859 0.79359 0.79913 0.78453 1.20300 1.22202 1.17564 1.20645 0.91249 0.91744 1.48065 1.19737 0.94516 0.95941 0.95099 1.21900 0.98230 0.95351 0.99547 1.20814 0.93467 0.88400 0.90239 0.90338 1.45019 1.21149 1.45543 1.21360 1.18388 0.85668 0.85989 0.88433 1.20772 0.99731 1.14167 1.01782 1.17239 0.88657 0.87284 0.85215 1.42552 1.26886 1.51915 1.16755 1.20142 1.02418 1.15202 1.02440 1.17793 0.83894 0.77075 0.73538 1.93142 1.95257 1.76617 1.50721 1.93194 1.60355 1.67913 1.95031 1.93194 1.96406 1.73127 1.53724 1.22371 0.86093 0.90598 0.93539 1.67435 1.17086 1.14705 1.32256 1.21717 0.93469 0.98760 1.00273 1.19293 0.97120 0.93329 0.93029 0.92891 0.95171 0.95345 0.93657 0.92610 0.75834 0.83942 0.75086 0.76346 0.79787 0.92658 0.93431 0.95357 0.97533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.03 12.73 21.45 0.27 -52.76 16 2 C 0.02 1.20 5.46 84.66 0.46 1.66 16 3 Si 0.94 41.67 27.27 68.60 1.87 43.54 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.25 -10.42 6.46 99.48 0.64 -9.78 16 7 C -0.50 -24.47 5.51 -16.17 -0.09 -24.56 16 8 C -0.01 -0.61 5.59 30.11 0.17 -0.44 16 9 C -0.11 -3.95 5.40 30.66 0.17 -3.79 16 10 C 0.18 5.76 2.04 44.96 0.09 5.85 16 11 H 0.08 2.55 6.45 -2.39 -0.02 2.53 16 12 N -0.70 -20.62 5.24 -324.84 -1.70 -22.32 16 13 C 0.45 12.91 7.62 132.94 1.01 13.92 16 14 C -0.33 -8.70 8.67 22.62 0.20 -8.50 16 15 C 0.33 7.57 6.71 38.54 0.26 7.83 16 16 N -0.84 -13.99 8.87 -51.05 -0.45 -14.44 16 17 C -0.39 -8.69 5.40 -19.63 -0.11 -8.79 16 18 C 0.53 10.52 2.81 71.24 0.20 10.72 16 19 F -0.18 -3.36 15.99 44.97 0.72 -2.64 16 20 F -0.18 -3.64 16.35 44.97 0.74 -2.90 16 21 F -0.18 -3.59 16.35 44.97 0.74 -2.86 16 22 C 0.24 5.45 10.58 84.53 0.89 6.34 16 23 N -0.59 -16.45 10.39 -193.56 -2.01 -18.46 16 24 C -0.10 -3.90 5.40 30.67 0.17 -3.74 16 25 C 0.01 0.48 5.97 30.12 0.18 0.66 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.03 1.25 4.78 -2.39 -0.01 1.24 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.79 7.66 -2.39 -0.02 1.77 16 31 H 0.41 11.36 8.72 -92.71 -0.81 10.55 16 32 H 0.14 3.66 6.09 -2.91 -0.02 3.64 16 33 H 0.42 5.49 8.86 -92.71 -0.82 4.67 16 34 H 0.41 5.94 6.47 -92.71 -0.60 5.34 16 35 H 0.19 3.24 7.15 -2.91 -0.02 3.22 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.03 1.49 7.07 -2.38 -0.02 1.47 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -57.40 323.29 2.63 -54.77 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -1.14 Total: 20.90 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 3.60 Total: -2.84 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -3.89 Total: -107.98 kcal Atomic # 9 Polarization: -10.59 SS G_CDS: 2.19 Total: -8.40 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.87 Total: 43.54 kcal Total: -57.40 2.63 -54.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.555 kcal (2) G-P(sol) polarization free energy of solvation -57.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds