Wall clock time and date at job start Tue Mar 31 2020 10:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48498 * 109.47283 * 239.99835 * 3 2 1 5 5 H 1.48496 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46983 * 120.00209 * 3 2 1 7 7 C 1.38813 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.46840 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 11 15 15 O 1.21553 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.47870 * 120.00001 * 180.02562 * 14 13 12 17 17 C 1.39686 * 120.07294 * 0.02562 * 16 14 13 18 18 C 1.38049 * 120.14572 * 179.97438 * 17 16 14 19 19 C 1.38107 * 120.30063 * 0.02562 * 18 17 16 20 20 C 1.39638 * 120.14413 * 0.02562 * 19 18 17 21 21 C 1.47853 * 120.07366 * 179.97438 * 20 19 18 22 22 C 1.35764 * 126.58110 * 0.02562 * 21 20 19 23 23 N 1.34136 * 107.51693 * 179.97438 * 22 21 20 24 24 C 1.30353 * 108.90357 * 0.02562 * 23 22 21 25 25 O 1.34006 * 109.03345 * 359.74689 * 24 23 22 26 26 C 1.39306 * 120.07661 * 179.72238 * 16 14 13 27 27 H 0.97005 * 119.99630 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.46596 * 59.99748 * 10 9 7 30 30 H 1.09002 * 109.47129 * 300.00103 * 10 9 7 31 31 H 1.09001 * 109.46652 * 60.00269 * 11 10 9 32 32 H 1.08992 * 109.47514 * 300.00358 * 11 10 9 33 33 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 34 34 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 35 35 H 0.97000 * 120.00420 * 0.02562 * 13 12 11 36 36 H 1.07997 * 119.92542 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.85167 * 180.02562 * 18 17 16 38 38 H 1.07995 * 119.92549 * 179.97438 * 19 18 17 39 39 H 1.07998 * 126.23904 * 359.95919 * 22 21 20 40 40 H 1.08009 * 125.48694 * 180.02562 * 24 23 22 41 41 H 1.08011 * 120.14407 * 0.02730 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8286 -6.1448 0.0005 13 7 0.8766 -7.2582 0.0005 14 6 1.3258 -8.5289 0.0005 15 8 2.5209 -8.7511 0.0010 16 6 0.3649 -9.6528 0.0000 17 6 -1.0088 -9.3993 -0.0011 18 6 -1.9072 -10.4474 -0.0022 19 6 -1.4554 -11.7525 -0.0017 20 6 -0.0849 -12.0201 0.0005 21 6 0.3971 -13.4178 0.0016 22 6 -0.3698 -14.5381 0.0003 23 7 0.4577 -15.5938 0.0015 24 6 1.6888 -15.1655 0.0040 25 8 1.6852 -13.8254 -0.0011 26 6 0.8274 -10.9669 -0.0059 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.6846 -3.7145 0.8905 30 1 2.6846 -3.7146 -0.8894 31 1 0.4367 -4.7621 -0.8886 32 1 0.4373 -4.7618 0.8913 33 1 2.4547 -6.2024 -0.8899 34 1 2.4558 -6.2026 0.8901 35 1 -0.0771 -7.0810 0.0005 36 1 -1.3687 -8.3811 -0.0011 37 1 -2.9683 -10.2459 -0.0034 38 1 -2.1636 -12.5678 -0.0021 39 1 -1.4492 -14.5729 -0.0012 40 1 2.5700 -15.7900 0.0051 41 1 1.8886 -11.1683 -0.0096 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169957403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:27 Heat of formation + Delta-G solvation = -5.465068 kcal Electronic energy + Delta-G solvation = -23701.263700 eV Core-core repulsion = 19967.878132 eV Total energy + Delta-G solvation = -3733.385568 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.31166 -41.31151 -39.47652 -37.53147 -36.00927 -35.83696 -34.15624 -33.44741 -32.31602 -31.20419 -29.64616 -27.17161 -25.38763 -24.76135 -24.10341 -23.17679 -22.65825 -22.39131 -21.24364 -19.57474 -19.05978 -18.19751 -17.63813 -17.47790 -17.03857 -16.88076 -16.63491 -16.31027 -15.86736 -15.70109 -15.28150 -15.16531 -15.01696 -14.81254 -14.57781 -14.15353 -14.09976 -13.65954 -13.31928 -12.82434 -12.79107 -12.63189 -12.48193 -12.43820 -12.41703 -12.10171 -12.06621 -11.80138 -11.69813 -11.13983 -11.03650 -10.93663 -10.31200 -10.02127 -9.19248 -9.01660 -7.96467 -5.25490 -0.51344 -0.13138 0.84226 1.48159 1.50941 1.57138 1.62389 1.68848 1.85906 2.00641 2.56444 2.78834 3.32443 3.37303 3.46471 3.61059 3.73399 3.83289 3.96642 4.07097 4.07144 4.10968 4.25615 4.29455 4.40063 4.53010 4.70669 4.71215 4.73746 4.82946 4.86744 4.87326 5.20386 5.23629 5.28370 5.28960 5.30793 5.32382 5.34708 5.48803 5.72561 6.26151 6.43312 6.63274 7.08285 7.32929 8.07464 8.31677 9.26610 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.041662 B = 0.001727 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.909666 B =16212.845194 C =16859.004604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.253 4.253 8 H 0.074 0.926 9 N -0.746 5.746 10 C 0.151 3.849 11 C -0.118 4.118 12 C 0.132 3.868 13 N -0.708 5.708 14 C 0.552 3.448 15 O -0.584 6.584 16 C -0.146 4.146 17 C -0.072 4.072 18 C -0.109 4.109 19 C -0.062 4.062 20 C -0.035 4.035 21 C -0.024 4.024 22 C -0.019 4.019 23 N -0.519 5.519 24 C 0.185 3.815 25 O -0.217 6.217 26 C -0.062 4.062 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.416 0.584 36 H 0.157 0.843 37 H 0.178 0.822 38 H 0.168 0.832 39 H 0.214 0.786 40 H 0.292 0.708 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.303 -31.502 -0.003 32.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.092 0.908 9 N -0.389 5.389 10 C 0.024 3.976 11 C -0.156 4.156 12 C 0.008 3.992 13 N -0.360 5.360 14 C 0.341 3.659 15 O -0.465 6.465 16 C -0.149 4.149 17 C -0.090 4.090 18 C -0.127 4.127 19 C -0.080 4.080 20 C -0.036 4.036 21 C -0.077 4.077 22 C -0.158 4.158 23 N -0.247 5.247 24 C -0.040 4.040 25 O -0.104 6.104 26 C -0.081 4.081 27 H 0.061 0.939 28 H 0.209 0.791 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.254 0.746 36 H 0.174 0.826 37 H 0.195 0.805 38 H 0.186 0.814 39 H 0.231 0.769 40 H 0.307 0.693 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.418 -32.129 -0.007 32.582 hybrid contribution 0.438 1.796 -0.002 1.849 sum -4.980 -30.333 -0.009 30.739 Atomic orbital electron populations 1.69795 1.06490 1.26254 1.59167 1.25566 0.96476 1.01077 1.03423 0.85202 0.77242 0.79088 0.78165 1.20449 1.21889 1.20459 1.19615 0.91566 0.85489 1.41796 0.90809 1.42507 1.05731 1.01062 1.89581 1.20679 0.94122 0.84806 0.97978 1.21701 0.98496 0.91861 1.03537 1.21153 0.91682 0.84267 1.02133 1.45799 1.11478 1.04699 1.74018 1.18654 0.87944 0.83647 0.75679 1.90762 1.18290 1.85449 1.52015 1.19754 0.94502 0.92385 1.08222 1.21825 0.90538 1.02006 0.94630 1.21491 1.01935 0.90726 0.98512 1.21677 0.92484 0.99171 0.94642 1.17669 0.94261 0.86379 1.05286 1.21618 0.81202 0.95510 1.09374 1.23761 1.02241 0.85681 1.04101 1.70404 1.01828 1.33171 1.19304 1.29201 0.99209 0.77926 0.97616 1.84529 1.29510 1.26587 1.69758 1.21252 0.99890 0.91402 0.95592 0.93883 0.79148 0.96058 0.96050 0.90444 0.90436 0.91807 0.91804 0.74556 0.82551 0.80498 0.81433 0.76892 0.69305 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.30 13.06 21.65 0.28 -58.02 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 3 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.75 -37.46 5.60 -343.45 -1.92 -39.38 16 10 C 0.15 5.87 6.26 86.38 0.54 6.41 16 11 C -0.12 -3.35 5.44 30.59 0.17 -3.18 16 12 C 0.13 3.44 5.67 86.38 0.49 3.93 16 13 N -0.71 -15.41 5.51 -465.94 -2.57 -17.97 16 14 C 0.55 14.42 7.77 86.79 0.67 15.10 16 15 O -0.58 -20.43 16.34 -3.88 -0.06 -20.50 16 16 C -0.15 -2.92 5.87 -20.12 -0.12 -3.04 16 17 C -0.07 -0.85 9.54 22.57 0.22 -0.64 16 18 C -0.11 -0.82 10.02 22.19 0.22 -0.60 16 19 C -0.06 -0.57 9.57 22.58 0.22 -0.35 16 20 C -0.04 -0.58 5.87 -20.13 -0.12 -0.70 16 21 C -0.02 -0.42 7.07 24.24 0.17 -0.25 16 22 C -0.02 -0.27 11.29 83.77 0.95 0.67 16 23 N -0.52 -8.63 11.27 -315.08 -3.55 -12.18 16 24 C 0.18 2.37 13.22 130.46 1.72 4.09 16 25 O -0.22 -4.00 10.59 -7.78 -0.08 -4.08 16 26 C -0.06 -1.34 9.27 22.79 0.21 -1.12 16 27 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 28 H 0.38 19.66 7.67 -92.71 -0.71 18.95 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.42 6.23 6.50 -92.71 -0.60 5.63 16 36 H 0.16 1.06 6.39 -2.91 -0.02 1.04 16 37 H 0.18 0.07 8.06 -2.91 -0.02 0.04 16 38 H 0.17 0.37 7.02 -2.91 -0.02 0.35 16 39 H 0.21 1.49 7.29 -2.91 -0.02 1.47 16 40 H 0.29 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.12 2.99 7.53 -2.90 -0.02 2.97 16 Total: -1.00 -80.19 359.09 0.54 -79.65 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -0.23 Total: 21.31 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 6.65 Total: 3.29 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -7.76 Total: -127.56 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.15 Total: -24.58 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -80.19 0.54 -79.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169957403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.184 kcal (2) G-P(sol) polarization free energy of solvation -80.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds