Wall clock time and date at job start Tue Mar 31 2020 11:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99901 * 2 1 4 4 C 1.50704 * 109.47145 * 180.02562 * 3 2 1 5 5 C 1.38329 * 119.87552 * 269.72620 * 4 3 2 6 6 C 1.38016 * 120.11714 * 179.76489 * 5 4 3 7 7 C 1.50701 * 120.06123 * 180.25819 * 6 5 4 8 8 C 1.39346 * 119.87818 * 0.51208 * 6 5 4 9 9 C 1.48373 * 120.12404 * 179.72372 * 8 6 5 10 10 C 1.39014 * 120.41989 * 270.02462 * 9 8 6 11 11 C 1.40954 * 118.13055 * 179.97438 * 10 9 8 12 12 C 1.41372 * 120.57278 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99926 * 203.55560 * 12 11 10 14 14 C 1.39892 * 120.00195 * 23.55940 * 12 11 10 15 15 N 1.30861 * 119.99932 * 17.59553 * 14 12 11 16 16 Si 1.86802 * 119.99993 * 197.59200 * 14 12 11 17 17 H 1.48504 * 109.46852 * 90.00355 * 16 14 12 18 18 H 1.48501 * 109.47159 * 209.99783 * 16 14 12 19 19 H 1.48496 * 109.47244 * 330.00085 * 16 14 12 20 20 C 1.40806 * 118.85110 * 359.97438 * 11 10 9 21 21 N 1.31501 * 120.69807 * 0.02562 * 20 11 10 22 22 C 1.32164 * 122.07708 * 359.72729 * 21 20 11 23 23 F 1.35103 * 119.45993 * 180.29014 * 22 21 20 24 24 C 1.39350 * 119.75533 * 359.74403 * 8 6 5 25 25 C 1.50698 * 120.05988 * 179.97438 * 24 8 6 26 26 C 1.38017 * 119.87622 * 359.97438 * 24 8 6 27 27 H 1.09008 * 109.46925 * 299.99420 * 1 2 3 28 28 H 1.08993 * 109.47678 * 59.99491 * 1 2 3 29 29 H 1.08996 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47195 * 300.00472 * 3 2 1 31 31 H 1.09003 * 109.46870 * 60.00514 * 3 2 1 32 32 H 1.07993 * 119.93891 * 359.97438 * 5 4 3 33 33 H 1.09002 * 109.46674 * 270.25186 * 7 6 5 34 34 H 1.08992 * 109.46947 * 30.24825 * 7 6 5 35 35 H 1.08996 * 109.46961 * 150.25749 * 7 6 5 36 36 H 1.08002 * 120.93381 * 359.97438 * 10 9 8 37 37 H 0.97002 * 119.99771 * 180.02562 * 15 14 12 38 38 H 1.08000 * 119.64623 * 179.97438 * 20 11 10 39 39 H 1.08998 * 109.46967 * 270.02288 * 25 24 8 40 40 H 1.08997 * 109.47486 * 30.01739 * 25 24 8 41 41 H 1.08998 * 109.47260 * 150.02341 * 25 24 8 42 42 H 1.08003 * 119.93327 * 179.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2004 1.1376 1.1985 6 6 5.5758 1.0238 1.2038 7 6 6.3234 0.9648 2.5110 8 6 6.2724 0.9689 -0.0018 9 6 7.7516 0.8528 -0.0025 10 6 8.5472 1.9928 -0.0025 11 6 9.9468 1.8264 -0.0026 12 6 10.8046 2.9502 -0.0032 13 1 11.8138 2.8591 -0.3771 14 6 10.3463 4.1801 0.4806 15 7 9.2797 4.2293 1.2372 16 14 11.2570 5.7524 0.0468 17 1 10.6975 6.3186 -1.2069 18 1 11.0987 6.7361 1.1480 19 1 12.6985 5.4525 -0.1456 20 6 10.4759 0.5215 -0.0022 21 7 9.6803 -0.5255 -0.0022 22 6 8.3640 -0.4068 0.0028 23 9 7.5966 -1.5187 0.0084 24 6 5.5747 1.0240 -1.2068 25 6 6.3212 0.9657 -2.5146 26 6 4.1988 1.1319 -1.2003 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6885 1.8464 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 3.6598 1.1852 2.1322 33 1 6.5845 1.9751 2.8261 34 1 5.6937 0.4992 3.2689 35 1 7.2328 0.3777 2.3832 36 1 8.1052 2.9782 -0.0024 37 1 8.9617 5.0822 1.5723 38 1 11.5465 0.3791 -0.0027 39 1 6.5819 1.9762 -2.8294 40 1 7.2308 0.3787 -2.3880 41 1 5.6909 0.5003 -3.2724 42 1 3.6572 1.1751 -2.1337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206339284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:53 Heat of formation + Delta-G solvation = -55.607988 kcal Electronic energy + Delta-G solvation = -26012.348849 eV Core-core repulsion = 22256.868959 eV Total energy + Delta-G solvation = -3755.479890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.50799 -39.61908 -38.24333 -37.48960 -34.20696 -33.28487 -33.12649 -30.58225 -29.80610 -27.65991 -26.54019 -26.33344 -25.53764 -25.16861 -22.17837 -21.55435 -20.35206 -19.86322 -17.53590 -16.60378 -16.45111 -16.14496 -15.93485 -15.85451 -15.29937 -15.11300 -14.80038 -14.38241 -13.54686 -13.48450 -13.43720 -12.82061 -12.69755 -12.61227 -12.45503 -12.37431 -12.22449 -12.12223 -11.91633 -11.77419 -11.68674 -11.41704 -11.31990 -11.25891 -11.03143 -10.79927 -10.67030 -10.65268 -10.07495 -9.77803 -9.50570 -8.53086 -8.35631 -8.14956 -7.98228 -7.64219 -7.03138 -4.63694 1.58943 1.79276 2.28697 2.66351 2.94090 2.97206 3.01346 3.68743 3.73010 4.27556 4.33722 4.91772 4.95619 5.12016 5.18172 5.19835 5.22442 5.29555 5.32478 5.38404 5.45815 5.49858 5.65882 5.81646 5.93365 5.99368 6.05727 6.10862 6.21324 6.23740 6.41569 6.49316 6.51668 6.73532 6.75973 6.80757 6.84184 6.91074 7.00538 7.06747 7.13680 7.37174 7.48117 7.63661 7.76814 8.21118 8.47310 8.47384 9.22804 9.87704 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.004050 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.144365 B = 6912.272232 C = 7721.058955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.108 3.892 4 C -0.098 4.098 5 C -0.108 4.108 6 C -0.063 4.063 7 C -0.110 4.110 8 C -0.010 4.010 9 C -0.092 4.092 10 C -0.098 4.098 11 C 0.057 3.943 12 C -0.440 4.440 13 H 0.088 0.912 14 C 0.074 3.926 15 N -0.781 5.781 16 Si 0.914 3.086 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.259 1.259 20 C 0.007 3.993 21 N -0.489 5.489 22 C 0.162 3.838 23 F -0.146 7.146 24 C -0.070 4.070 25 C -0.110 4.110 26 C -0.108 4.108 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.137 0.863 37 H 0.286 0.714 38 H 0.137 0.863 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.778 1.044 -1.588 11.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.032 3.968 4 C -0.098 4.098 5 C -0.126 4.126 6 C -0.063 4.063 7 C -0.167 4.167 8 C -0.011 4.011 9 C -0.095 4.095 10 C -0.123 4.123 11 C 0.052 3.948 12 C -0.469 4.469 13 H 0.106 0.894 14 C -0.146 4.146 15 N -0.405 5.405 16 Si 0.738 3.262 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.183 1.183 20 C -0.155 4.155 21 N -0.200 5.200 22 C 0.008 3.992 23 F -0.126 7.126 24 C -0.071 4.071 25 C -0.167 4.167 26 C -0.126 4.126 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.097 0.903 38 H 0.155 0.845 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.502 0.170 -1.438 11.592 hybrid contribution -0.402 1.618 -0.042 1.668 sum -11.904 1.787 -1.480 12.128 Atomic orbital electron populations 1.22733 0.81506 1.02636 0.99759 1.88022 1.19139 1.27802 1.95333 1.21313 0.90344 0.84726 1.00404 1.19378 0.93229 1.03652 0.93581 1.20695 0.93338 1.01502 0.97042 1.19931 0.93076 0.98310 0.95018 1.20741 0.99973 1.02799 0.93141 1.18587 0.92215 0.98312 0.91942 1.18986 0.91381 0.93026 1.06134 1.21644 0.92744 0.96542 1.01361 1.18470 0.92647 0.93421 0.90261 1.19565 0.99862 0.92556 1.34957 0.89436 1.25999 0.94879 1.01399 0.92339 1.69779 1.20463 1.28662 1.21635 0.86191 0.80832 0.79944 0.79224 1.19036 1.20082 1.18291 1.22277 0.97224 0.86964 1.08994 1.66279 1.03593 1.37065 1.13099 1.17525 0.85886 0.80473 1.15328 1.91414 1.73502 1.52383 1.95256 1.19907 0.93151 0.99104 0.94888 1.20740 1.00216 1.02342 0.93391 1.20668 0.93288 1.01662 0.97021 0.94218 0.94224 0.89730 0.92735 0.92702 0.86423 0.90661 0.92346 0.91162 0.84552 0.90254 0.84548 0.91206 0.91096 0.92116 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.20 10.69 -35.23 -0.38 -5.57 16 3 C 0.11 1.36 6.06 36.01 0.22 1.58 16 4 C -0.10 -1.54 5.51 -104.56 -0.58 -2.12 16 5 C -0.11 -1.78 9.34 -39.63 -0.37 -2.15 16 6 C -0.06 -1.20 5.91 -104.29 -0.62 -1.82 16 7 C -0.11 -2.00 9.62 36.01 0.35 -1.65 16 8 C -0.01 -0.20 4.95 -104.90 -0.52 -0.72 16 9 C -0.09 -2.09 2.44 -104.75 -0.26 -2.35 16 10 C -0.10 -2.34 8.55 -38.27 -0.33 -2.66 16 11 C 0.06 1.39 5.59 -106.71 -0.60 0.79 16 12 C -0.44 -10.44 9.08 -37.77 -0.34 -10.78 16 13 H 0.09 1.96 7.90 -52.48 -0.41 1.55 16 14 C 0.07 1.66 5.17 -17.35 -0.09 1.57 16 15 N -0.78 -18.17 10.92 55.54 0.61 -17.57 16 16 Si 0.91 16.92 29.59 -169.99 -5.03 11.89 16 17 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 18 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 19 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 20 C 0.01 0.16 10.96 -16.72 -0.18 -0.02 16 21 N -0.49 -12.13 10.33 -12.58 -0.13 -12.26 16 22 C 0.16 3.93 7.84 -16.73 -0.13 3.80 16 23 F -0.15 -3.52 16.83 2.25 0.04 -3.49 16 24 C -0.07 -1.30 5.91 -104.29 -0.62 -1.92 16 25 C -0.11 -1.87 9.62 36.00 0.35 -1.52 16 26 C -0.11 -1.76 9.34 -39.63 -0.37 -2.13 16 27 H 0.04 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.07 1.44 6.83 -51.93 -0.35 1.09 16 36 H 0.14 3.37 6.19 -52.49 -0.32 3.04 16 37 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 38 H 0.14 2.95 8.06 -52.49 -0.42 2.53 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.35 6.86 -51.93 -0.36 1.00 16 41 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 42 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -27.40 359.88 -8.09 -35.48 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.65 Total: 6.82 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.97 Total: -20.72 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.48 Total: -29.83 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.38 Total: -5.57 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.04 Total: -3.49 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.40 -8.09 -35.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206339284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.124 kcal (2) G-P(sol) polarization free energy of solvation -27.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds