Wall clock time and date at job start Tue Mar 31 2020 11:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00131 * 2 1 4 4 C 1.50699 * 109.47011 * 180.02562 * 3 2 1 5 5 C 1.38322 * 119.95959 * 270.25042 * 4 3 2 6 6 C 1.38275 * 120.15168 * 180.25614 * 5 4 3 7 7 C 1.38116 * 120.07361 * 359.49240 * 6 5 4 8 8 C 1.50704 * 120.03453 * 180.23280 * 7 6 5 9 9 C 1.38911 * 119.92432 * 0.25698 * 7 6 5 10 10 N 1.39701 * 120.07357 * 180.02562 * 9 7 6 11 11 C 1.39812 * 120.00125 * 172.61080 * 10 9 7 12 12 C 1.39425 * 119.91777 * 137.42478 * 11 10 9 13 13 C 1.38359 * 120.46076 * 179.97438 * 12 11 10 14 14 C 1.38013 * 120.29440 * 0.02562 * 13 12 11 15 15 F 1.35093 * 120.09307 * 179.97438 * 14 13 12 16 16 C 1.41018 * 119.82142 * 359.97415 * 14 13 12 17 17 C 1.41290 * 120.22946 * 180.02562 * 16 14 13 18 18 H 1.08009 * 119.99750 * 329.51902 * 17 16 14 19 19 C 1.39914 * 120.00539 * 149.52087 * 17 16 14 20 20 N 1.30862 * 119.99581 * 348.95641 * 19 17 16 21 21 Si 1.86796 * 120.00207 * 168.95651 * 19 17 16 22 22 H 1.48499 * 109.47163 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47267 * 120.00094 * 21 19 17 24 24 H 1.48499 * 109.46935 * 239.99993 * 21 19 17 25 25 C 1.38193 * 119.91084 * 317.15530 * 11 10 9 26 26 C 1.38068 * 119.96542 * 90.00378 * 4 3 2 27 27 H 1.08998 * 109.47197 * 300.00270 * 1 2 3 28 28 H 1.09007 * 109.47076 * 59.99827 * 1 2 3 29 29 H 1.09001 * 109.47493 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47140 * 59.99988 * 3 2 1 31 31 H 1.09000 * 109.47328 * 300.00256 * 3 2 1 32 32 H 1.07996 * 119.92515 * 0.02908 * 5 4 3 33 33 H 1.07995 * 119.95953 * 179.77395 * 6 5 4 34 34 H 1.09002 * 109.46906 * 90.00084 * 8 7 6 35 35 H 1.09001 * 109.46792 * 209.99956 * 8 7 6 36 36 H 1.08995 * 109.47241 * 329.99831 * 8 7 6 37 37 H 0.97006 * 120.00068 * 352.60290 * 10 9 7 38 38 H 1.07993 * 119.76927 * 0.02562 * 12 11 10 39 39 H 1.08004 * 119.85282 * 180.02562 * 13 12 11 40 40 H 0.97002 * 119.99758 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.14407 * 359.97410 * 25 11 10 42 42 H 1.08003 * 120.03799 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 -0.0006 5 6 4.2012 1.1263 1.1975 6 6 5.5801 1.0224 1.2015 7 6 6.2735 0.9676 0.0084 8 6 7.7759 0.8490 0.0138 9 6 5.5847 1.0224 -1.1967 10 7 6.2829 0.9666 -2.4054 11 6 5.5844 0.8660 -3.6123 12 6 5.9810 1.6274 -4.7109 13 6 5.2981 1.5362 -5.9108 14 6 4.2150 0.6896 -6.0328 15 9 3.5509 0.6041 -7.2061 16 6 3.8035 -0.0861 -4.9294 17 6 2.6962 -0.9561 -5.0450 18 1 1.8879 -0.7148 -5.7195 19 6 2.6466 -2.1302 -4.2856 20 7 3.7083 -2.5347 -3.6363 21 14 1.0650 -3.1203 -4.1987 22 1 0.0185 -2.4542 -5.0150 23 1 1.3076 -4.4879 -4.7243 24 1 0.6115 -3.2057 -2.7873 25 6 4.5060 0.0079 -3.7149 26 6 4.1995 1.1321 -1.1970 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.6611 1.1644 2.1319 33 1 6.1149 0.9794 2.1388 34 1 8.0572 -0.2041 0.0152 35 1 8.1817 1.3324 -0.8749 36 1 8.1753 1.3330 0.9050 37 1 7.2525 0.9979 -2.4073 38 1 6.8276 2.2924 -4.6249 39 1 5.6140 2.1303 -6.7556 40 1 3.6741 -3.3489 -3.1101 41 1 4.2021 -0.5852 -2.8650 42 1 3.6609 1.1754 -2.1322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213583071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:31 Heat of formation + Delta-G solvation = -62.722020 kcal Electronic energy + Delta-G solvation = -26290.833221 eV Core-core repulsion = 22535.044843 eV Total energy + Delta-G solvation = -3755.788377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.18599 -41.10978 -39.40744 -38.56565 -36.43274 -35.30823 -33.99324 -31.84432 -30.76176 -29.73356 -29.07542 -27.32462 -27.10980 -25.14012 -23.63653 -23.46678 -21.93480 -21.42605 -19.44124 -18.19434 -17.94512 -17.73308 -17.35539 -16.92780 -16.70240 -16.33061 -16.25210 -15.96701 -15.74305 -15.30178 -14.94264 -14.77713 -14.58545 -14.27298 -13.87763 -13.75446 -13.44047 -13.31662 -13.27570 -13.10930 -12.90783 -12.84929 -12.73628 -12.38315 -12.20818 -12.17151 -11.96116 -11.77972 -11.61222 -11.28336 -11.03187 -10.65353 -9.57005 -9.45361 -9.35244 -8.68572 -7.98922 -6.47369 0.38734 0.51009 0.85365 0.98394 1.32237 1.42674 1.47638 2.16382 2.50141 2.62444 2.76166 3.28707 3.47925 3.89860 3.97250 4.03501 4.16590 4.25073 4.30203 4.36205 4.41772 4.49261 4.53701 4.62569 4.67109 4.79234 4.79876 4.86171 4.87640 4.98098 5.00941 5.08003 5.20507 5.29888 5.34344 5.48078 5.63255 5.66676 5.75786 5.82411 6.00868 6.02883 6.11881 6.23379 6.36452 6.61855 6.78430 6.87567 6.98854 8.27212 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009208 B = 0.006552 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.174455 B = 4272.318642 C = 6186.365150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.105 3.895 4 C -0.075 4.075 5 C -0.153 4.153 6 C -0.083 4.083 7 C -0.156 4.156 8 C -0.102 4.102 9 C 0.189 3.811 10 N -0.676 5.676 11 C 0.159 3.841 12 C -0.227 4.227 13 C -0.103 4.103 14 C -0.069 4.069 15 F -0.170 7.170 16 C 0.070 3.930 17 C -0.491 4.491 18 H 0.069 0.931 19 C 0.040 3.960 20 N -0.817 5.817 21 Si 0.974 3.026 22 H -0.259 1.259 23 H -0.262 1.262 24 H -0.261 1.261 25 C -0.171 4.171 26 C -0.181 4.181 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.141 0.859 33 H 0.156 0.844 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.412 0.588 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.287 0.713 41 H 0.117 0.883 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 6.022 12.032 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.029 3.971 4 C -0.076 4.076 5 C -0.173 4.173 6 C -0.101 4.101 7 C -0.161 4.161 8 C -0.158 4.158 9 C 0.088 3.912 10 N -0.300 5.300 11 C 0.064 3.936 12 C -0.249 4.249 13 C -0.122 4.122 14 C -0.090 4.090 15 F -0.150 7.150 16 C 0.067 3.933 17 C -0.521 4.521 18 H 0.088 0.912 19 C -0.175 4.175 20 N -0.443 5.443 21 Si 0.795 3.205 22 H -0.182 1.182 23 H -0.187 1.187 24 H -0.185 1.185 25 C -0.194 4.194 26 C -0.203 4.203 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.159 0.841 33 H 0.174 0.826 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.251 0.749 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.098 0.902 41 H 0.135 0.865 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.175 5.658 12.041 13.481 hybrid contribution -0.821 -0.484 -0.863 1.285 sum 1.354 5.174 11.178 12.392 Atomic orbital electron populations 1.22929 0.79684 1.03474 1.01070 1.87972 1.21362 1.28443 1.95549 1.21397 0.89605 0.84780 1.01337 1.19544 0.94453 1.00440 0.93166 1.21039 0.94748 1.04528 0.96945 1.21090 0.93684 0.97809 0.97522 1.19774 0.97603 1.07770 0.90919 1.20650 0.89191 1.02449 1.03536 1.17833 0.91239 0.95983 0.86173 1.41983 1.07983 1.78931 1.01130 1.17676 0.94634 0.95087 0.86187 1.20408 1.05886 1.05765 0.92807 1.20649 0.94473 0.98324 0.98750 1.18254 0.98934 1.09828 0.81946 1.91231 1.81014 1.96314 1.46404 1.17792 0.93718 0.91612 0.90203 1.19611 1.04792 1.05024 1.22638 0.91238 1.26612 1.00490 0.98139 0.92292 1.69828 1.29927 1.21336 1.23168 0.85265 0.77821 0.78003 0.79435 1.18206 1.18682 1.18520 1.21022 1.00361 1.00575 0.97394 1.20951 0.93495 1.07361 0.98478 0.91415 0.94081 0.89390 0.89601 0.93620 0.84088 0.82612 0.91355 0.91889 0.88993 0.74892 0.84506 0.84637 0.90246 0.86499 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -14.76 10.69 -148.98 -1.59 -16.36 16 3 C 0.10 3.32 6.06 71.24 0.43 3.75 16 4 C -0.08 -2.63 5.51 -19.89 -0.11 -2.74 16 5 C -0.15 -4.35 9.70 22.30 0.22 -4.14 16 6 C -0.08 -2.15 9.70 22.25 0.22 -1.93 16 7 C -0.16 -4.58 5.90 -19.73 -0.12 -4.70 16 8 C -0.10 -2.17 9.63 71.24 0.69 -1.48 16 9 C 0.19 6.99 6.40 38.22 0.24 7.23 16 10 N -0.68 -25.13 5.39 -180.61 -0.97 -26.10 16 11 C 0.16 7.12 5.84 38.14 0.22 7.34 16 12 C -0.23 -9.31 9.97 22.58 0.23 -9.08 16 13 C -0.10 -4.50 10.00 22.25 0.22 -4.27 16 14 C -0.07 -3.60 7.31 22.90 0.17 -3.44 16 15 F -0.17 -8.92 16.77 44.97 0.75 -8.16 16 16 C 0.07 3.94 5.53 -21.26 -0.12 3.82 16 17 C -0.49 -27.95 8.73 23.43 0.20 -27.75 16 18 H 0.07 3.96 7.79 -2.91 -0.02 3.93 16 19 C 0.04 2.12 5.24 85.24 0.45 2.57 16 20 N -0.82 -44.45 10.96 21.82 0.24 -44.21 16 21 Si 0.97 40.64 29.57 68.60 2.03 42.67 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 C -0.17 -8.98 5.97 22.84 0.14 -8.84 16 26 C -0.18 -7.41 7.72 22.40 0.17 -7.23 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 2.06 8.09 -2.39 -0.02 2.05 16 31 H 0.05 1.50 8.08 -2.39 -0.02 1.48 16 32 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.27 6.46 -2.39 -0.02 1.25 16 36 H 0.09 1.45 8.09 -2.39 -0.02 1.43 16 37 H 0.41 12.64 6.79 -92.70 -0.63 12.01 16 38 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 39 H 0.14 5.00 8.06 -2.91 -0.02 4.97 16 40 H 0.29 14.33 8.30 -92.71 -0.77 13.56 16 41 H 0.12 6.62 5.02 -2.91 -0.01 6.61 16 42 H 0.10 4.94 5.41 -2.91 -0.02 4.92 16 Total: -1.00 -67.19 353.72 5.38 -61.81 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: 0.42 Total: 39.36 kcal Atomic # 6 Polarization: -53.50 SS G_CDS: 4.50 Total: -49.01 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -0.73 Total: -70.32 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.59 Total: -16.36 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 0.75 Total: -8.16 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -67.19 5.38 -61.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213583071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.910 kcal (2) G-P(sol) polarization free energy of solvation -67.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds