Wall clock time and date at job start Tue Mar 31 2020 10:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48498 * 109.47283 * 239.99835 * 3 2 1 5 5 H 1.48496 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46983 * 120.00209 * 3 2 1 7 7 C 1.38813 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.46840 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 11 15 15 O 1.21553 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.47870 * 120.00001 * 180.02562 * 14 13 12 17 17 C 1.39686 * 120.07294 * 0.02562 * 16 14 13 18 18 C 1.38049 * 120.14572 * 179.97438 * 17 16 14 19 19 C 1.38107 * 120.30063 * 0.02562 * 18 17 16 20 20 C 1.39638 * 120.14413 * 0.02562 * 19 18 17 21 21 C 1.47853 * 120.07366 * 179.97438 * 20 19 18 22 22 C 1.35764 * 126.58110 * 0.02562 * 21 20 19 23 23 N 1.34136 * 107.51693 * 179.97438 * 22 21 20 24 24 C 1.30353 * 108.90357 * 0.02562 * 23 22 21 25 25 O 1.34006 * 109.03345 * 359.74689 * 24 23 22 26 26 C 1.39306 * 120.07661 * 179.72238 * 16 14 13 27 27 H 0.97005 * 119.99630 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.46596 * 59.99748 * 10 9 7 30 30 H 1.09002 * 109.47129 * 300.00103 * 10 9 7 31 31 H 1.09001 * 109.46652 * 60.00269 * 11 10 9 32 32 H 1.08992 * 109.47514 * 300.00358 * 11 10 9 33 33 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 34 34 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 35 35 H 0.97000 * 120.00420 * 0.02562 * 13 12 11 36 36 H 1.07997 * 119.92542 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.85167 * 180.02562 * 18 17 16 38 38 H 1.07995 * 119.92549 * 179.97438 * 19 18 17 39 39 H 1.07998 * 126.23904 * 359.95919 * 22 21 20 40 40 H 1.08009 * 125.48694 * 180.02562 * 24 23 22 41 41 H 1.08011 * 120.14407 * 0.02730 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8286 -6.1448 0.0005 13 7 0.8766 -7.2582 0.0005 14 6 1.3258 -8.5289 0.0005 15 8 2.5209 -8.7511 0.0010 16 6 0.3649 -9.6528 0.0000 17 6 -1.0088 -9.3993 -0.0011 18 6 -1.9072 -10.4474 -0.0022 19 6 -1.4554 -11.7525 -0.0017 20 6 -0.0849 -12.0201 0.0005 21 6 0.3971 -13.4178 0.0016 22 6 -0.3698 -14.5381 0.0003 23 7 0.4577 -15.5938 0.0015 24 6 1.6888 -15.1655 0.0040 25 8 1.6852 -13.8254 -0.0011 26 6 0.8274 -10.9669 -0.0059 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.6846 -3.7145 0.8905 30 1 2.6846 -3.7146 -0.8894 31 1 0.4367 -4.7621 -0.8886 32 1 0.4373 -4.7618 0.8913 33 1 2.4547 -6.2024 -0.8899 34 1 2.4558 -6.2026 0.8901 35 1 -0.0771 -7.0810 0.0005 36 1 -1.3687 -8.3811 -0.0011 37 1 -2.9683 -10.2459 -0.0034 38 1 -2.1636 -12.5678 -0.0021 39 1 -1.4492 -14.5729 -0.0012 40 1 2.5700 -15.7900 0.0051 41 1 1.8886 -11.1683 -0.0096 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169957403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:28 Heat of formation + Delta-G solvation = 21.842576 kcal Electronic energy + Delta-G solvation = -23700.079552 eV Core-core repulsion = 19967.878132 eV Total energy + Delta-G solvation = -3732.201420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.74091 -40.46715 -38.71208 -36.10695 -35.24351 -34.49122 -33.25607 -32.03238 -31.55799 -29.71930 -28.94278 -25.71568 -24.44898 -23.95298 -22.95448 -22.19613 -21.87931 -21.25066 -20.32388 -18.78978 -17.63853 -17.03433 -17.01140 -16.64028 -16.27313 -15.74777 -15.70837 -15.22066 -14.58158 -14.51188 -14.50799 -14.29880 -13.91109 -13.64617 -13.29363 -13.25509 -13.02220 -12.44993 -12.30334 -11.87146 -11.85874 -11.66663 -11.09358 -10.99611 -10.94099 -10.82455 -10.65002 -10.45253 -10.20448 -10.03833 -9.72325 -9.54493 -9.13761 -8.89521 -8.63220 -6.95862 -5.79181 -3.08197 0.04382 0.53484 1.39220 2.18022 2.21391 2.65166 2.95346 3.43515 3.45871 3.47631 3.48835 3.73707 4.06441 4.28219 4.36391 4.48560 4.56483 4.60075 4.62397 4.84070 4.98374 5.11397 5.21547 5.25887 5.34822 5.43877 5.55341 5.57471 5.77965 5.78986 5.80426 5.84445 5.93949 6.01307 6.14922 6.22454 6.28344 6.35967 6.75311 6.79600 7.18659 7.33189 7.67945 8.02067 8.39762 9.50906 10.07627 10.42325 11.43691 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.041662 B = 0.001727 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.909666 B =16212.845194 C =16859.004604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.122 3.878 13 N -0.720 5.720 14 C 0.554 3.446 15 O -0.535 6.535 16 C -0.126 4.126 17 C -0.075 4.075 18 C -0.119 4.119 19 C -0.073 4.073 20 C -0.027 4.027 21 C 0.001 3.999 22 C -0.023 4.023 23 N -0.487 5.487 24 C 0.176 3.824 25 O -0.196 6.196 26 C -0.040 4.040 27 H 0.256 0.744 28 H 0.383 0.617 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.400 0.600 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.187 0.813 40 H 0.253 0.747 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.612 -30.513 -0.004 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.002 4.002 13 N -0.372 5.372 14 C 0.341 3.659 15 O -0.413 6.413 16 C -0.129 4.129 17 C -0.094 4.094 18 C -0.137 4.137 19 C -0.091 4.091 20 C -0.028 4.028 21 C -0.052 4.052 22 C -0.163 4.163 23 N -0.215 5.215 24 C -0.049 4.049 25 O -0.082 6.082 26 C -0.059 4.059 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.236 0.764 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.204 0.796 40 H 0.269 0.731 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.714 -31.118 -0.008 31.339 hybrid contribution -0.101 1.631 -0.002 1.634 sum -3.815 -29.487 -0.010 29.733 Atomic orbital electron populations 1.69651 1.05135 1.25808 1.57721 1.24751 0.95562 0.97759 1.02919 0.86234 0.78506 0.83354 0.77900 1.21221 1.21656 1.21224 1.19207 0.91098 0.84130 1.42859 0.91127 1.42319 1.05841 0.99955 1.89654 1.20520 0.93250 0.85157 0.98275 1.21954 0.99634 0.93261 1.02782 1.21423 0.91656 0.84328 1.02756 1.45993 1.10919 1.05586 1.74659 1.18179 0.88056 0.82837 0.76842 1.90795 1.16115 1.84755 1.49645 1.19940 0.93658 0.93746 1.05585 1.21540 0.91921 1.00161 0.95761 1.21037 1.00436 0.91607 1.00588 1.21231 0.93259 0.97711 0.96891 1.17509 0.93322 0.86975 1.04981 1.21387 0.81091 0.95004 1.07722 1.23310 1.01066 0.86385 1.05503 1.70368 1.00878 1.32529 1.17741 1.28210 0.98311 0.78391 0.99991 1.84521 1.28853 1.25460 1.69342 1.21379 1.00615 0.90369 0.93568 0.93457 0.78305 0.96009 0.96004 0.91223 0.91213 0.91065 0.91058 0.76428 0.84780 0.84228 0.84731 0.79576 0.73145 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.45 5.60 -59.91 -0.34 -18.79 16 10 C 0.16 3.06 6.26 -4.04 -0.03 3.04 16 11 C -0.14 -2.03 5.44 -26.73 -0.15 -2.18 16 12 C 0.12 1.61 5.67 -4.04 -0.02 1.58 16 13 N -0.72 -8.09 5.51 -61.24 -0.34 -8.42 16 14 C 0.55 7.07 7.77 -12.32 -0.10 6.98 16 15 O -0.54 -8.83 16.34 5.32 0.09 -8.75 16 16 C -0.13 -1.27 5.87 -105.02 -0.62 -1.89 16 17 C -0.08 -0.54 9.54 -39.11 -0.37 -0.91 16 18 C -0.12 -0.67 10.02 -39.70 -0.40 -1.07 16 19 C -0.07 -0.44 9.57 -39.11 -0.37 -0.81 16 20 C -0.03 -0.23 5.87 -105.03 -0.62 -0.85 16 21 C 0.00 0.01 7.07 -36.53 -0.26 -0.25 16 22 C -0.02 -0.18 11.29 -17.43 -0.20 -0.38 16 23 N -0.49 -4.31 11.27 -14.68 -0.17 -4.48 16 24 C 0.18 1.19 13.22 52.13 0.69 1.88 16 25 O -0.20 -1.76 10.59 4.23 0.04 -1.71 16 26 C -0.04 -0.41 9.27 -38.77 -0.36 -0.77 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.38 10.00 7.67 -40.82 -0.31 9.68 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 3.38 6.50 -40.82 -0.27 3.11 16 36 H 0.13 0.68 6.39 -52.49 -0.34 0.34 16 37 H 0.14 0.42 8.06 -52.49 -0.42 -0.01 16 38 H 0.13 0.45 7.02 -52.49 -0.37 0.08 16 39 H 0.19 0.91 7.29 -52.49 -0.38 0.53 16 40 H 0.25 0.44 8.06 -52.48 -0.42 0.02 16 41 H 0.14 1.61 7.53 -52.48 -0.40 1.21 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -36.09 359.09 -7.62 -43.71 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -4.99 Total: 6.09 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -3.04 Total: -3.07 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.11 Total: -59.03 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.13 Total: -10.46 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.09 -7.62 -43.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169957403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.553 kcal (2) G-P(sol) polarization free energy of solvation -36.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds