Wall clock time and date at job start Tue Mar 31 2020 11:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35990 * 117.00005 * 2 1 4 4 C 1.38738 * 119.98020 * 359.97438 * 3 2 1 5 5 C 1.38072 * 120.02369 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.00855 * 180.02562 * 5 4 3 7 7 C 1.38905 * 119.97856 * 0.30311 * 5 4 3 8 8 N 1.39944 * 120.02024 * 179.70843 * 7 5 4 9 9 C 1.39780 * 120.00228 * 77.15021 * 8 7 5 10 10 C 1.39440 * 119.91938 * 4.16345 * 9 8 7 11 11 C 1.38355 * 120.46327 * 179.97438 * 10 9 8 12 12 C 1.38017 * 120.29374 * 0.02562 * 11 10 9 13 13 F 1.35097 * 120.08596 * 179.97438 * 12 11 10 14 14 C 1.41025 * 119.82296 * 359.97438 * 12 11 10 15 15 C 1.41288 * 120.22262 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00174 * 24.61699 * 15 14 12 17 17 C 1.39915 * 119.99578 * 204.61711 * 15 14 12 18 18 N 1.30852 * 120.00412 * 19.18403 * 17 15 14 19 19 Si 1.86807 * 119.99641 * 199.18398 * 17 15 14 20 20 H 1.48495 * 109.47107 * 94.96248 * 19 17 15 21 21 H 1.48499 * 109.46578 * 214.95898 * 19 17 15 22 22 H 1.48498 * 109.47194 * 334.95950 * 19 17 15 23 23 C 1.38194 * 119.91742 * 183.89760 * 9 8 7 24 24 C 1.38867 * 119.95568 * 359.44407 * 7 5 4 25 25 C 1.38111 * 119.98115 * 0.53098 * 24 7 5 26 26 C 1.50699 * 119.98958 * 179.76670 * 25 24 7 27 27 H 1.08996 * 109.47144 * 60.00996 * 1 2 3 28 28 H 1.09007 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47499 * 300.00056 * 1 2 3 30 30 H 1.08004 * 119.98451 * 359.97438 * 4 3 2 31 31 H 1.09001 * 109.47100 * 90.00362 * 6 5 4 32 32 H 1.08994 * 109.47546 * 330.00428 * 6 5 4 33 33 H 1.08998 * 109.47169 * 210.00116 * 6 5 4 34 34 H 0.96999 * 119.99506 * 257.14813 * 8 7 5 35 35 H 1.08000 * 119.76837 * 0.02562 * 10 9 8 36 36 H 1.08005 * 119.84920 * 180.02562 * 11 10 9 37 37 H 0.97001 * 120.00612 * 180.02562 * 18 17 15 38 38 H 1.08007 * 120.14330 * 0.02562 * 23 9 8 39 39 H 1.08007 * 120.00658 * 180.26021 * 24 7 5 40 40 H 1.09001 * 109.47093 * 269.97966 * 26 25 24 41 41 H 1.08993 * 109.47345 * 29.97724 * 26 25 24 42 42 H 1.09000 * 109.46905 * 149.98105 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2904 2.3750 -0.0005 5 6 1.9163 3.6057 0.0000 6 6 1.0947 4.8690 0.0000 7 6 3.3034 3.6789 -0.0053 8 7 3.9386 4.9258 -0.0109 9 6 4.0204 5.6739 1.1670 10 6 3.5462 5.1397 2.3645 11 6 3.6220 5.8701 3.5371 12 6 4.1682 7.1376 3.5338 13 9 4.2397 7.8473 4.6811 14 6 4.6515 7.6898 2.3295 15 6 5.2118 8.9868 2.3163 16 1 5.6370 9.4006 3.2188 17 6 5.2158 9.7350 1.1340 18 7 4.3981 9.4250 0.1607 19 14 6.3887 11.1766 0.9451 20 1 7.6192 10.7255 0.2469 21 1 5.7334 12.2471 0.1515 22 1 6.7459 11.7033 2.2869 23 6 4.5760 6.9391 1.1429 24 6 4.0593 2.5140 0.0006 25 6 3.4314 1.2839 0.0005 26 6 4.2516 0.0196 0.0016 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2118 2.3178 -0.0014 31 1 0.8963 5.1734 1.0277 32 1 0.1508 4.6886 -0.5141 33 1 1.6429 5.6589 -0.5134 34 1 4.3223 5.2709 -0.8323 35 1 3.1175 4.1485 2.3770 36 1 3.2521 5.4464 4.4592 37 1 4.4012 9.9434 -0.6591 38 1 4.9467 7.3510 0.2158 39 1 5.1379 2.5700 0.0007 40 1 4.4497 -0.2858 -1.0258 41 1 5.1957 0.1994 0.5156 42 1 3.7024 -0.7693 0.5156 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175116338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:56 Heat of formation + Delta-G solvation = -58.540777 kcal Electronic energy + Delta-G solvation = -25684.379146 eV Core-core repulsion = 21928.772081 eV Total energy + Delta-G solvation = -3755.607065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.05588 -41.43049 -39.86076 -38.48012 -36.17846 -35.14139 -34.35064 -31.61687 -30.89051 -30.08727 -28.74422 -27.91658 -27.18258 -25.48562 -23.51150 -22.99775 -22.43659 -21.32644 -19.24002 -18.38657 -18.10622 -17.78097 -17.49879 -17.22065 -16.71833 -16.55551 -15.95048 -15.84965 -15.25113 -15.00497 -14.93250 -14.42373 -14.36158 -14.08690 -14.06045 -13.78853 -13.63898 -13.45472 -13.32289 -13.13712 -12.92941 -12.76660 -12.72736 -12.64407 -12.46925 -12.24298 -12.02650 -11.81604 -11.63899 -11.31295 -11.14653 -10.57063 -9.65251 -9.47450 -8.91981 -8.72692 -8.00417 -6.40481 0.33928 0.38040 0.93051 1.03995 1.38189 1.51299 1.51906 2.20668 2.39827 2.59879 2.70287 2.79361 3.60515 3.80044 3.87257 4.15941 4.17044 4.25475 4.32267 4.41056 4.43707 4.55720 4.61859 4.73039 4.76342 4.76932 4.78086 4.86315 4.88350 5.00413 5.05530 5.14170 5.22703 5.30867 5.33945 5.41336 5.45421 5.68966 5.72814 5.79637 5.87124 6.05441 6.11319 6.41070 6.48716 6.77997 6.82742 7.00848 7.10952 8.27703 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.003324 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.969300 B = 8421.998787 C = 8742.182052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.119 3.881 4 C -0.197 4.197 5 C -0.060 4.060 6 C -0.105 4.105 7 C 0.111 3.889 8 N -0.699 5.699 9 C 0.230 3.770 10 C -0.260 4.260 11 C -0.087 4.087 12 C -0.101 4.101 13 F -0.177 7.177 14 C 0.093 3.907 15 C -0.496 4.496 16 H 0.067 0.933 17 C 0.045 3.955 18 N -0.807 5.807 19 Si 0.980 3.020 20 H -0.258 1.258 21 H -0.263 1.263 22 H -0.265 1.265 23 C -0.230 4.230 24 C -0.091 4.091 25 C -0.124 4.124 26 C -0.098 4.098 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.059 0.941 30 H 0.150 0.850 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.403 0.597 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.291 0.709 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 -15.645 -6.278 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.073 3.927 4 C -0.216 4.216 5 C -0.062 4.062 6 C -0.162 4.162 7 C 0.018 3.982 8 N -0.328 5.328 9 C 0.130 3.870 10 C -0.283 4.283 11 C -0.106 4.106 12 C -0.122 4.122 13 F -0.156 7.156 14 C 0.090 3.910 15 C -0.525 4.525 16 H 0.085 0.915 17 C -0.172 4.172 18 N -0.432 5.432 19 Si 0.801 3.199 20 H -0.182 1.182 21 H -0.187 1.187 22 H -0.189 1.189 23 C -0.254 4.254 24 C -0.110 4.110 25 C -0.126 4.126 26 C -0.154 4.154 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.078 0.922 30 H 0.167 0.833 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.240 0.760 35 H 0.129 0.871 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.151 0.849 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.980 -15.876 -6.416 18.138 hybrid contribution 0.325 1.430 0.043 1.467 sum -5.655 -14.446 -6.374 16.771 Atomic orbital electron populations 1.23330 0.76780 1.05528 1.02048 1.86048 1.23057 1.26074 1.88678 1.18864 0.91843 0.84563 0.97391 1.21137 1.00854 0.90634 1.08988 1.20142 0.93336 0.95432 0.97323 1.20646 0.99182 0.94308 1.02061 1.17407 0.90469 0.85260 1.05086 1.41685 1.64447 1.17713 1.08944 1.17585 0.93611 0.89792 0.85975 1.19874 1.16274 1.01112 0.91006 1.20522 0.99133 0.92305 0.98647 1.18062 1.16895 0.94404 0.82838 1.91200 1.96005 1.79500 1.48908 1.17637 0.89604 0.93496 0.90303 1.19644 1.35726 0.99872 0.97225 0.91476 1.26639 0.95357 1.01218 0.94013 1.69870 1.29086 1.38308 1.05915 0.85223 0.78603 0.76802 0.79295 1.18213 1.18741 1.18947 1.20403 1.13059 0.93247 0.98675 1.21268 1.00299 0.90554 0.98919 1.19331 0.91118 0.96162 1.05970 1.20588 0.98730 0.93281 1.02839 0.91860 0.86048 0.92231 0.83291 0.92170 0.89787 0.92769 0.75982 0.87053 0.86027 0.89802 0.86859 0.84875 0.90541 0.91059 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -6.88 9.53 -93.43 -0.89 -7.77 16 3 C 0.12 2.95 6.66 22.50 0.15 3.10 16 4 C -0.20 -4.90 8.69 22.35 0.19 -4.70 16 5 C -0.06 -1.79 5.44 -19.75 -0.11 -1.90 16 6 C -0.11 -3.16 9.40 71.23 0.67 -2.49 16 7 C 0.11 3.54 4.51 38.16 0.17 3.71 16 8 N -0.70 -25.35 4.46 -180.50 -0.81 -26.15 16 9 C 0.23 10.16 6.18 38.15 0.24 10.40 16 10 C -0.26 -11.39 9.22 22.59 0.21 -11.18 16 11 C -0.09 -4.04 10.00 22.25 0.22 -3.82 16 12 C -0.10 -5.42 7.31 22.90 0.17 -5.25 16 13 F -0.18 -9.57 16.71 44.97 0.75 -8.81 16 14 C 0.09 5.20 5.57 -21.26 -0.12 5.09 16 15 C -0.50 -27.81 8.77 23.43 0.21 -27.60 16 16 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 17 C 0.04 2.26 5.10 85.24 0.44 2.69 16 18 N -0.81 -41.00 11.06 21.82 0.24 -40.76 16 19 Si 0.98 38.44 29.60 68.60 2.03 40.47 16 20 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 23 C -0.23 -11.71 8.53 22.84 0.19 -11.52 16 24 C -0.09 -2.59 9.62 22.39 0.22 -2.37 16 25 C -0.12 -3.18 5.89 -19.79 -0.12 -3.29 16 26 C -0.10 -1.95 9.79 71.24 0.70 -1.25 16 27 H 0.06 0.72 7.66 -2.39 -0.02 0.71 16 28 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 30 H 0.15 2.89 6.29 -2.91 -0.02 2.87 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.08 1.98 8.08 -2.39 -0.02 1.96 16 33 H 0.05 1.85 7.44 -2.39 -0.02 1.83 16 34 H 0.40 13.77 8.83 -92.71 -0.82 12.95 16 35 H 0.11 4.52 6.73 -2.91 -0.02 4.50 16 36 H 0.12 4.99 8.06 -2.91 -0.02 4.96 16 37 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 38 H 0.11 5.90 6.24 -2.91 -0.02 5.88 16 39 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 42 H 0.07 1.37 7.52 -2.39 -0.02 1.35 16 Total: -1.00 -62.76 354.28 6.10 -56.66 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: 0.24 Total: 35.42 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 4.54 Total: -49.06 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -0.56 Total: -66.91 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.89 Total: -7.77 kcal Atomic # 9 Polarization: -9.57 SS G_CDS: 0.75 Total: -8.81 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -62.76 6.10 -56.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175116338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.880 kcal (2) G-P(sol) polarization free energy of solvation -62.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds