Wall clock time and date at job start Tue Mar 31 2020 11:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38118 * 119.96275 * 2 1 4 4 C 1.50708 * 120.03850 * 0.02562 * 3 2 1 5 5 C 1.38905 * 119.92276 * 180.24916 * 3 2 1 6 6 N 1.39706 * 120.07413 * 179.72962 * 5 3 2 7 7 C 1.39803 * 120.00239 * 80.55823 * 6 5 3 8 8 C 1.39433 * 119.91876 * 0.15770 * 7 6 5 9 9 C 1.38354 * 120.46751 * 179.97438 * 8 7 6 10 10 C 1.38011 * 120.28778 * 0.02849 * 9 8 7 11 11 F 1.35102 * 120.08512 * 179.97438 * 10 9 8 12 12 C 1.41020 * 119.82824 * 359.97438 * 10 9 8 13 13 C 1.41286 * 120.22775 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00402 * 26.36828 * 13 12 10 15 15 C 1.39915 * 119.99923 * 206.37163 * 13 12 10 16 16 N 1.30860 * 119.99931 * 17.96068 * 15 13 12 17 17 Si 1.86801 * 120.00443 * 197.96155 * 15 13 12 18 18 H 1.48508 * 109.46695 * 59.99863 * 17 15 13 19 19 H 1.48499 * 109.47242 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46848 * 300.00220 * 17 15 13 21 21 C 1.38182 * 119.91875 * 179.88908 * 7 6 5 22 22 C 1.38949 * 119.85003 * 359.74862 * 5 3 2 23 23 C 1.38083 * 119.92105 * 0.02562 * 22 5 3 24 24 C 1.38266 * 119.95966 * 179.72244 * 2 1 3 25 25 C 1.50702 * 119.92676 * 0.02562 * 24 2 1 26 26 O 1.42896 * 109.47202 * 179.72331 * 25 24 2 27 27 H 1.09001 * 109.47028 * 270.27596 * 1 2 3 28 28 H 1.08998 * 109.46917 * 30.27414 * 1 2 3 29 29 H 1.08995 * 109.47056 * 150.27569 * 1 2 3 30 30 H 1.08998 * 109.47176 * 270.22832 * 4 3 2 31 31 H 1.08999 * 109.46991 * 30.23074 * 4 3 2 32 32 H 1.09000 * 109.46794 * 150.22767 * 4 3 2 33 33 H 0.97004 * 119.99709 * 260.54890 * 6 5 3 34 34 H 1.08004 * 119.76152 * 0.02562 * 8 7 6 35 35 H 1.07994 * 119.85481 * 180.02562 * 9 8 7 36 36 H 0.97003 * 120.00245 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.14598 * 359.97438 * 21 7 6 38 38 H 1.07997 * 120.04517 * 179.97438 * 22 5 3 39 39 H 1.07994 * 119.95988 * 179.97438 * 23 22 5 40 40 H 1.09007 * 109.46863 * 59.72170 * 25 24 2 41 41 H 1.08997 * 109.47221 * 299.72491 * 25 24 2 42 42 H 0.96703 * 114.00050 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1966 0.0000 4 6 1.4434 2.5018 0.0006 5 6 3.5859 1.1956 -0.0052 6 7 4.2868 2.4041 -0.0110 7 6 4.4703 3.1115 1.1809 8 6 3.9558 2.6077 2.3749 9 6 4.1311 3.2981 3.5609 10 6 4.8178 4.4951 3.5746 11 9 4.9862 5.1661 4.7350 12 6 5.3433 5.0161 2.3741 13 6 6.0482 6.2405 2.3784 14 1 6.5551 6.5687 3.2739 15 6 6.0896 7.0280 1.2227 16 7 5.2167 6.8340 0.2672 17 14 7.3908 8.3562 1.0434 18 1 8.7401 7.7388 1.1053 19 1 7.2207 9.0428 -0.2623 20 1 7.2466 9.3422 2.1444 21 6 5.1658 4.3055 1.1736 22 6 4.2767 -0.0100 -0.0052 23 6 3.5807 -1.2026 -0.0004 24 6 2.1976 -1.1979 0.0058 25 6 1.4415 -2.5015 0.0115 26 8 2.3679 -3.5895 0.0104 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5095 30 1 1.2578 2.8146 -1.0269 31 1 0.4930 2.3724 0.5183 32 1 2.0345 3.2623 0.5108 33 1 4.6464 2.7523 -0.8419 34 1 3.4173 1.6715 2.3739 35 1 3.7288 2.8986 4.4801 36 1 5.2451 7.3802 -0.5339 37 1 5.5683 4.6931 0.2494 38 1 5.3566 -0.0144 -0.0096 39 1 4.1169 -2.1400 -0.0008 40 1 0.8113 -2.5599 -0.8760 41 1 0.8181 -2.5560 0.9040 42 1 1.9502 -4.4617 0.0135 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215251927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:47 Heat of formation + Delta-G solvation = -58.499877 kcal Electronic energy + Delta-G solvation = -25652.509718 eV Core-core repulsion = 21896.904426 eV Total energy + Delta-G solvation = -3755.605292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.06399 -40.00083 -37.86167 -36.77979 -34.90188 -33.48808 -33.07621 -31.15377 -29.71014 -27.99274 -27.57951 -25.97703 -25.26384 -24.83901 -21.56601 -20.87089 -20.62556 -19.71401 -17.68668 -17.38676 -16.54073 -15.91828 -15.77274 -15.49215 -15.25733 -15.02753 -14.90180 -14.10193 -13.86395 -13.74859 -13.58284 -13.03120 -12.80999 -12.72014 -12.59461 -12.50760 -12.50195 -11.85829 -11.71222 -11.58526 -11.50913 -11.42193 -11.16961 -11.08574 -10.91194 -10.68448 -10.52854 -10.39472 -10.14752 -9.44363 -9.33047 -8.86786 -8.34786 -8.13445 -7.53603 -6.86186 -6.28737 -4.41511 1.45711 1.59985 2.75162 2.91970 3.05481 3.09297 3.20889 3.83112 3.91673 4.02188 4.17519 4.57693 4.84695 5.02511 5.08821 5.13558 5.24668 5.32567 5.44395 5.53522 5.58975 5.76715 5.85919 5.93227 5.97423 6.02915 6.10323 6.19124 6.22298 6.47542 6.56288 6.65260 6.72287 6.88750 6.92512 6.96260 7.07959 7.17954 7.27686 7.41937 7.63035 7.69766 7.90400 8.02702 8.30725 8.55699 8.66312 8.77210 8.91520 10.13363 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020696 B = 0.003294 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.563092 B = 8497.818651 C = 8826.052993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.082 4.082 3 C -0.083 4.083 4 C -0.114 4.114 5 C 0.176 3.824 6 N -0.715 5.715 7 C 0.211 3.789 8 C -0.266 4.266 9 C -0.092 4.092 10 C -0.059 4.059 11 F -0.168 7.168 12 C 0.119 3.881 13 C -0.457 4.457 14 H 0.082 0.918 15 C 0.080 3.920 16 N -0.788 5.788 17 Si 0.909 3.091 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.208 4.208 22 C -0.130 4.130 23 C -0.094 4.094 24 C -0.105 4.105 25 C 0.123 3.877 26 O -0.569 6.569 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.400 0.600 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.281 0.719 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 -13.855 -5.282 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.085 4.085 4 C -0.170 4.170 5 C 0.083 3.917 6 N -0.346 5.346 7 C 0.115 3.885 8 C -0.288 4.288 9 C -0.112 4.112 10 C -0.080 4.080 11 F -0.147 7.147 12 C 0.115 3.885 13 C -0.486 4.486 14 H 0.100 0.900 15 C -0.139 4.139 16 N -0.412 5.412 17 Si 0.733 3.267 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.232 4.232 22 C -0.150 4.150 23 C -0.113 4.113 24 C -0.105 4.105 25 C 0.046 3.954 26 O -0.375 6.375 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.237 0.763 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.643 -13.330 -5.396 16.286 hybrid contribution 0.276 0.386 -0.242 0.532 sum -7.367 -12.945 -5.638 15.926 Atomic orbital electron populations 1.20822 0.91552 1.02563 1.02278 1.19297 0.95531 0.91535 1.01869 1.20112 0.93431 0.94871 1.00087 1.20767 0.99625 0.94807 1.01839 1.17340 0.89537 0.86261 0.98557 1.41787 1.62788 1.21667 1.08389 1.17571 0.95343 0.91227 0.84393 1.19721 1.14789 1.03073 0.91258 1.20249 0.99620 0.94180 0.97146 1.17789 1.11765 0.95994 0.82430 1.91248 1.95039 1.80856 1.47541 1.17278 0.89604 0.92384 0.89204 1.19447 1.28364 1.02798 0.97972 0.90018 1.25870 0.95049 0.98165 0.94815 1.69841 1.28901 1.35759 1.06723 0.86345 0.81680 0.80364 0.78262 1.18733 1.20315 1.18891 1.20471 1.09087 0.94353 0.99315 1.21551 1.00223 0.91925 1.01275 1.20750 0.93368 0.97770 0.99374 1.19406 0.94199 0.92796 1.04132 1.20844 0.90168 0.84637 0.99742 1.86474 1.36400 1.16833 1.97746 0.91157 0.91117 0.91976 0.91804 0.92049 0.89740 0.76320 0.88600 0.88312 0.90799 0.85990 0.85972 0.85374 0.92639 0.92574 0.77408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.77 36.01 0.32 -0.85 16 2 C -0.08 -1.10 5.88 -104.65 -0.62 -1.71 16 3 C -0.08 -1.30 5.47 -104.42 -0.57 -1.87 16 4 C -0.11 -1.75 8.94 36.01 0.32 -1.43 16 5 C 0.18 2.99 4.47 -83.76 -0.37 2.61 16 6 N -0.72 -13.28 4.74 -8.44 -0.04 -13.32 16 7 C 0.21 4.69 5.44 -83.80 -0.46 4.24 16 8 C -0.27 -5.94 8.93 -39.09 -0.35 -6.29 16 9 C -0.09 -2.16 10.00 -39.62 -0.40 -2.56 16 10 C -0.06 -1.53 7.31 -38.61 -0.28 -1.82 16 11 F -0.17 -4.38 16.73 2.25 0.04 -4.34 16 12 C 0.12 3.21 5.55 -106.78 -0.59 2.62 16 13 C -0.46 -12.32 8.75 -37.80 -0.33 -12.65 16 14 H 0.08 2.19 7.76 -52.48 -0.41 1.79 16 15 C 0.08 1.98 5.12 -17.34 -0.09 1.89 16 16 N -0.79 -19.79 11.11 55.55 0.62 -19.17 16 17 Si 0.91 18.66 29.60 -169.99 -5.03 13.63 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 21 C -0.21 -5.19 8.51 -38.70 -0.33 -5.52 16 22 C -0.13 -2.05 9.97 -39.37 -0.39 -2.44 16 23 C -0.09 -1.36 9.37 -39.61 -0.37 -1.73 16 24 C -0.11 -1.39 5.88 -104.58 -0.62 -2.01 16 25 C 0.12 1.20 6.15 36.01 0.22 1.42 16 26 O -0.57 -5.48 12.13 -35.23 -0.43 -5.91 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.69 6.72 -51.93 -0.35 0.34 16 29 H 0.06 0.50 6.62 -51.93 -0.34 0.16 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.83 6.72 -51.93 -0.35 0.48 16 32 H 0.08 1.58 6.11 -51.93 -0.32 1.26 16 33 H 0.40 6.95 8.83 -40.82 -0.36 6.59 16 34 H 0.10 2.05 6.70 -52.48 -0.35 1.70 16 35 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 37 H 0.12 3.09 6.33 -52.48 -0.33 2.76 16 38 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.13 1.75 7.00 -52.49 -0.37 1.38 16 40 H 0.06 0.45 7.47 -51.92 -0.39 0.06 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.38 1.69 9.12 45.56 0.42 2.11 16 LS Contribution 348.34 15.07 5.25 5.25 Total: -1.00 -29.56 348.34 -8.90 -38.45 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -4.40 Total: 13.51 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -4.90 Total: -28.10 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.58 Total: -32.49 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.43 Total: -5.91 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.04 Total: -4.34 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.56 -8.90 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215251927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.045 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds