Wall clock time and date at job start Tue Mar 31 2020 11:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99901 * 2 1 4 4 C 1.50704 * 109.47145 * 180.02562 * 3 2 1 5 5 C 1.38329 * 119.87552 * 269.72620 * 4 3 2 6 6 C 1.38016 * 120.11714 * 179.76489 * 5 4 3 7 7 C 1.50701 * 120.06123 * 180.25819 * 6 5 4 8 8 C 1.39346 * 119.87818 * 0.51208 * 6 5 4 9 9 C 1.48373 * 120.12404 * 179.72372 * 8 6 5 10 10 C 1.39014 * 120.41989 * 270.02462 * 9 8 6 11 11 C 1.40954 * 118.13055 * 179.97438 * 10 9 8 12 12 C 1.41372 * 120.57278 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99926 * 203.55560 * 12 11 10 14 14 C 1.39892 * 120.00195 * 23.55940 * 12 11 10 15 15 N 1.30861 * 119.99932 * 17.59553 * 14 12 11 16 16 Si 1.86802 * 119.99993 * 197.59200 * 14 12 11 17 17 H 1.48504 * 109.46852 * 90.00355 * 16 14 12 18 18 H 1.48501 * 109.47159 * 209.99783 * 16 14 12 19 19 H 1.48496 * 109.47244 * 330.00085 * 16 14 12 20 20 C 1.40806 * 118.85110 * 359.97438 * 11 10 9 21 21 N 1.31501 * 120.69807 * 0.02562 * 20 11 10 22 22 C 1.32164 * 122.07708 * 359.72729 * 21 20 11 23 23 F 1.35103 * 119.45993 * 180.29014 * 22 21 20 24 24 C 1.39350 * 119.75533 * 359.74403 * 8 6 5 25 25 C 1.50698 * 120.05988 * 179.97438 * 24 8 6 26 26 C 1.38017 * 119.87622 * 359.97438 * 24 8 6 27 27 H 1.09008 * 109.46925 * 299.99420 * 1 2 3 28 28 H 1.08993 * 109.47678 * 59.99491 * 1 2 3 29 29 H 1.08996 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47195 * 300.00472 * 3 2 1 31 31 H 1.09003 * 109.46870 * 60.00514 * 3 2 1 32 32 H 1.07993 * 119.93891 * 359.97438 * 5 4 3 33 33 H 1.09002 * 109.46674 * 270.25186 * 7 6 5 34 34 H 1.08992 * 109.46947 * 30.24825 * 7 6 5 35 35 H 1.08996 * 109.46961 * 150.25749 * 7 6 5 36 36 H 1.08002 * 120.93381 * 359.97438 * 10 9 8 37 37 H 0.97002 * 119.99771 * 180.02562 * 15 14 12 38 38 H 1.08000 * 119.64623 * 179.97438 * 20 11 10 39 39 H 1.08998 * 109.46967 * 270.02288 * 25 24 8 40 40 H 1.08997 * 109.47486 * 30.01739 * 25 24 8 41 41 H 1.08998 * 109.47260 * 150.02341 * 25 24 8 42 42 H 1.08003 * 119.93327 * 179.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2004 1.1376 1.1985 6 6 5.5758 1.0238 1.2038 7 6 6.3234 0.9648 2.5110 8 6 6.2724 0.9689 -0.0018 9 6 7.7516 0.8528 -0.0025 10 6 8.5472 1.9928 -0.0025 11 6 9.9468 1.8264 -0.0026 12 6 10.8046 2.9502 -0.0032 13 1 11.8138 2.8591 -0.3771 14 6 10.3463 4.1801 0.4806 15 7 9.2797 4.2293 1.2372 16 14 11.2570 5.7524 0.0468 17 1 10.6975 6.3186 -1.2069 18 1 11.0987 6.7361 1.1480 19 1 12.6985 5.4525 -0.1456 20 6 10.4759 0.5215 -0.0022 21 7 9.6803 -0.5255 -0.0022 22 6 8.3640 -0.4068 0.0028 23 9 7.5966 -1.5187 0.0084 24 6 5.5747 1.0240 -1.2068 25 6 6.3212 0.9657 -2.5146 26 6 4.1988 1.1319 -1.2003 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6885 1.8464 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 3.6598 1.1852 2.1322 33 1 6.5845 1.9751 2.8261 34 1 5.6937 0.4992 3.2689 35 1 7.2328 0.3777 2.3832 36 1 8.1052 2.9782 -0.0024 37 1 8.9617 5.0822 1.5723 38 1 11.5465 0.3791 -0.0027 39 1 6.5819 1.9762 -2.8294 40 1 7.2308 0.3787 -2.3880 41 1 5.6909 0.5003 -3.2724 42 1 3.6572 1.1751 -2.1337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206339284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:52 Heat of formation + Delta-G solvation = -68.699672 kcal Electronic energy + Delta-G solvation = -26012.916547 eV Core-core repulsion = 22256.868959 eV Total energy + Delta-G solvation = -3756.047588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.40501 -41.04009 -39.84388 -38.55808 -36.00664 -34.69326 -34.50410 -32.35526 -31.42215 -28.80016 -27.73276 -27.66645 -27.36206 -26.24783 -23.92764 -23.27066 -21.71266 -21.26697 -19.28318 -18.48860 -17.75201 -17.38520 -17.33171 -17.22012 -16.66374 -16.47868 -16.22159 -15.89119 -15.16562 -14.87204 -14.75852 -14.37954 -14.17014 -14.10114 -13.90410 -13.88727 -13.65730 -13.60870 -13.45117 -13.31877 -13.04244 -12.87551 -12.69252 -12.66108 -12.38264 -12.22456 -11.99590 -11.99496 -11.65611 -11.23390 -10.61336 -10.35035 -10.17327 -9.51966 -9.46284 -9.44825 -8.77713 -6.49471 0.24017 0.44114 0.48757 0.83334 1.41512 1.49869 1.55150 2.16787 2.52803 2.56543 3.19992 3.29840 3.47142 3.73681 3.81858 3.91043 3.93737 4.26351 4.30521 4.32083 4.44430 4.46765 4.59196 4.59324 4.64307 4.65401 4.65897 4.70833 4.72983 4.89327 4.91424 4.92250 4.96600 5.07443 5.15257 5.16389 5.33724 5.52154 5.56701 5.62128 5.73447 5.75539 5.92596 6.05983 6.25667 6.37884 6.62824 6.65215 7.34505 8.15640 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.004050 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.144365 B = 6912.272232 C = 7721.058955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.110 3.890 4 C -0.094 4.094 5 C -0.108 4.108 6 C -0.082 4.082 7 C -0.103 4.103 8 C -0.050 4.050 9 C -0.068 4.068 10 C -0.114 4.114 11 C 0.040 3.960 12 C -0.459 4.459 13 H 0.096 0.904 14 C 0.038 3.962 15 N -0.803 5.803 16 Si 0.988 3.012 17 H -0.262 1.262 18 H -0.268 1.268 19 H -0.253 1.253 20 C -0.009 4.009 21 N -0.502 5.502 22 C 0.132 3.868 23 F -0.150 7.150 24 C -0.085 4.085 25 C -0.106 4.106 26 C -0.107 4.107 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.036 0.964 36 H 0.126 0.874 37 H 0.296 0.704 38 H 0.154 0.846 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.089 0.911 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.817 2.709 -1.946 14.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.034 3.966 4 C -0.094 4.094 5 C -0.126 4.126 6 C -0.082 4.082 7 C -0.159 4.159 8 C -0.050 4.050 9 C -0.071 4.071 10 C -0.140 4.140 11 C 0.035 3.965 12 C -0.487 4.487 13 H 0.114 0.886 14 C -0.181 4.181 15 N -0.427 5.427 16 Si 0.808 3.192 17 H -0.186 1.186 18 H -0.193 1.193 19 H -0.177 1.177 20 C -0.170 4.170 21 N -0.214 5.214 22 C -0.020 4.020 23 F -0.130 7.130 24 C -0.085 4.085 25 C -0.163 4.163 26 C -0.125 4.125 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.161 0.839 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.144 0.856 37 H 0.107 0.893 38 H 0.171 0.829 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.108 0.892 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.560 1.811 -1.790 13.797 hybrid contribution 0.133 1.112 0.103 1.125 sum -13.427 2.923 -1.687 13.845 Atomic orbital electron populations 1.22946 0.79278 1.03742 1.01166 1.87962 1.21580 1.28216 1.95644 1.21357 0.87870 0.84943 1.02435 1.19833 0.95420 1.01254 0.92891 1.20982 0.92264 1.00572 0.98777 1.20092 0.94399 0.99270 0.94450 1.20658 0.99088 1.02054 0.94110 1.18709 0.91046 1.01523 0.93746 1.19044 0.92964 0.91846 1.03265 1.21548 0.92837 0.96384 1.03200 1.18780 0.93269 0.94063 0.90395 1.19905 1.00332 0.93237 1.35224 0.88569 1.26864 0.95525 1.04139 0.91526 1.69827 1.21294 1.30077 1.21510 0.85092 0.79610 0.75532 0.78997 1.18632 1.19287 1.17671 1.22535 0.97937 0.86792 1.09767 1.66225 1.04156 1.37695 1.13352 1.17748 0.85967 0.81028 1.17305 1.91376 1.73581 1.52602 1.95471 1.20131 0.94423 0.99438 0.94487 1.20716 0.99361 1.02333 0.93841 1.20997 0.92301 1.00453 0.98716 0.92841 0.92735 0.88912 0.90624 0.90816 0.83882 0.91244 0.89492 0.94494 0.85612 0.89319 0.82905 0.90756 0.94137 0.89219 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -9.91 10.69 -148.98 -1.59 -11.50 16 3 C 0.11 2.35 6.06 71.24 0.43 2.78 16 4 C -0.09 -2.71 5.51 -19.82 -0.11 -2.82 16 5 C -0.11 -3.40 9.34 22.24 0.21 -3.19 16 6 C -0.08 -3.14 5.91 -19.65 -0.12 -3.26 16 7 C -0.10 -3.82 9.62 71.24 0.69 -3.13 16 8 C -0.05 -2.09 4.95 -20.04 -0.10 -2.19 16 9 C -0.07 -3.24 2.44 -19.95 -0.05 -3.29 16 10 C -0.11 -5.73 8.55 23.12 0.20 -5.53 16 11 C 0.04 2.02 5.59 -21.21 -0.12 1.90 16 12 C -0.46 -22.07 9.08 23.44 0.21 -21.85 16 13 H 0.10 4.33 7.90 -2.91 -0.02 4.30 16 14 C 0.04 1.70 5.17 85.24 0.44 2.14 16 15 N -0.80 -37.66 10.92 21.82 0.24 -37.42 16 16 Si 0.99 33.82 29.59 68.60 2.03 35.86 16 17 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 18 H -0.27 -8.83 7.11 99.48 0.71 -8.12 16 19 H -0.25 -8.40 7.11 99.48 0.71 -7.70 16 20 C -0.01 -0.43 10.96 85.37 0.94 0.51 16 21 N -0.50 -26.13 10.33 -193.73 -2.00 -28.13 16 22 C 0.13 6.78 7.84 85.09 0.67 7.44 16 23 F -0.15 -7.62 16.83 44.97 0.76 -6.87 16 24 C -0.08 -3.12 5.91 -19.65 -0.12 -3.24 16 25 C -0.11 -3.61 9.62 71.24 0.69 -2.92 16 26 C -0.11 -3.26 9.34 22.24 0.21 -3.05 16 27 H 0.05 0.64 8.14 -2.38 -0.02 0.63 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 31 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 32 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.09 2.63 8.09 -2.39 -0.02 2.61 16 35 H 0.04 1.59 6.83 -2.39 -0.02 1.57 16 36 H 0.13 6.50 6.19 -2.91 -0.02 6.48 16 37 H 0.30 12.46 8.30 -92.71 -0.77 11.69 16 38 H 0.15 6.84 8.06 -2.91 -0.02 6.81 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.04 1.60 6.86 -2.39 -0.02 1.59 16 41 H 0.09 2.44 8.09 -2.39 -0.02 2.42 16 42 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -61.23 359.88 5.78 -55.46 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 1.03 Total: 30.71 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 5.31 Total: -38.10 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -1.76 Total: -65.55 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -1.59 Total: -11.50 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 0.76 Total: -6.87 kcal Atomic # 14 Polarization: 33.82 SS G_CDS: 2.03 Total: 35.86 kcal Total: -61.23 5.78 -55.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206339284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.243 kcal (2) G-P(sol) polarization free energy of solvation -61.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds