Wall clock time and date at job start Tue Mar 31 2020 10:56:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86801 * 119.99956 * 2 1
4 4 H 1.48503 * 109.47130 * 270.00165 * 3 2 1
5 5 H 1.48500 * 109.47388 * 30.00012 * 3 2 1
6 6 H 1.48500 * 109.47438 * 149.99886 * 3 2 1
7 7 C 1.37879 * 120.00315 * 179.97438 * 2 1 3
8 8 C 1.51272 * 120.84971 * 180.02562 * 7 2 1
9 9 C 1.53235 * 108.53109 * 231.32370 * 8 7 2
10 10 C 1.52951 * 109.41904 * 305.37781 * 9 8 7
11 11 H 1.09000 * 109.40572 * 303.48672 * 10 9 8
12 12 N 1.46494 * 109.42604 * 183.69258 * 10 9 8
13 13 C 1.39037 * 119.99944 * 84.63891 * 12 10 9
14 14 C 1.38822 * 119.66538 * 0.02562 * 13 12 10
15 15 C 1.39130 * 119.00633 * 180.02562 * 14 13 12
16 16 N 1.39198 * 120.82451 * 179.97438 * 15 14 13
17 17 C 1.39694 * 118.34898 * 359.97438 * 15 14 13
18 18 C 1.50698 * 120.37816 * 179.97438 * 17 15 14
19 19 F 1.39901 * 109.46899 * 179.97438 * 18 17 15
20 20 F 1.39899 * 109.46991 * 299.99647 * 18 17 15
21 21 F 1.39903 * 109.47535 * 59.99823 * 18 17 15
22 22 C 1.37726 * 119.23472 * 0.02562 * 17 15 14
23 23 N 1.32086 * 120.93629 * 359.72555 * 22 17 15
24 24 C 1.52965 * 109.81766 * 63.57924 * 10 9 8
25 25 C 1.51265 * 120.84903 * 359.97438 * 7 2 1
26 26 H 0.96999 * 119.99963 * 0.02562 * 1 2 3
27 27 H 1.08995 * 109.62837 * 351.03658 * 8 7 2
28 28 H 1.09002 * 109.62253 * 111.42142 * 8 7 2
29 29 H 1.08995 * 109.48217 * 65.35783 * 9 8 7
30 30 H 1.09003 * 109.47623 * 185.39047 * 9 8 7
31 31 H 0.97000 * 120.00067 * 264.63788 * 12 10 9
32 32 H 1.08003 * 120.49981 * 0.02562 * 14 13 12
33 33 H 0.97000 * 119.99706 * 359.97438 * 16 15 14
34 34 H 0.96993 * 119.99571 * 179.97438 * 16 15 14
35 35 H 1.08001 * 119.53062 * 180.02562 * 22 17 15
36 36 H 1.09002 * 109.48383 * 176.43545 * 24 10 9
37 37 H 1.08999 * 109.47882 * 56.40908 * 24 10 9
38 38 H 1.09007 * 109.62320 * 8.95948 * 25 7 2
39 39 H 1.09002 * 109.78860 * 248.48402 * 25 7 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4403 0.7000
7 6 2.0046 -1.1940 0.0005
8 6 3.5172 -1.2164 0.0011
9 6 3.9911 -2.1317 -1.1327
10 6 3.3404 -3.5076 -0.9813
11 1 3.5742 -3.9123 0.0034
12 7 3.8605 -4.4086 -2.0127
13 6 5.0546 -5.0894 -1.8033
14 6 5.7480 -4.9104 -0.6140
15 6 6.9417 -5.5980 -0.4191
16 7 7.6681 -5.4464 0.7586
17 6 7.3932 -6.4443 -1.4347
18 6 8.6806 -7.2107 -1.2721
19 9 8.9122 -7.9813 -2.4165
20 9 9.7382 -6.3128 -1.0920
21 9 8.5861 -8.0498 -0.1566
22 6 6.6488 -6.5694 -2.5867
23 7 5.5167 -5.9062 -2.7389
24 6 1.8234 -3.3833 -1.1327
25 6 1.2678 -2.5151 0.0017
26 1 -0.4850 0.8400 -0.0004
27 1 3.8983 -0.2079 -0.1589
28 1 3.8773 -1.5965 0.9571
29 1 3.7072 -1.6990 -2.0920
30 1 5.0753 -2.2352 -1.0871
31 1 3.3718 -4.5303 -2.8417
32 1 5.3667 -4.2474 0.1485
33 1 7.3436 -4.8552 1.4558
34 1 8.4987 -5.9319 0.8820
35 1 6.9931 -7.2227 -3.3747
36 1 1.3711 -4.3740 -1.0871
37 1 1.5905 -2.9211 -2.0920
38 1 0.2037 -2.3410 -0.1579
39 1 1.4170 -3.0200 0.9562
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001167841318.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:56:06
Heat of formation + Delta-G solvation = -147.329478 kcal
Electronic energy + Delta-G solvation = -26455.727115 eV
Core-core repulsion = 22174.333104 eV
Total energy + Delta-G solvation = -4281.394011 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.125 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-51.11148 -48.62398 -48.55912 -41.41363 -39.18564 -36.81732 -35.68726 -33.69096
-31.88949 -31.46173 -30.69046 -28.92248 -26.38465 -24.50433 -23.96709 -23.15266
-22.65401 -21.17343 -19.71266 -19.42754 -19.29772 -18.83232 -18.10943 -17.92588
-16.83205 -16.42830 -16.27172 -15.65812 -15.60576 -15.44167 -15.34307 -15.01921
-15.00699 -14.90379 -14.76431 -14.72589 -14.45180 -14.23348 -14.16803 -13.93157
-13.48799 -12.98759 -12.74703 -12.70627 -12.64832 -12.47441 -11.86885 -11.83280
-11.54130 -11.15083 -10.83926 -10.56064 -10.53440 -10.49937 -9.23039 -8.82609
-8.16334 -6.10135 0.15813 0.55424 1.38968 1.43224 1.50453 1.75499
2.14149 2.41484 2.60873 2.75966 2.95102 3.08740 3.13712 3.53879
3.63052 3.96050 4.07050 4.17867 4.24447 4.44638 4.56093 4.68338
4.72574 4.87474 4.93974 4.97830 5.07678 5.08262 5.25424 5.26931
5.39802 5.59881 5.65200 5.76879 5.84344 6.00490 6.20873 6.34614
6.62834 6.65941 6.97192 7.19944 7.48274 8.94445
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.026702 B = 0.003077 C = 0.002933
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1048.363099 B = 9098.199116 C = 9543.273794
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.023 3.977
3 Si 0.937 3.063
4 H -0.277 1.277
5 H -0.295 1.295
6 H -0.252 1.252
7 C -0.498 4.498
8 C -0.015 4.015
9 C -0.111 4.111
10 C 0.175 3.825
11 H 0.079 0.921
12 N -0.704 5.704
13 C 0.450 3.550
14 C -0.333 4.333
15 C 0.334 3.666
16 N -0.843 5.843
17 C -0.389 4.389
18 C 0.532 3.468
19 F -0.176 7.176
20 F -0.183 7.183
21 F -0.183 7.183
22 C 0.236 3.764
23 N -0.594 5.594
24 C -0.104 4.104
25 C 0.010 3.990
26 H 0.262 0.738
27 H 0.030 0.970
28 H 0.028 0.972
29 H 0.045 0.955
30 H 0.055 0.945
31 H 0.406 0.594
32 H 0.143 0.857
33 H 0.418 0.582
34 H 0.406 0.594
35 H 0.185 0.815
36 H 0.055 0.945
37 H 0.047 0.953
38 H 0.028 0.972
39 H 0.006 0.994
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.174 -13.181 -1.323 21.690
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.571 5.571
2 C -0.176 4.176
3 Si 0.764 3.236
4 H -0.203 1.203
5 H -0.222 1.222
6 H -0.176 1.176
7 C -0.517 4.517
8 C -0.053 4.053
9 C -0.150 4.150
10 C 0.071 3.929
11 H 0.097 0.903
12 N -0.331 5.331
13 C 0.215 3.785
14 C -0.365 4.365
15 C 0.216 3.784
16 N -0.381 5.381
17 C -0.402 4.402
18 C 0.477 3.523
19 F -0.157 7.157
20 F -0.165 7.165
21 F -0.165 7.165
22 C 0.074 3.926
23 N -0.315 5.315
24 C -0.142 4.142
25 C -0.028 4.028
26 H 0.071 0.929
27 H 0.048 0.952
28 H 0.047 0.953
29 H 0.063 0.937
30 H 0.074 0.926
31 H 0.242 0.758
32 H 0.161 0.839
33 H 0.249 0.751
34 H 0.237 0.763
35 H 0.202 0.798
36 H 0.073 0.927
37 H 0.066 0.934
38 H 0.046 0.954
39 H 0.025 0.975
Dipole moment (debyes) X Y Z Total
from point charges 16.434 -13.002 -1.888 21.041
hybrid contribution 0.463 1.126 0.773 1.442
sum 16.897 -11.877 -1.115 20.684
Atomic orbital electron populations
1.69963 1.07669 1.27407 1.52067 1.25579 0.95268 1.01704 0.95002
0.85859 0.79359 0.79913 0.78453 1.20300 1.22202 1.17564 1.20645
0.91249 0.91744 1.48065 1.19737 0.94516 0.95941 0.95099 1.21900
0.98230 0.95351 0.99547 1.20814 0.93467 0.88400 0.90239 0.90338
1.45019 1.21149 1.45543 1.21360 1.18388 0.85668 0.85989 0.88433
1.20772 0.99731 1.14167 1.01782 1.17239 0.88657 0.87284 0.85215
1.42552 1.26886 1.51915 1.16755 1.20142 1.02418 1.15202 1.02440
1.17793 0.83894 0.77075 0.73538 1.93142 1.95257 1.76617 1.50721
1.93194 1.60355 1.67913 1.95031 1.93194 1.96406 1.73127 1.53724
1.22371 0.86093 0.90598 0.93539 1.67435 1.17086 1.14705 1.32256
1.21717 0.93469 0.98760 1.00273 1.19293 0.97120 0.93329 0.93029
0.92891 0.95171 0.95345 0.93657 0.92610 0.75834 0.83942 0.75086
0.76346 0.79787 0.92658 0.93431 0.95357 0.97533
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.03 12.73 21.45 0.27 -52.76 16
2 C 0.02 1.20 5.46 84.66 0.46 1.66 16
3 Si 0.94 41.67 27.27 68.60 1.87 43.54 16
4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16
5 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16
6 H -0.25 -10.42 6.46 99.48 0.64 -9.78 16
7 C -0.50 -24.47 5.51 -16.17 -0.09 -24.56 16
8 C -0.01 -0.61 5.59 30.11 0.17 -0.44 16
9 C -0.11 -3.95 5.40 30.66 0.17 -3.79 16
10 C 0.18 5.76 2.04 44.96 0.09 5.85 16
11 H 0.08 2.55 6.45 -2.39 -0.02 2.53 16
12 N -0.70 -20.62 5.24 -324.84 -1.70 -22.32 16
13 C 0.45 12.91 7.62 132.94 1.01 13.92 16
14 C -0.33 -8.70 8.67 22.62 0.20 -8.50 16
15 C 0.33 7.57 6.71 38.54 0.26 7.83 16
16 N -0.84 -13.99 8.87 -51.05 -0.45 -14.44 16
17 C -0.39 -8.69 5.40 -19.63 -0.11 -8.79 16
18 C 0.53 10.52 2.81 71.24 0.20 10.72 16
19 F -0.18 -3.36 15.99 44.97 0.72 -2.64 16
20 F -0.18 -3.64 16.35 44.97 0.74 -2.90 16
21 F -0.18 -3.59 16.35 44.97 0.74 -2.86 16
22 C 0.24 5.45 10.58 84.53 0.89 6.34 16
23 N -0.59 -16.45 10.39 -193.56 -2.01 -18.46 16
24 C -0.10 -3.90 5.40 30.67 0.17 -3.74 16
25 C 0.01 0.48 5.97 30.12 0.18 0.66 16
26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16
27 H 0.03 1.25 4.78 -2.39 -0.01 1.24 16
28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16
29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16
30 H 0.06 1.79 7.66 -2.39 -0.02 1.77 16
31 H 0.41 11.36 8.72 -92.71 -0.81 10.55 16
32 H 0.14 3.66 6.09 -2.91 -0.02 3.64 16
33 H 0.42 5.49 8.86 -92.71 -0.82 4.67 16
34 H 0.41 5.94 6.47 -92.71 -0.60 5.34 16
35 H 0.19 3.24 7.15 -2.91 -0.02 3.22 16
36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
38 H 0.03 1.49 7.07 -2.38 -0.02 1.47 16
39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16
Total: -1.00 -57.40 323.29 2.63 -54.77
By element:
Atomic # 1 Polarization: 22.04 SS G_CDS: -1.14 Total: 20.90 kcal
Atomic # 6 Polarization: -6.44 SS G_CDS: 3.60 Total: -2.84 kcal
Atomic # 7 Polarization: -104.09 SS G_CDS: -3.89 Total: -107.98 kcal
Atomic # 9 Polarization: -10.59 SS G_CDS: 2.19 Total: -8.40 kcal
Atomic # 14 Polarization: 41.67 SS G_CDS: 1.87 Total: 43.54 kcal
Total: -57.40 2.63 -54.77 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001167841318.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -92.555 kcal
(2) G-P(sol) polarization free energy of solvation -57.400 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.955 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.774 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.329 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds