Wall clock time and date at job start Tue Mar 31 2020 10:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86801 * 119.99751 * 2 1 4 4 H 1.48499 * 109.47273 * 269.99875 * 3 2 1 5 5 H 1.48498 * 109.47382 * 30.00225 * 3 2 1 6 6 H 1.48507 * 109.46810 * 150.00090 * 3 2 1 7 7 C 1.38630 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99757 * 0.02562 * 7 2 1 9 9 O 1.34818 * 119.99869 * 179.97438 * 7 2 1 10 10 C 1.35759 * 116.99890 * 185.05696 * 9 7 2 11 11 C 1.38917 * 120.00007 * 354.46043 * 10 9 7 12 12 C 1.37993 * 119.99849 * 180.25206 * 11 10 9 13 13 C 1.38915 * 119.99896 * 359.45560 * 12 11 10 14 14 N 1.40125 * 119.99870 * 180.27560 * 13 12 11 15 15 N 1.40071 * 126.06406 * 144.96150 * 14 13 12 16 16 C 1.31172 * 108.40464 * 179.87504 * 15 14 13 17 17 O 1.35956 * 125.81088 * 180.10227 * 16 15 14 18 18 C 1.42897 * 117.00365 * 0.32816 * 17 16 15 19 19 C 1.53000 * 109.47415 * 180.02562 * 18 17 16 20 20 C 1.52995 * 117.49775 * 243.74653 * 19 18 17 21 21 C 1.53002 * 117.49855 * 175.08969 * 19 18 17 22 22 C 1.40199 * 108.37140 * 0.38267 * 16 15 14 23 23 C 1.36123 * 107.82982 * 359.75537 * 22 16 15 24 24 N 1.39147 * 126.24106 * 180.02562 * 23 22 16 25 25 C 1.38917 * 120.00030 * 0.54441 * 13 12 11 26 26 C 1.37985 * 119.99823 * 359.72893 * 25 13 12 27 27 H 0.97000 * 120.00052 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99990 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.99806 * 179.69978 * 12 11 10 30 30 H 1.08998 * 109.47322 * 300.00359 * 18 17 16 31 31 H 1.09005 * 109.47136 * 59.99446 * 18 17 16 32 32 H 1.08995 * 115.54739 * 29.41563 * 19 18 17 33 33 H 1.09010 * 117.50091 * 359.97438 * 20 19 18 34 34 H 1.09000 * 117.49932 * 145.01702 * 20 19 18 35 35 H 1.09006 * 117.49538 * 214.97847 * 21 19 18 36 36 H 1.09001 * 117.50019 * 359.97438 * 21 19 18 37 37 H 1.08002 * 126.07899 * 179.77514 * 22 16 15 38 38 H 0.97003 * 120.00217 * 179.97438 * 24 23 22 39 39 H 0.96998 * 120.00092 * 359.97438 * 24 23 22 40 40 H 1.08000 * 119.99999 * 179.70709 * 25 13 12 41 41 H 1.08007 * 119.99648 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1358 0.0005 9 8 3.3571 -1.2006 0.0000 10 6 3.9734 -2.4055 -0.1060 11 6 3.2218 -3.5738 -0.0918 12 6 3.8487 -4.7988 -0.1943 13 6 5.2304 -4.8633 -0.3232 14 7 5.8664 -6.1070 -0.4332 15 7 7.0034 -6.3866 -1.2021 16 6 7.3043 -7.6543 -1.0506 17 8 8.3469 -8.3001 -1.6374 18 6 9.1931 -7.5255 -2.4895 19 6 10.3011 -8.4166 -3.0546 20 6 11.7427 -8.0841 -2.6648 21 6 11.2482 -7.7985 -4.0850 22 6 6.3639 -8.2314 -0.1856 23 6 5.4856 -7.2592 0.1837 24 7 4.3972 -7.4146 1.0366 25 6 5.9820 -3.6951 -0.3375 26 6 5.3556 -2.4704 -0.2293 27 1 -0.4850 0.8400 -0.0004 28 1 2.1473 -3.5234 0.0041 29 1 3.2648 -5.7072 -0.1783 30 1 8.6045 -7.1143 -3.3095 31 1 9.6375 -6.7111 -1.9173 32 1 10.0424 -9.4684 -3.1760 33 1 11.9019 -7.2302 -2.0062 34 1 12.4326 -8.9172 -2.5302 35 1 11.6129 -8.4438 -4.8842 36 1 11.0817 -6.7571 -4.3607 37 1 6.3407 -9.2636 0.1315 38 1 3.8276 -6.6560 1.2393 39 1 4.2080 -8.2815 1.4285 40 1 7.0565 -3.7455 -0.4330 41 1 5.9400 -1.5621 -0.2400 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212605287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:43 Heat of formation + Delta-G solvation = 80.320439 kcal Electronic energy + Delta-G solvation = -24687.309362 eV Core-core repulsion = 20957.643732 eV Total energy + Delta-G solvation = -3729.665629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32555 -39.38024 -38.73756 -37.15602 -36.56885 -34.42434 -32.68250 -31.89464 -30.54624 -28.51856 -28.15675 -27.16783 -25.27413 -22.73418 -22.71538 -22.18022 -21.14641 -20.73793 -20.14172 -18.13188 -18.07445 -17.66652 -16.79936 -16.44036 -16.18594 -15.66137 -15.17347 -14.81475 -14.57827 -14.30846 -14.08204 -13.95615 -13.90455 -13.49017 -13.28643 -12.99709 -12.48545 -12.41066 -12.10331 -11.82566 -11.81413 -11.65403 -11.49376 -11.02349 -10.96209 -10.82355 -10.62948 -10.37458 -10.26935 -10.15338 -9.59650 -9.13604 -8.65277 -8.59711 -7.77791 -7.21387 -6.56975 -4.23230 1.54110 1.82628 2.37114 2.52329 2.97550 3.03005 3.13479 3.17791 3.31034 3.49878 3.91192 4.11440 4.20989 4.48451 4.57746 4.65160 4.70949 4.87793 4.95815 5.00685 5.21837 5.30635 5.34209 5.41361 5.47546 5.52724 5.56112 5.78718 5.79581 5.83735 5.90852 5.99366 6.06759 6.21261 6.43794 6.54049 6.74703 6.89021 6.95666 7.24916 7.36445 7.54135 7.57643 7.75383 7.86803 8.05791 8.76968 9.35776 10.49712 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.002574 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.242832 B =10875.372339 C =11996.127995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.393 4.393 8 H 0.109 0.891 9 O -0.207 6.207 10 C 0.158 3.842 11 C -0.200 4.200 12 C -0.091 4.091 13 C 0.058 3.942 14 N -0.316 5.316 15 N -0.352 5.352 16 C 0.285 3.715 17 O -0.288 6.288 18 C 0.096 3.904 19 C -0.156 4.156 20 C -0.177 4.177 21 C -0.170 4.170 22 C -0.352 4.352 23 C 0.389 3.611 24 N -0.853 5.853 25 C -0.061 4.061 26 C -0.173 4.173 27 H 0.282 0.718 28 H 0.144 0.856 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.149 0.851 38 H 0.406 0.594 39 H 0.414 0.586 40 H 0.126 0.874 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.871 -14.998 -1.622 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.468 4.468 8 H 0.126 0.874 9 O -0.111 6.111 10 C 0.104 3.896 11 C -0.220 4.220 12 C -0.112 4.112 13 C -0.033 4.033 14 N -0.101 5.101 15 N -0.190 5.190 16 C 0.081 3.919 17 O -0.193 6.193 18 C 0.021 3.979 19 C -0.174 4.174 20 C -0.214 4.214 21 C -0.207 4.207 22 C -0.386 4.386 23 C 0.162 3.838 24 N -0.405 5.405 25 C -0.081 4.081 26 C -0.193 4.193 27 H 0.092 0.908 28 H 0.161 0.839 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.167 0.833 38 H 0.238 0.762 39 H 0.245 0.755 40 H 0.144 0.856 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.225 -13.779 -2.205 20.653 hybrid contribution -0.431 -0.022 0.477 0.643 sum 14.794 -13.801 -1.729 20.306 Atomic orbital electron populations 1.69646 1.05612 1.28828 1.46761 1.24497 0.95067 0.99024 0.95313 0.86166 0.80355 0.81206 0.79145 1.19716 1.20622 1.18227 1.20778 0.76665 0.96772 1.52574 0.87419 1.83585 1.22828 1.25510 1.79179 1.19148 0.91665 0.85586 0.93180 1.21104 1.01372 0.90743 1.08755 1.20592 0.91294 0.97968 1.01355 1.17024 0.90612 0.81689 1.13976 1.44989 1.22652 1.05519 1.36971 1.77554 1.04982 1.14409 1.22047 1.20004 0.88663 0.89978 0.93275 1.86208 1.36818 1.35596 1.60666 1.22170 0.90129 0.92680 0.92942 1.22122 0.90436 1.00888 1.03962 1.23116 0.96489 1.03649 0.98132 1.23001 1.02678 1.02205 0.92849 1.19608 1.02334 1.00506 1.16174 1.17878 0.89416 0.86390 0.90103 1.41867 1.30154 1.15609 1.52834 1.20436 0.99212 0.89971 0.98487 1.20122 0.91952 0.97480 1.09724 0.90791 0.83858 0.86409 0.91360 0.91681 0.86630 0.88484 0.88491 0.88235 0.88390 0.83308 0.76170 0.75501 0.85641 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.00 13.96 55.48 0.77 -23.22 16 2 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 20.64 28.62 -169.99 -4.86 15.78 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.39 -10.38 9.94 30.88 0.31 -10.08 16 8 H 0.11 2.87 5.43 -52.49 -0.28 2.59 16 9 O -0.21 -5.11 8.58 0.05 0.00 -5.10 16 10 C 0.16 3.38 6.65 -39.08 -0.26 3.12 16 11 C -0.20 -3.92 9.16 -39.42 -0.36 -4.28 16 12 C -0.09 -1.55 8.43 -39.42 -0.33 -1.89 16 13 C 0.06 1.02 6.39 -83.56 -0.53 0.48 16 14 N -0.32 -5.35 3.76 -9.76 -0.04 -5.39 16 15 N -0.35 -6.08 11.72 30.55 0.36 -5.72 16 16 C 0.29 4.53 7.88 -17.10 -0.13 4.39 16 17 O -0.29 -4.10 10.22 -19.60 -0.20 -4.30 16 18 C 0.10 1.13 5.90 37.16 0.22 1.35 16 19 C -0.16 -1.44 6.05 -90.62 -0.55 -1.99 16 20 C -0.18 -1.37 10.18 -26.70 -0.27 -1.65 16 21 C -0.17 -1.27 10.25 -26.70 -0.27 -1.54 16 22 C -0.35 -5.07 10.85 -39.61 -0.43 -5.50 16 23 C 0.39 5.66 7.71 -152.69 -1.18 4.48 16 24 N -0.85 -9.19 8.70 31.25 0.27 -8.91 16 25 C -0.06 -1.08 9.76 -39.42 -0.38 -1.46 16 26 C -0.17 -3.25 9.98 -39.42 -0.39 -3.64 16 27 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.14 2.89 5.63 -52.49 -0.30 2.59 16 29 H 0.12 1.72 6.26 -52.48 -0.33 1.39 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.78 7.88 -51.93 -0.41 0.37 16 32 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.10 0.75 8.03 -51.92 -0.42 0.34 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.41 4.38 6.19 -40.82 -0.25 4.13 16 39 H 0.41 3.13 8.96 -40.82 -0.37 2.76 16 40 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 41 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -29.70 353.09 -7.92 -37.62 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -4.87 Total: 10.46 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -4.67 Total: -16.53 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 1.37 Total: -43.25 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.20 Total: -9.41 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.86 Total: 15.78 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.70 -7.92 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.942 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds