Wall clock time and date at job start Tue Mar 31 2020 11:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00131 * 2 1 4 4 C 1.50699 * 109.47011 * 180.02562 * 3 2 1 5 5 C 1.38322 * 119.95959 * 270.25042 * 4 3 2 6 6 C 1.38275 * 120.15168 * 180.25614 * 5 4 3 7 7 C 1.38116 * 120.07361 * 359.49240 * 6 5 4 8 8 C 1.50704 * 120.03453 * 180.23280 * 7 6 5 9 9 C 1.38911 * 119.92432 * 0.25698 * 7 6 5 10 10 N 1.39701 * 120.07357 * 180.02562 * 9 7 6 11 11 C 1.39812 * 120.00125 * 172.61080 * 10 9 7 12 12 C 1.39425 * 119.91777 * 137.42478 * 11 10 9 13 13 C 1.38359 * 120.46076 * 179.97438 * 12 11 10 14 14 C 1.38013 * 120.29440 * 0.02562 * 13 12 11 15 15 F 1.35093 * 120.09307 * 179.97438 * 14 13 12 16 16 C 1.41018 * 119.82142 * 359.97415 * 14 13 12 17 17 C 1.41290 * 120.22946 * 180.02562 * 16 14 13 18 18 H 1.08009 * 119.99750 * 329.51902 * 17 16 14 19 19 C 1.39914 * 120.00539 * 149.52087 * 17 16 14 20 20 N 1.30862 * 119.99581 * 348.95641 * 19 17 16 21 21 Si 1.86796 * 120.00207 * 168.95651 * 19 17 16 22 22 H 1.48499 * 109.47163 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47267 * 120.00094 * 21 19 17 24 24 H 1.48499 * 109.46935 * 239.99993 * 21 19 17 25 25 C 1.38193 * 119.91084 * 317.15530 * 11 10 9 26 26 C 1.38068 * 119.96542 * 90.00378 * 4 3 2 27 27 H 1.08998 * 109.47197 * 300.00270 * 1 2 3 28 28 H 1.09007 * 109.47076 * 59.99827 * 1 2 3 29 29 H 1.09001 * 109.47493 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47140 * 59.99988 * 3 2 1 31 31 H 1.09000 * 109.47328 * 300.00256 * 3 2 1 32 32 H 1.07996 * 119.92515 * 0.02908 * 5 4 3 33 33 H 1.07995 * 119.95953 * 179.77395 * 6 5 4 34 34 H 1.09002 * 109.46906 * 90.00084 * 8 7 6 35 35 H 1.09001 * 109.46792 * 209.99956 * 8 7 6 36 36 H 1.08995 * 109.47241 * 329.99831 * 8 7 6 37 37 H 0.97006 * 120.00068 * 352.60290 * 10 9 7 38 38 H 1.07993 * 119.76927 * 0.02562 * 12 11 10 39 39 H 1.08004 * 119.85282 * 180.02562 * 13 12 11 40 40 H 0.97002 * 119.99758 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.14407 * 359.97410 * 25 11 10 42 42 H 1.08003 * 120.03799 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 -0.0006 5 6 4.2012 1.1263 1.1975 6 6 5.5801 1.0224 1.2015 7 6 6.2735 0.9676 0.0084 8 6 7.7759 0.8490 0.0138 9 6 5.5847 1.0224 -1.1967 10 7 6.2829 0.9666 -2.4054 11 6 5.5844 0.8660 -3.6123 12 6 5.9810 1.6274 -4.7109 13 6 5.2981 1.5362 -5.9108 14 6 4.2150 0.6896 -6.0328 15 9 3.5509 0.6041 -7.2061 16 6 3.8035 -0.0861 -4.9294 17 6 2.6962 -0.9561 -5.0450 18 1 1.8879 -0.7148 -5.7195 19 6 2.6466 -2.1302 -4.2856 20 7 3.7083 -2.5347 -3.6363 21 14 1.0650 -3.1203 -4.1987 22 1 0.0185 -2.4542 -5.0150 23 1 1.3076 -4.4879 -4.7243 24 1 0.6115 -3.2057 -2.7873 25 6 4.5060 0.0079 -3.7149 26 6 4.1995 1.1321 -1.1970 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.6611 1.1644 2.1319 33 1 6.1149 0.9794 2.1388 34 1 8.0572 -0.2041 0.0152 35 1 8.1817 1.3324 -0.8749 36 1 8.1753 1.3330 0.9050 37 1 7.2525 0.9979 -2.4073 38 1 6.8276 2.2924 -4.6249 39 1 5.6140 2.1303 -6.7556 40 1 3.6741 -3.3489 -3.1101 41 1 4.2021 -0.5852 -2.8650 42 1 3.6609 1.1754 -2.1322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213583071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:32 Heat of formation + Delta-G solvation = -48.023730 kcal Electronic energy + Delta-G solvation = -26290.195855 eV Core-core repulsion = 22535.044843 eV Total energy + Delta-G solvation = -3755.151012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.23522 -39.71839 -37.86682 -37.18742 -34.82973 -33.55589 -32.72320 -30.02719 -29.27219 -28.56872 -27.42258 -26.12249 -25.30942 -23.95138 -22.18151 -21.69698 -20.32435 -19.97800 -17.64920 -16.76565 -16.16920 -16.11086 -16.05177 -15.39736 -15.20996 -14.97302 -14.53208 -14.47122 -14.02268 -13.91958 -13.66092 -13.42040 -12.92264 -12.65952 -12.44569 -12.21397 -12.12684 -11.82399 -11.77530 -11.73781 -11.59124 -11.29217 -11.16999 -10.95658 -10.81767 -10.58184 -10.48511 -10.12999 -9.97210 -9.51259 -9.45159 -9.26443 -8.26660 -7.74709 -7.56407 -6.80893 -6.42746 -4.48467 1.68686 1.94689 2.63387 2.72458 3.07783 3.11921 3.13842 3.88788 3.92124 4.05322 4.47290 4.56058 5.11033 5.13002 5.31363 5.36628 5.38984 5.46936 5.52671 5.55652 5.65783 5.79783 5.80907 5.84197 5.86272 5.96589 6.03441 6.14596 6.29996 6.35656 6.41264 6.74935 6.84099 6.87930 6.89602 7.03561 7.10143 7.14140 7.35772 7.40694 7.45306 7.66463 7.83814 7.93505 8.13674 8.30716 8.56811 8.71925 8.77408 10.14047 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009208 B = 0.006552 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.174455 B = 4272.318642 C = 6186.365150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.105 3.895 4 C -0.058 4.058 5 C -0.158 4.158 6 C -0.086 4.086 7 C -0.161 4.161 8 C -0.102 4.102 9 C 0.217 3.783 10 N -0.679 5.679 11 C 0.153 3.847 12 C -0.240 4.240 13 C -0.107 4.107 14 C -0.036 4.036 15 F -0.163 7.163 16 C 0.100 3.900 17 C -0.452 4.452 18 H 0.083 0.917 19 C 0.077 3.923 20 N -0.786 5.786 21 Si 0.910 3.090 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.268 1.268 25 C -0.162 4.162 26 C -0.152 4.152 27 H 0.036 0.964 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.399 0.601 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.283 0.717 41 H 0.139 0.861 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.722 5.228 9.498 10.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.029 3.971 4 C -0.058 4.058 5 C -0.178 4.178 6 C -0.104 4.104 7 C -0.166 4.166 8 C -0.159 4.159 9 C 0.114 3.886 10 N -0.301 5.301 11 C 0.059 3.941 12 C -0.262 4.262 13 C -0.127 4.127 14 C -0.056 4.056 15 F -0.142 7.142 16 C 0.096 3.904 17 C -0.481 4.481 18 H 0.101 0.899 19 C -0.142 4.142 20 N -0.411 5.411 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.193 1.193 25 C -0.184 4.184 26 C -0.174 4.174 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.235 0.765 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.094 0.906 41 H 0.157 0.843 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.800 4.846 9.485 10.681 hybrid contribution -0.495 -0.368 -0.195 0.647 sum 0.305 4.478 9.290 10.318 Atomic orbital electron populations 1.22731 0.81560 1.02639 0.99645 1.88037 1.19094 1.27259 1.95281 1.21319 0.90325 0.85159 1.00314 1.19256 0.93402 1.00151 0.93038 1.20646 0.94001 1.06386 0.96814 1.20584 0.93796 0.99669 0.96368 1.19323 0.95633 1.09830 0.91796 1.20560 0.91777 1.01794 1.01746 1.17582 0.91412 0.94274 0.85299 1.42140 1.07546 1.78434 1.02000 1.17577 0.95577 0.96437 0.84529 1.19973 1.05684 1.06661 0.93858 1.20292 0.95905 0.99233 0.97273 1.17929 0.97380 1.08166 0.82162 1.91270 1.80618 1.96109 1.46226 1.17452 0.93010 0.90829 0.89100 1.19501 1.04234 1.03383 1.20988 0.89915 1.25862 0.97462 0.97718 0.93119 1.69767 1.28269 1.20723 1.22318 0.86211 0.81842 0.79288 0.79239 1.18342 1.19888 1.19273 1.21221 0.98962 0.99668 0.98554 1.21069 0.92595 1.04771 0.98965 0.94508 0.93890 0.89848 0.92977 0.92443 0.86951 0.86579 0.91697 0.92492 0.91889 0.76489 0.88320 0.87813 0.90633 0.84308 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.68 10.69 -35.23 -0.38 -7.06 16 3 C 0.11 1.66 6.06 36.00 0.22 1.88 16 4 C -0.06 -1.01 5.51 -104.65 -0.58 -1.59 16 5 C -0.16 -2.45 9.70 -39.54 -0.38 -2.84 16 6 C -0.09 -1.26 9.70 -39.61 -0.38 -1.64 16 7 C -0.16 -2.55 5.90 -104.42 -0.62 -3.17 16 8 C -0.10 -1.27 9.63 36.01 0.35 -0.92 16 9 C 0.22 4.04 6.40 -83.76 -0.54 3.51 16 10 N -0.68 -12.79 5.39 -8.44 -0.05 -12.83 16 11 C 0.15 3.36 5.84 -83.79 -0.49 2.87 16 12 C -0.24 -5.06 9.97 -39.09 -0.39 -5.45 16 13 C -0.11 -2.38 10.00 -39.62 -0.40 -2.78 16 14 C -0.04 -0.90 7.31 -38.61 -0.28 -1.18 16 15 F -0.16 -4.09 16.77 2.25 0.04 -4.06 16 16 C 0.10 2.64 5.53 -106.78 -0.59 2.05 16 17 C -0.45 -12.04 8.73 -37.80 -0.33 -12.37 16 18 H 0.08 2.18 7.79 -52.48 -0.41 1.77 16 19 C 0.08 1.95 5.24 -17.34 -0.09 1.86 16 20 N -0.79 -20.38 10.96 55.55 0.61 -19.77 16 21 Si 0.91 19.06 29.57 -169.99 -5.03 14.03 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 C -0.16 -4.04 5.97 -38.70 -0.23 -4.27 16 26 C -0.15 -3.01 7.72 -39.38 -0.30 -3.31 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.67 6.46 -51.93 -0.34 0.33 16 36 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.40 6.45 6.79 -40.82 -0.28 6.17 16 38 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 40 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 41 H 0.14 3.68 5.02 -52.49 -0.26 3.41 16 42 H 0.14 3.10 5.41 -52.48 -0.28 2.82 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -28.76 353.72 -8.74 -37.50 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -5.35 Total: 12.69 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -3.92 Total: -25.83 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.56 Total: -32.60 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.38 Total: -7.06 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.04 Total: -4.06 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.76 -8.74 -37.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213583071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.522 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds