Wall clock time and date at job start Tue Mar 31 2020 11:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38224 * 120.01527 * 2 1 4 4 C 1.38224 * 120.02814 * 180.27716 * 3 2 1 5 5 C 1.38261 * 120.04777 * 359.44069 * 4 3 2 6 6 C 1.38183 * 120.02846 * 0.28300 * 5 4 3 7 7 C 1.50700 * 120.01182 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47109 * 259.99849 * 7 6 5 9 9 C 1.46903 * 110.99813 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47035 * 179.97438 * 9 8 7 11 11 C 1.38304 * 119.93113 * 269.73091 * 10 9 8 12 12 C 1.38100 * 120.06811 * 179.72559 * 11 10 9 13 13 C 1.38877 * 119.92855 * 0.56328 * 12 11 10 14 14 O 1.35750 * 120.06881 * 179.68331 * 13 12 11 15 15 C 1.34837 * 117.00277 * 174.48529 * 14 13 12 16 16 H 1.07999 * 119.99822 * 5.06314 * 15 14 13 17 17 C 1.38650 * 119.99962 * 185.05564 * 15 14 13 18 18 N 1.31557 * 119.99655 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00314 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47001 * 89.99936 * 19 17 15 21 21 H 1.48498 * 109.46950 * 209.99856 * 19 17 15 22 22 H 1.48499 * 109.47085 * 329.99902 * 19 17 15 23 23 C 1.38880 * 119.86383 * 359.70474 * 13 12 11 24 24 C 1.38090 * 119.93110 * 0.02562 * 23 13 12 25 25 C 1.38436 * 120.01446 * 179.71813 * 2 1 3 26 26 F 1.35105 * 120.02405 * 359.97438 * 25 2 1 27 27 H 1.09004 * 109.47308 * 270.28030 * 1 2 3 28 28 H 1.09007 * 109.47037 * 30.27762 * 1 2 3 29 29 H 1.08998 * 109.46970 * 150.28064 * 1 2 3 30 30 H 1.08002 * 119.98415 * 0.02562 * 3 2 1 31 31 H 1.07998 * 119.97463 * 179.72752 * 4 3 2 32 32 H 1.08002 * 119.98782 * 180.30199 * 5 4 3 33 33 H 1.09000 * 109.47514 * 20.00073 * 7 6 5 34 34 H 1.08999 * 109.46979 * 139.99851 * 7 6 5 35 35 H 1.00893 * 111.00057 * 56.05065 * 8 7 6 36 36 H 1.08997 * 109.47001 * 299.99670 * 9 8 7 37 37 H 1.09001 * 109.47303 * 60.00359 * 9 8 7 38 38 H 1.08000 * 119.96281 * 359.96942 * 11 10 9 39 39 H 1.07996 * 120.03483 * 180.26942 * 12 11 10 40 40 H 0.97001 * 119.99960 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.03498 * 179.97438 * 23 13 12 42 42 H 1.07999 * 119.96780 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5807 1.1972 -0.0058 5 6 4.2733 0.0006 0.0001 6 6 3.5842 -1.1972 0.0059 7 6 4.3395 -2.5012 0.0117 8 7 4.3764 -3.0518 -1.3497 9 6 5.1060 -4.3265 -1.3824 10 6 5.1223 -4.8599 -2.7918 11 6 4.1111 -5.6988 -3.2239 12 6 4.1202 -6.1847 -4.5165 13 6 5.1523 -5.8395 -5.3793 14 8 5.1675 -6.3207 -6.6485 15 6 6.1331 -5.8571 -7.4675 16 1 6.8979 -5.1989 -7.0823 17 6 6.1443 -6.2254 -8.8042 18 7 7.0868 -5.7734 -9.6031 19 14 4.8213 -7.3633 -9.4706 20 1 3.6745 -6.5563 -9.9593 21 1 5.3760 -8.1645 -10.5911 22 1 4.3617 -8.2737 -8.3912 23 6 6.1692 -5.0014 -4.9407 24 6 6.1515 -4.5143 -3.6486 25 6 2.1995 -1.1987 0.0059 26 9 1.5247 -2.3692 0.0122 27 1 -0.3634 0.0050 1.0277 28 1 -0.3633 0.8875 -0.5182 29 1 -0.3633 -0.8925 -0.5095 30 1 1.6584 2.1322 0.0004 31 1 4.1200 2.1328 -0.0102 32 1 5.3533 0.0020 0.0005 33 1 5.3574 -2.3301 0.3621 34 1 3.8406 -3.2071 0.6757 35 1 4.7763 -2.3893 -1.9970 36 1 6.1292 -4.1683 -1.0416 37 1 4.6120 -5.0448 -0.7282 38 1 3.3116 -5.9709 -2.5508 39 1 3.3281 -6.8362 -4.8547 40 1 7.0945 -6.0308 -10.5383 41 1 6.9734 -4.7315 -5.6092 42 1 6.9417 -3.8622 -3.3071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200294205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:01 Heat of formation + Delta-G solvation = -44.597542 kcal Electronic energy + Delta-G solvation = -24425.706768 eV Core-core repulsion = 20670.704327 eV Total energy + Delta-G solvation = -3755.002441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.78220 -40.91827 -40.16428 -38.77899 -36.83568 -34.50701 -33.90121 -32.33038 -31.81156 -30.69198 -28.00591 -27.68239 -26.55335 -24.65069 -23.66509 -22.84141 -22.02371 -21.78783 -19.83092 -19.12527 -18.41869 -17.68232 -16.98452 -16.70094 -16.63274 -16.22848 -15.91416 -15.77856 -15.58800 -15.40511 -15.25273 -14.84154 -14.42094 -14.29754 -14.21966 -14.16888 -14.06228 -13.97075 -13.62252 -13.18628 -12.99869 -12.82457 -12.75117 -12.46926 -12.44530 -12.22347 -12.12860 -11.94906 -11.75625 -11.27924 -10.91104 -9.81353 -9.77400 -9.50401 -9.35472 -8.98594 -8.50947 -6.23359 0.21672 0.26943 0.57203 0.62994 1.30588 1.34730 1.51261 2.27481 2.58977 2.75472 3.02024 3.15321 3.38982 3.51551 3.70214 3.78602 4.01304 4.01939 4.07404 4.18325 4.32630 4.35676 4.40972 4.45002 4.58671 4.61589 4.71177 4.73649 4.77533 4.81176 4.90283 4.99765 5.13461 5.25248 5.25950 5.32281 5.36298 5.42403 5.50135 5.57448 5.75375 5.80442 5.90217 5.97983 6.06446 6.25169 6.40503 6.83619 7.58433 8.60724 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.002393 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.342230 B =11699.006194 C =11824.514663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.138 4.138 3 C -0.096 4.096 4 C -0.127 4.127 5 C -0.097 4.097 6 C -0.128 4.128 7 C 0.103 3.897 8 N -0.691 5.691 9 C 0.122 3.878 10 C -0.150 4.150 11 C -0.051 4.051 12 C -0.195 4.195 13 C 0.120 3.880 14 O -0.246 6.246 15 C -0.399 4.399 16 H 0.082 0.918 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.970 3.030 20 H -0.266 1.266 21 H -0.266 1.266 22 H -0.264 1.264 23 C -0.237 4.237 24 C -0.064 4.064 25 C 0.089 3.911 26 F -0.147 7.147 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.343 0.657 36 H 0.050 0.950 37 H 0.085 0.915 38 H 0.145 0.855 39 H 0.126 0.874 40 H 0.285 0.715 41 H 0.109 0.891 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.909 13.581 24.304 29.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.138 4.138 3 C -0.114 4.114 4 C -0.145 4.145 5 C -0.115 4.115 6 C -0.129 4.129 7 C -0.025 4.025 8 N -0.323 5.323 9 C -0.006 4.006 10 C -0.151 4.151 11 C -0.069 4.069 12 C -0.214 4.214 13 C 0.071 3.929 14 O -0.154 6.154 15 C -0.476 4.476 16 H 0.099 0.901 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.191 1.191 22 H -0.188 1.188 23 C -0.256 4.256 24 C -0.083 4.083 25 C 0.070 3.930 26 F -0.125 7.125 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.173 0.827 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.161 0.839 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.163 0.837 39 H 0.144 0.856 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.597 13.057 24.062 29.010 hybrid contribution 0.804 -0.377 -0.888 1.255 sum -8.793 12.680 23.174 27.841 Atomic orbital electron populations 1.20758 0.89326 1.03593 1.03336 1.20286 0.98047 0.92123 1.03385 1.21280 0.94656 0.97314 0.98147 1.21532 0.94330 0.99047 0.99597 1.21248 1.01122 0.90866 0.98272 1.20001 0.91846 0.96937 1.04131 1.20765 0.98649 0.92216 0.90843 1.60500 1.58742 1.05855 1.07171 1.20646 0.96873 0.91165 0.91932 1.19655 0.96379 1.02116 0.96969 1.20896 0.97596 0.94901 0.93533 1.20510 0.99026 1.07273 0.94562 1.19675 0.94998 0.93377 0.84815 1.83520 1.51036 1.61556 1.19259 1.20719 1.05572 1.30214 0.91062 0.90080 1.25270 0.99802 0.99058 0.94685 1.69726 1.34487 1.45606 1.06595 0.85228 0.78466 0.78918 0.78169 1.19129 1.19069 1.18807 1.21258 1.01074 1.04773 0.98494 1.20932 0.98140 0.97627 0.91565 1.17721 0.90112 0.81104 1.04086 1.91445 1.80409 1.46809 1.93865 0.89960 0.89302 0.92464 0.82717 0.82728 0.83422 0.92064 0.90494 0.83920 0.93151 0.89646 0.83699 0.85641 0.90557 0.87357 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.83 71.24 0.70 -0.93 16 2 C -0.14 -2.46 5.89 -19.82 -0.12 -2.58 16 3 C -0.10 -1.29 9.70 22.26 0.22 -1.07 16 4 C -0.13 -1.58 10.04 22.27 0.22 -1.36 16 5 C -0.10 -1.42 9.67 22.26 0.22 -1.20 16 6 C -0.13 -2.45 5.40 -19.82 -0.11 -2.56 16 7 C 0.10 1.90 5.54 85.56 0.47 2.38 16 8 N -0.69 -15.55 6.48 -521.98 -3.38 -18.93 16 9 C 0.12 2.73 5.81 85.56 0.50 3.22 16 10 C -0.15 -4.55 5.40 -19.83 -0.11 -4.65 16 11 C -0.05 -1.65 9.69 22.25 0.22 -1.44 16 12 C -0.19 -7.75 9.99 22.39 0.22 -7.53 16 13 C 0.12 5.77 6.65 22.58 0.15 5.92 16 14 O -0.25 -13.68 8.59 -22.82 -0.20 -13.88 16 15 C -0.40 -23.91 9.95 67.92 0.68 -23.24 16 16 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 17 C 0.01 0.60 5.49 84.83 0.47 1.06 16 18 N -0.92 -55.72 13.96 21.61 0.30 -55.41 16 19 Si 0.97 46.20 28.62 68.60 1.96 48.16 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 23 C -0.24 -10.50 9.17 22.39 0.21 -10.30 16 24 C -0.06 -2.19 9.69 22.25 0.22 -1.98 16 25 C 0.09 1.97 7.19 22.37 0.16 2.13 16 26 F -0.15 -3.80 15.88 44.97 0.71 -3.09 16 27 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.09 0.92 8.09 -2.38 -0.02 0.91 16 29 H 0.06 0.97 7.64 -2.39 -0.02 0.96 16 30 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 31 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.15 1.52 8.04 -2.91 -0.02 1.50 16 33 H 0.06 0.88 8.00 -2.39 -0.02 0.86 16 34 H 0.08 1.48 7.95 -2.39 -0.02 1.46 16 35 H 0.34 7.86 8.72 -89.70 -0.78 7.08 16 36 H 0.05 0.97 8.08 -2.39 -0.02 0.95 16 37 H 0.09 1.77 8.08 -2.39 -0.02 1.75 16 38 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 39 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 40 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.11 5.27 5.64 -2.91 -0.02 5.25 16 42 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -69.54 362.35 3.97 -65.57 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.26 Total: 21.70 kcal Atomic # 6 Polarization: -48.42 SS G_CDS: 4.31 Total: -44.12 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -3.08 Total: -74.34 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.20 Total: -13.88 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.71 Total: -3.09 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.96 Total: 48.16 kcal Total: -69.54 3.97 -65.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200294205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.972 kcal (2) G-P(sol) polarization free energy of solvation -69.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds