Wall clock time and date at job start Tue Mar 31 2020 11:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38118 * 119.96275 * 2 1 4 4 C 1.50708 * 120.03850 * 0.02562 * 3 2 1 5 5 C 1.38905 * 119.92276 * 180.24916 * 3 2 1 6 6 N 1.39706 * 120.07413 * 179.72962 * 5 3 2 7 7 C 1.39803 * 120.00239 * 80.55823 * 6 5 3 8 8 C 1.39433 * 119.91876 * 0.15770 * 7 6 5 9 9 C 1.38354 * 120.46751 * 179.97438 * 8 7 6 10 10 C 1.38011 * 120.28778 * 0.02849 * 9 8 7 11 11 F 1.35102 * 120.08512 * 179.97438 * 10 9 8 12 12 C 1.41020 * 119.82824 * 359.97438 * 10 9 8 13 13 C 1.41286 * 120.22775 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00402 * 26.36828 * 13 12 10 15 15 C 1.39915 * 119.99923 * 206.37163 * 13 12 10 16 16 N 1.30860 * 119.99931 * 17.96068 * 15 13 12 17 17 Si 1.86801 * 120.00443 * 197.96155 * 15 13 12 18 18 H 1.48508 * 109.46695 * 59.99863 * 17 15 13 19 19 H 1.48499 * 109.47242 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46848 * 300.00220 * 17 15 13 21 21 C 1.38182 * 119.91875 * 179.88908 * 7 6 5 22 22 C 1.38949 * 119.85003 * 359.74862 * 5 3 2 23 23 C 1.38083 * 119.92105 * 0.02562 * 22 5 3 24 24 C 1.38266 * 119.95966 * 179.72244 * 2 1 3 25 25 C 1.50702 * 119.92676 * 0.02562 * 24 2 1 26 26 O 1.42896 * 109.47202 * 179.72331 * 25 24 2 27 27 H 1.09001 * 109.47028 * 270.27596 * 1 2 3 28 28 H 1.08998 * 109.46917 * 30.27414 * 1 2 3 29 29 H 1.08995 * 109.47056 * 150.27569 * 1 2 3 30 30 H 1.08998 * 109.47176 * 270.22832 * 4 3 2 31 31 H 1.08999 * 109.46991 * 30.23074 * 4 3 2 32 32 H 1.09000 * 109.46794 * 150.22767 * 4 3 2 33 33 H 0.97004 * 119.99709 * 260.54890 * 6 5 3 34 34 H 1.08004 * 119.76152 * 0.02562 * 8 7 6 35 35 H 1.07994 * 119.85481 * 180.02562 * 9 8 7 36 36 H 0.97003 * 120.00245 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.14598 * 359.97438 * 21 7 6 38 38 H 1.07997 * 120.04517 * 179.97438 * 22 5 3 39 39 H 1.07994 * 119.95988 * 179.97438 * 23 22 5 40 40 H 1.09007 * 109.46863 * 59.72170 * 25 24 2 41 41 H 1.08997 * 109.47221 * 299.72491 * 25 24 2 42 42 H 0.96703 * 114.00050 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1966 0.0000 4 6 1.4434 2.5018 0.0006 5 6 3.5859 1.1956 -0.0052 6 7 4.2868 2.4041 -0.0110 7 6 4.4703 3.1115 1.1809 8 6 3.9558 2.6077 2.3749 9 6 4.1311 3.2981 3.5609 10 6 4.8178 4.4951 3.5746 11 9 4.9862 5.1661 4.7350 12 6 5.3433 5.0161 2.3741 13 6 6.0482 6.2405 2.3784 14 1 6.5551 6.5687 3.2739 15 6 6.0896 7.0280 1.2227 16 7 5.2167 6.8340 0.2672 17 14 7.3908 8.3562 1.0434 18 1 8.7401 7.7388 1.1053 19 1 7.2207 9.0428 -0.2623 20 1 7.2466 9.3422 2.1444 21 6 5.1658 4.3055 1.1736 22 6 4.2767 -0.0100 -0.0052 23 6 3.5807 -1.2026 -0.0004 24 6 2.1976 -1.1979 0.0058 25 6 1.4415 -2.5015 0.0115 26 8 2.3679 -3.5895 0.0104 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5095 30 1 1.2578 2.8146 -1.0269 31 1 0.4930 2.3724 0.5183 32 1 2.0345 3.2623 0.5108 33 1 4.6464 2.7523 -0.8419 34 1 3.4173 1.6715 2.3739 35 1 3.7288 2.8986 4.4801 36 1 5.2451 7.3802 -0.5339 37 1 5.5683 4.6931 0.2494 38 1 5.3566 -0.0144 -0.0096 39 1 4.1169 -2.1400 -0.0008 40 1 0.8113 -2.5599 -0.8760 41 1 0.8181 -2.5560 0.9040 42 1 1.9502 -4.4617 0.0135 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215251927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:46 Heat of formation + Delta-G solvation = -75.368245 kcal Electronic energy + Delta-G solvation = -25653.241185 eV Core-core repulsion = 21896.904426 eV Total energy + Delta-G solvation = -3756.336759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.07143 -41.20132 -39.43488 -37.75871 -36.37465 -35.23243 -34.20907 -32.43021 -31.63274 -29.42810 -28.69842 -27.19563 -27.09142 -25.94892 -23.39553 -22.43699 -21.79617 -21.11486 -19.25258 -18.40900 -18.12244 -17.80116 -17.35812 -16.70413 -16.62742 -16.19852 -15.97181 -15.87400 -15.77627 -14.95104 -14.68976 -14.55100 -14.36538 -13.88482 -13.84761 -13.70471 -13.60356 -13.45966 -13.39613 -13.27890 -13.02599 -12.76535 -12.61779 -12.51893 -12.28777 -12.05571 -11.87190 -11.79656 -11.33874 -11.15934 -11.09244 -10.58678 -9.48722 -9.44895 -9.29926 -8.73306 -8.04809 -6.42353 0.30532 0.45416 0.91820 1.01029 1.37146 1.47872 1.52791 2.19830 2.59661 2.69773 2.78133 3.35204 3.57978 3.96328 4.00298 4.06163 4.14246 4.26636 4.29925 4.35906 4.49192 4.60670 4.66744 4.70572 4.76313 4.84183 4.87875 4.95961 4.98952 5.03427 5.08386 5.17700 5.23930 5.35692 5.41098 5.50211 5.65673 5.73326 5.75359 5.81418 5.95313 6.06336 6.12649 6.43204 6.75475 6.81343 6.97192 6.99496 7.07134 8.27903 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020696 B = 0.003294 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.563092 B = 8497.818651 C = 8826.052993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.095 4.095 4 C -0.108 4.108 5 C 0.144 3.856 6 N -0.704 5.704 7 C 0.229 3.771 8 C -0.260 4.260 9 C -0.086 4.086 10 C -0.099 4.099 11 F -0.175 7.175 12 C 0.094 3.906 13 C -0.498 4.498 14 H 0.068 0.932 15 C 0.044 3.956 16 N -0.810 5.810 17 Si 0.981 3.019 18 H -0.261 1.261 19 H -0.261 1.261 20 H -0.264 1.264 21 C -0.228 4.228 22 C -0.139 4.139 23 C -0.100 4.100 24 C -0.103 4.103 25 C 0.124 3.876 26 O -0.589 6.589 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.403 0.597 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.291 0.709 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 -15.837 -6.312 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.097 4.097 4 C -0.164 4.164 5 C 0.052 3.948 6 N -0.334 5.334 7 C 0.129 3.871 8 C -0.282 4.282 9 C -0.106 4.106 10 C -0.120 4.120 11 F -0.155 7.155 12 C 0.091 3.909 13 C -0.527 4.527 14 H 0.087 0.913 15 C -0.173 4.173 16 N -0.435 5.435 17 Si 0.801 3.199 18 H -0.185 1.185 19 H -0.185 1.185 20 H -0.188 1.188 21 C -0.252 4.252 22 C -0.159 4.159 23 C -0.119 4.119 24 C -0.103 4.103 25 C 0.047 3.953 26 O -0.398 6.398 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.240 0.760 34 H 0.129 0.871 35 H 0.141 0.859 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.153 0.847 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -9.370 -15.371 -6.451 19.123 hybrid contribution 0.677 0.778 0.013 1.032 sum -8.693 -14.593 -6.438 18.165 Atomic orbital electron populations 1.20914 0.88806 1.04121 1.03342 1.19641 0.97465 0.90615 1.00314 1.20216 0.92891 0.95909 1.00641 1.20694 0.99818 0.93741 1.02190 1.17526 0.90270 0.85523 1.01527 1.41712 1.62350 1.22014 1.07302 1.17576 0.93359 0.90319 0.85809 1.19876 1.14248 1.03262 0.90861 1.20522 0.98353 0.93138 0.98553 1.18065 1.14104 0.97545 0.82270 1.91204 1.95314 1.81227 1.47747 1.17629 0.90069 0.92965 0.90276 1.19612 1.30191 1.04035 0.98826 0.91344 1.26652 0.96722 1.00082 0.93842 1.69866 1.29724 1.36699 1.07171 0.85278 0.78526 0.77285 0.78794 1.18486 1.18451 1.18812 1.20374 1.10810 0.95604 0.98403 1.21560 1.00239 0.92208 1.01922 1.20895 0.94308 0.97300 0.99361 1.19899 0.93951 0.94709 1.01776 1.20908 0.89750 0.82927 1.01687 1.86411 1.37369 1.18228 1.97841 0.90144 0.90796 0.89331 0.90892 0.90055 0.93532 0.75990 0.87089 0.85872 0.89818 0.87046 0.86358 0.84716 0.90223 0.90706 0.74759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 8.77 71.24 0.62 -1.24 16 2 C -0.08 -1.91 5.88 -19.88 -0.12 -2.03 16 3 C -0.09 -2.83 5.47 -19.73 -0.11 -2.94 16 4 C -0.11 -3.20 8.94 71.24 0.64 -2.57 16 5 C 0.14 4.82 4.47 38.22 0.17 4.99 16 6 N -0.70 -26.62 4.74 -180.62 -0.86 -27.48 16 7 C 0.23 10.39 5.44 38.14 0.21 10.60 16 8 C -0.26 -11.65 8.93 22.59 0.20 -11.45 16 9 C -0.09 -4.08 10.00 22.24 0.22 -3.86 16 10 C -0.10 -5.36 7.31 22.90 0.17 -5.19 16 11 F -0.18 -9.55 16.73 44.97 0.75 -8.80 16 12 C 0.09 5.33 5.55 -21.26 -0.12 5.21 16 13 C -0.50 -28.18 8.75 23.43 0.21 -27.97 16 14 H 0.07 3.90 7.76 -2.91 -0.02 3.88 16 15 C 0.04 2.23 5.12 85.24 0.44 2.67 16 16 N -0.81 -41.72 11.11 21.82 0.24 -41.47 16 17 Si 0.98 38.85 29.60 68.60 2.03 40.88 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 21 C -0.23 -11.84 8.51 22.84 0.19 -11.65 16 22 C -0.14 -4.33 9.97 22.40 0.22 -4.11 16 23 C -0.10 -2.71 9.37 22.25 0.21 -2.50 16 24 C -0.10 -2.41 5.88 -19.84 -0.12 -2.53 16 25 C 0.12 1.88 6.15 71.24 0.44 2.32 16 26 O -0.59 -9.23 12.13 -148.98 -1.81 -11.03 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.17 6.72 -2.39 -0.02 1.15 16 29 H 0.09 0.98 6.62 -2.39 -0.02 0.96 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.08 2.03 6.72 -2.39 -0.02 2.02 16 32 H 0.05 1.74 6.11 -2.39 -0.01 1.73 16 33 H 0.40 14.44 8.83 -92.71 -0.82 13.62 16 34 H 0.11 4.64 6.70 -2.91 -0.02 4.62 16 35 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 36 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 37 H 0.11 5.92 6.33 -2.91 -0.02 5.90 16 38 H 0.12 3.64 8.06 -2.91 -0.02 3.61 16 39 H 0.14 3.44 7.00 -2.91 -0.02 3.42 16 40 H 0.08 0.87 7.47 -2.38 -0.02 0.85 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.40 2.06 9.12 -74.06 -0.68 1.38 16 Total: -1.00 -66.53 348.34 3.43 -63.10 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.41 Total: 37.06 kcal Atomic # 6 Polarization: -55.73 SS G_CDS: 3.48 Total: -52.25 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -0.61 Total: -68.95 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -1.81 Total: -11.03 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 0.75 Total: -8.80 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -66.53 3.43 -63.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215251927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.270 kcal (2) G-P(sol) polarization free energy of solvation -66.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds