Wall clock time and date at job start Tue Mar 31 2020 10:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86801 * 119.99751 * 2 1 4 4 H 1.48499 * 109.47273 * 269.99875 * 3 2 1 5 5 H 1.48498 * 109.47382 * 30.00225 * 3 2 1 6 6 H 1.48507 * 109.46810 * 150.00090 * 3 2 1 7 7 C 1.38630 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99757 * 0.02562 * 7 2 1 9 9 O 1.34818 * 119.99869 * 179.97438 * 7 2 1 10 10 C 1.35759 * 116.99890 * 185.05696 * 9 7 2 11 11 C 1.38917 * 120.00007 * 354.46043 * 10 9 7 12 12 C 1.37993 * 119.99849 * 180.25206 * 11 10 9 13 13 C 1.38915 * 119.99896 * 359.45560 * 12 11 10 14 14 N 1.40125 * 119.99870 * 180.27560 * 13 12 11 15 15 N 1.40071 * 126.06406 * 144.96150 * 14 13 12 16 16 C 1.31172 * 108.40464 * 179.87504 * 15 14 13 17 17 O 1.35956 * 125.81088 * 180.10227 * 16 15 14 18 18 C 1.42897 * 117.00365 * 0.32816 * 17 16 15 19 19 C 1.53000 * 109.47415 * 180.02562 * 18 17 16 20 20 C 1.52995 * 117.49775 * 243.74653 * 19 18 17 21 21 C 1.53002 * 117.49855 * 175.08969 * 19 18 17 22 22 C 1.40199 * 108.37140 * 0.38267 * 16 15 14 23 23 C 1.36123 * 107.82982 * 359.75537 * 22 16 15 24 24 N 1.39147 * 126.24106 * 180.02562 * 23 22 16 25 25 C 1.38917 * 120.00030 * 0.54441 * 13 12 11 26 26 C 1.37985 * 119.99823 * 359.72893 * 25 13 12 27 27 H 0.97000 * 120.00052 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99990 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.99806 * 179.69978 * 12 11 10 30 30 H 1.08998 * 109.47322 * 300.00359 * 18 17 16 31 31 H 1.09005 * 109.47136 * 59.99446 * 18 17 16 32 32 H 1.08995 * 115.54739 * 29.41563 * 19 18 17 33 33 H 1.09010 * 117.50091 * 359.97438 * 20 19 18 34 34 H 1.09000 * 117.49932 * 145.01702 * 20 19 18 35 35 H 1.09006 * 117.49538 * 214.97847 * 21 19 18 36 36 H 1.09001 * 117.50019 * 359.97438 * 21 19 18 37 37 H 1.08002 * 126.07899 * 179.77514 * 22 16 15 38 38 H 0.97003 * 120.00217 * 179.97438 * 24 23 22 39 39 H 0.96998 * 120.00092 * 359.97438 * 24 23 22 40 40 H 1.08000 * 119.99999 * 179.70709 * 25 13 12 41 41 H 1.08007 * 119.99648 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1358 0.0005 9 8 3.3571 -1.2006 0.0000 10 6 3.9734 -2.4055 -0.1060 11 6 3.2218 -3.5738 -0.0918 12 6 3.8487 -4.7988 -0.1943 13 6 5.2304 -4.8633 -0.3232 14 7 5.8664 -6.1070 -0.4332 15 7 7.0034 -6.3866 -1.2021 16 6 7.3043 -7.6543 -1.0506 17 8 8.3469 -8.3001 -1.6374 18 6 9.1931 -7.5255 -2.4895 19 6 10.3011 -8.4166 -3.0546 20 6 11.7427 -8.0841 -2.6648 21 6 11.2482 -7.7985 -4.0850 22 6 6.3639 -8.2314 -0.1856 23 6 5.4856 -7.2592 0.1837 24 7 4.3972 -7.4146 1.0366 25 6 5.9820 -3.6951 -0.3375 26 6 5.3556 -2.4704 -0.2293 27 1 -0.4850 0.8400 -0.0004 28 1 2.1473 -3.5234 0.0041 29 1 3.2648 -5.7072 -0.1783 30 1 8.6045 -7.1143 -3.3095 31 1 9.6375 -6.7111 -1.9173 32 1 10.0424 -9.4684 -3.1760 33 1 11.9019 -7.2302 -2.0062 34 1 12.4326 -8.9172 -2.5302 35 1 11.6129 -8.4438 -4.8842 36 1 11.0817 -6.7571 -4.3607 37 1 6.3407 -9.2636 0.1315 38 1 3.8276 -6.6560 1.2393 39 1 4.2080 -8.2815 1.4285 40 1 7.0565 -3.7455 -0.4330 41 1 5.9400 -1.5621 -0.2400 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212605287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:43 Heat of formation + Delta-G solvation = 62.130298 kcal Electronic energy + Delta-G solvation = -24688.098146 eV Core-core repulsion = 20957.643732 eV Total energy + Delta-G solvation = -3730.454413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.55326 -40.94098 -39.81494 -38.43720 -37.64116 -35.47884 -34.54026 -33.34337 -32.05046 -29.68473 -29.41026 -28.34198 -27.04544 -24.19634 -23.61552 -23.27438 -22.10965 -21.98920 -21.22639 -19.88327 -19.36717 -19.21606 -18.03228 -17.49133 -17.28496 -16.76167 -16.51944 -16.07903 -15.85766 -15.75774 -15.56581 -15.44872 -14.90921 -14.75838 -14.57911 -14.34329 -14.18485 -14.01207 -13.37264 -13.29451 -12.94212 -12.66200 -12.61315 -12.40054 -12.31331 -12.02247 -11.76019 -11.66140 -11.39407 -11.31924 -11.02607 -10.88081 -10.09119 -10.07577 -8.87902 -8.71138 -8.51451 -6.23388 0.10885 0.32111 1.12439 1.21819 1.34246 1.37715 1.53252 1.86411 1.96991 2.27535 2.61792 2.79609 2.91112 2.96706 3.06407 3.63849 3.76177 3.83922 3.90197 3.97922 4.05032 4.21103 4.28335 4.35090 4.42589 4.52155 4.55062 4.64832 4.76479 4.80310 4.93406 4.99093 5.01796 5.12148 5.22482 5.25079 5.28186 5.37448 5.53395 5.68725 5.79210 6.03556 6.28694 6.51026 6.56086 6.82355 6.96831 7.51915 8.59001 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.002574 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.242832 B =10875.372339 C =11996.127995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.400 4.400 8 H 0.090 0.910 9 O -0.234 6.234 10 C 0.127 3.873 11 C -0.201 4.201 12 C -0.084 4.084 13 C 0.076 3.924 14 N -0.335 5.335 15 N -0.378 5.378 16 C 0.281 3.719 17 O -0.292 6.292 18 C 0.096 3.904 19 C -0.171 4.171 20 C -0.173 4.173 21 C -0.160 4.160 22 C -0.356 4.356 23 C 0.390 3.610 24 N -0.836 5.836 25 C -0.063 4.063 26 C -0.162 4.162 27 H 0.285 0.715 28 H 0.132 0.868 29 H 0.145 0.855 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.174 0.826 38 H 0.408 0.592 39 H 0.431 0.569 40 H 0.141 0.859 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.098 -16.748 -1.683 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.476 4.476 8 H 0.108 0.892 9 O -0.140 6.140 10 C 0.077 3.923 11 C -0.221 4.221 12 C -0.105 4.105 13 C -0.015 4.015 14 N -0.122 5.122 15 N -0.217 5.217 16 C 0.077 3.923 17 O -0.196 6.196 18 C 0.021 3.979 19 C -0.189 4.189 20 C -0.210 4.210 21 C -0.197 4.197 22 C -0.389 4.389 23 C 0.163 3.837 24 N -0.389 5.389 25 C -0.083 4.083 26 C -0.182 4.182 27 H 0.095 0.905 28 H 0.150 0.850 29 H 0.163 0.837 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.192 0.808 38 H 0.241 0.759 39 H 0.265 0.735 40 H 0.159 0.841 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 17.476 -15.608 -2.249 23.539 hybrid contribution -0.874 0.120 0.470 0.999 sum 16.602 -15.488 -1.779 22.775 Atomic orbital electron populations 1.69722 1.06827 1.29691 1.49406 1.25236 0.95827 1.02084 0.95410 0.85281 0.78998 0.77688 0.79219 1.19301 1.19437 1.18421 1.20739 0.77767 0.96384 1.52682 0.89208 1.83543 1.21551 1.26936 1.82006 1.19594 0.92795 0.85373 0.94587 1.21117 1.00947 0.91395 1.08637 1.20708 0.91359 0.97967 1.00434 1.17217 0.90824 0.82425 1.11042 1.44986 1.23254 1.05678 1.38278 1.77514 1.05556 1.15427 1.23236 1.20344 0.89015 0.89857 0.93092 1.86226 1.36614 1.35988 1.60811 1.22288 0.90301 0.93141 0.92206 1.22096 0.90371 1.00656 1.05769 1.23208 0.95428 1.04026 0.98338 1.23112 1.01057 1.02457 0.93087 1.19957 1.01730 1.01597 1.15663 1.18159 0.90014 0.85526 0.89954 1.41889 1.28710 1.16708 1.51569 1.20627 1.00027 0.89559 0.98080 1.20330 0.90958 0.98713 1.08179 0.90502 0.85001 0.83719 0.92203 0.92167 0.86381 0.88692 0.87050 0.86558 0.88341 0.80835 0.75943 0.73452 0.84121 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.19 13.96 21.61 0.30 -51.88 16 2 C 0.01 0.76 5.49 84.82 0.47 1.23 16 3 Si 0.97 43.26 28.62 68.60 1.96 45.22 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.40 -21.92 9.94 67.91 0.68 -21.24 16 8 H 0.09 5.06 5.43 -2.91 -0.02 5.04 16 9 O -0.23 -11.77 8.58 -22.73 -0.20 -11.97 16 10 C 0.13 5.47 6.65 22.59 0.15 5.62 16 11 C -0.20 -7.92 9.16 22.37 0.20 -7.71 16 12 C -0.08 -2.73 8.43 22.37 0.19 -2.54 16 13 C 0.08 2.54 6.39 38.14 0.24 2.78 16 14 N -0.34 -10.65 3.76 -184.80 -0.69 -11.34 16 15 N -0.38 -12.48 11.72 -170.52 -2.00 -14.48 16 16 C 0.28 8.43 7.88 85.27 0.67 9.11 16 17 O -0.29 -7.90 10.22 -93.06 -0.95 -8.85 16 18 C 0.10 2.17 5.90 71.98 0.42 2.59 16 19 C -0.17 -2.87 6.05 -10.79 -0.07 -2.94 16 20 C -0.17 -2.33 10.18 30.62 0.31 -2.02 16 21 C -0.16 -2.04 10.25 30.62 0.31 -1.73 16 22 C -0.36 -9.28 10.85 22.25 0.24 -9.04 16 23 C 0.39 10.29 7.71 131.16 1.01 11.30 16 24 N -0.84 -15.40 8.70 -55.05 -0.48 -15.87 16 25 C -0.06 -2.11 9.76 22.37 0.22 -1.89 16 26 C -0.16 -5.92 9.98 22.37 0.22 -5.70 16 27 H 0.29 14.96 8.31 -92.71 -0.77 14.19 16 28 H 0.13 5.52 5.63 -2.91 -0.02 5.50 16 29 H 0.15 3.87 6.26 -2.91 -0.02 3.85 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.39 7.88 -2.38 -0.02 1.38 16 32 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 1.32 8.03 -2.38 -0.02 1.30 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.41 7.61 6.19 -92.71 -0.57 7.03 16 39 H 0.43 5.02 8.96 -92.71 -0.83 4.19 16 40 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -65.02 353.09 2.92 -62.10 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.31 Total: 29.27 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 5.28 Total: -22.19 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -2.87 Total: -93.58 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.15 Total: -20.82 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.96 Total: 45.22 kcal Total: -65.02 2.92 -62.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.232 kcal (2) G-P(sol) polarization free energy of solvation -65.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds