Wall clock time and date at job start Tue Mar 31 2020 11:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39286 * 119.51105 * 2 1 4 4 C 1.36301 * 121.04184 * 179.72398 * 3 2 1 5 5 C 1.40093 * 119.53510 * 0.28395 * 4 3 2 6 6 C 1.41762 * 119.41990 * 359.97438 * 5 4 3 7 7 C 1.40846 * 118.27269 * 180.02562 * 6 5 4 8 8 C 1.36068 * 118.85952 * 0.02562 * 7 6 5 9 9 N 1.32646 * 121.99401 * 359.97438 * 8 7 6 10 10 C 1.31951 * 122.64082 * 0.02562 * 9 8 7 11 11 N 1.38421 * 120.14831 * 180.02562 * 10 9 8 12 12 C 1.46498 * 119.99973 * 359.97438 * 11 10 9 13 13 C 1.53005 * 109.47534 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47181 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46895 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99924 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99984 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99928 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99820 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47424 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47010 * 119.99833 * 19 17 15 22 22 H 1.48503 * 109.46842 * 239.99210 * 19 17 15 23 23 C 1.36283 * 119.51813 * 180.29454 * 2 1 3 24 24 N 1.48037 * 120.25485 * 359.96769 * 23 2 1 25 25 O 1.21801 * 119.99666 * 270.29927 * 24 23 2 26 26 O 1.21795 * 120.00133 * 90.30744 * 24 23 2 27 27 H 1.08993 * 109.47550 * 89.99265 * 1 2 3 28 28 H 1.08996 * 109.47319 * 209.99576 * 1 2 3 29 29 H 1.09005 * 109.46932 * 329.99075 * 1 2 3 30 30 H 1.08002 * 119.48251 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.23495 * 180.30396 * 4 3 2 32 32 H 1.08001 * 120.57325 * 180.02562 * 7 6 5 33 33 H 1.08007 * 119.00018 * 179.97438 * 8 7 6 34 34 H 0.96998 * 120.00630 * 179.97438 * 11 10 9 35 35 H 1.09001 * 109.47457 * 300.00229 * 12 11 10 36 36 H 1.09005 * 109.46822 * 60.00166 * 12 11 10 37 37 H 1.09001 * 109.47022 * 300.00601 * 13 12 11 38 38 H 1.09005 * 109.46844 * 60.00286 * 13 12 11 39 39 H 1.09001 * 109.47782 * 300.00318 * 14 13 12 40 40 H 1.09005 * 109.46849 * 60.00471 * 14 13 12 41 41 H 0.96996 * 119.99709 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1930 1.2122 0.0000 4 6 3.5555 1.2486 0.0056 5 6 4.2785 0.0486 0.0055 6 6 3.5801 -1.1851 0.0000 7 6 4.3309 -2.3767 0.0005 8 6 5.6893 -2.2971 0.0067 9 7 6.3250 -1.1330 0.0118 10 6 5.6910 0.0242 0.0117 11 7 6.4067 1.2091 0.0166 12 6 7.8713 1.1801 0.0225 13 6 8.4099 2.6122 0.0265 14 6 9.9395 2.5819 0.0333 15 6 10.4699 3.9925 0.0379 16 1 9.7844 4.8271 0.0365 17 6 11.8302 4.2176 0.0438 18 7 12.6648 3.2012 0.0460 19 14 12.4875 5.9660 0.0501 20 1 11.3512 6.9221 0.0470 21 1 13.3121 6.1804 1.2665 22 1 13.3219 6.1855 -1.1585 23 6 2.1784 -1.1859 -0.0061 24 7 1.4331 -2.4650 -0.0120 25 8 1.1223 -2.9935 1.0405 26 8 1.1309 -2.9889 -1.0691 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5140 30 1 1.6367 2.1378 0.0004 31 1 4.0742 2.1958 0.0105 32 1 3.8371 -3.3372 -0.0040 33 1 6.2673 -3.2095 0.0076 34 1 5.9385 2.0586 0.0161 35 1 8.2209 0.6577 0.9130 36 1 8.2280 0.6607 -0.8670 37 1 8.0603 3.1343 -0.8642 38 1 8.0532 3.1320 0.9158 39 1 10.2887 2.0600 0.9242 40 1 10.2965 2.0620 -0.8557 41 1 13.6218 3.3596 0.0505 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:33 Heat of formation + Delta-G solvation = 40.275406 kcal Electronic energy + Delta-G solvation = -24818.900083 eV Core-core repulsion = 21087.497971 eV Total energy + Delta-G solvation = -3731.402112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.59256 -41.17425 -38.42849 -36.70118 -36.66410 -34.20333 -33.36878 -32.75308 -31.47323 -29.52295 -28.62329 -26.78535 -26.19024 -24.21684 -23.55053 -22.59105 -21.82543 -20.63363 -19.47514 -19.00374 -18.65170 -17.85836 -17.15896 -16.53839 -16.32504 -15.76217 -15.44393 -15.06679 -14.70296 -14.59233 -14.52147 -14.21215 -14.01646 -13.53977 -12.98502 -12.68103 -12.57972 -12.38795 -12.18644 -11.99118 -11.89957 -11.86046 -11.34625 -11.26405 -11.11011 -10.87616 -10.86922 -10.63095 -10.02339 -9.74807 -9.65855 -9.54321 -9.49325 -9.21269 -8.45809 -7.76593 -6.10210 -4.13677 -0.23126 0.29508 0.33407 1.12158 1.40518 2.40288 2.91279 3.23999 3.31958 3.34820 3.64192 3.75312 3.95131 4.15207 4.24325 4.27326 4.36909 4.48784 4.66587 4.77389 4.86139 4.95354 5.11022 5.25664 5.25925 5.31480 5.43654 5.49804 5.57697 5.62033 5.71264 5.81077 6.00218 6.03998 6.19250 6.44023 6.51516 6.79337 6.94490 7.12567 7.35145 7.53333 7.64525 7.87745 7.99341 8.28233 8.92930 9.51106 11.01037 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028937 B = 0.002299 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.380747 B =12176.492494 C =12994.577746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.013 3.987 3 C -0.148 4.148 4 C -0.022 4.022 5 C -0.156 4.156 6 C 0.062 3.938 7 C -0.266 4.266 8 C 0.186 3.814 9 N -0.556 5.556 10 C 0.460 3.540 11 N -0.694 5.694 12 C 0.122 3.878 13 C -0.123 4.123 14 C 0.025 3.975 15 C -0.524 4.524 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.052 4.052 24 N 0.027 4.973 25 O -0.143 6.143 26 O -0.139 6.139 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.129 0.871 33 H 0.161 0.839 34 H 0.408 0.592 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.721 -6.516 -0.167 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 C -0.167 4.167 4 C -0.041 4.041 5 C -0.163 4.163 6 C 0.056 3.944 7 C -0.290 4.290 8 C 0.038 3.962 9 N -0.277 5.277 10 C 0.210 3.790 11 N -0.322 5.322 12 C 0.000 4.000 13 C -0.161 4.161 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.531 5.531 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.133 4.133 24 N 0.557 4.443 25 O -0.365 6.365 26 O -0.363 6.363 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.178 0.822 34 H 0.245 0.755 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.984 -5.942 -0.149 22.773 hybrid contribution -0.764 0.816 0.006 1.118 sum -22.748 -5.126 -0.143 23.319 Atomic orbital electron populations 1.21148 0.89386 1.04724 1.04268 1.19477 0.97264 0.90662 0.91516 1.20584 0.94095 0.96654 1.05380 1.21159 0.94341 0.97352 0.91293 1.18211 0.93204 0.93094 1.11764 1.17157 0.89223 0.94127 0.93915 1.21344 0.95937 0.96866 1.14819 1.21979 0.91225 0.94887 0.88087 1.67261 1.39894 0.96717 1.23839 1.18500 0.85785 0.87983 0.86739 1.45093 1.08207 1.03976 1.74883 1.21795 0.75621 0.99954 1.02609 1.21936 1.00997 0.92299 1.00912 1.19016 0.86969 0.97499 0.97750 1.21214 0.91605 0.92278 1.51114 0.92623 1.25031 0.97173 0.97055 0.95185 1.69968 1.02630 1.30124 1.50425 0.86525 0.78975 0.84739 0.77680 1.19778 1.20940 1.20945 1.20128 0.91159 0.83279 1.18702 1.43430 0.98775 1.01844 1.00284 1.94566 1.56247 1.64585 1.21089 1.94563 1.56416 1.64859 1.20427 0.88938 0.91043 0.89022 0.83431 0.83886 0.85315 0.82163 0.75462 0.91177 0.91182 0.92681 0.92688 0.96190 0.96190 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.72 36.00 0.35 -0.57 16 2 C 0.01 0.12 5.85 -104.94 -0.61 -0.50 16 3 C -0.15 -1.08 9.59 -39.89 -0.38 -1.46 16 4 C -0.02 -0.18 9.52 -39.58 -0.38 -0.56 16 5 C -0.16 -1.81 5.75 -106.70 -0.61 -2.42 16 6 C 0.06 0.78 5.74 -106.84 -0.61 0.16 16 7 C -0.27 -3.27 9.64 -39.38 -0.38 -3.65 16 8 C 0.19 2.28 11.06 -17.98 -0.20 2.08 16 9 N -0.56 -7.95 9.53 -12.45 -0.12 -8.07 16 10 C 0.46 6.04 7.53 -155.15 -1.17 4.87 16 11 N -0.69 -8.65 5.63 -60.08 -0.34 -8.99 16 12 C 0.12 1.90 5.70 -4.04 -0.02 1.88 16 13 C -0.12 -2.21 5.27 -26.73 -0.14 -2.35 16 14 C 0.03 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 16 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 19 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.05 -0.61 6.09 -79.91 -0.49 -1.10 16 24 N 0.03 0.34 2.48 33.98 0.08 0.42 16 25 O -0.14 -1.90 19.06 -29.46 -0.56 -2.47 16 26 O -0.14 -1.85 19.25 -29.46 -0.57 -2.42 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.56 7.21 -51.93 -0.37 0.19 16 29 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.14 0.81 6.51 -52.49 -0.34 0.47 16 32 H 0.13 1.51 7.63 -52.49 -0.40 1.11 16 33 H 0.16 1.50 8.06 -52.48 -0.42 1.07 16 34 H 0.41 3.97 6.63 -40.82 -0.27 3.70 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -31.73 356.32 -10.77 -42.50 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.15 Total: -0.83 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -5.20 Total: -16.07 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.36 Total: -41.98 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -1.13 Total: -4.88 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.73 -10.77 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.772 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds