Wall clock time and date at job start Tue Mar 31 2020 11:24:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35988 * 117.00056 * 2 1
4 4 C 1.38737 * 119.97821 * 359.97438 * 3 2 1
5 5 C 1.38073 * 120.01933 * 179.97438 * 4 3 2
6 6 C 1.38905 * 119.98039 * 0.25616 * 5 4 3
7 7 N 1.39947 * 120.01858 * 179.70138 * 6 5 4
8 8 C 1.39790 * 120.00032 * 256.95440 * 7 6 5
9 9 C 1.39429 * 119.91635 * 4.58196 * 8 7 6
10 10 C 1.38351 * 120.46379 * 179.97438 * 9 8 7
11 11 C 1.38012 * 120.29162 * 0.02562 * 10 9 8
12 12 F 1.35106 * 120.09135 * 179.97438 * 11 10 9
13 13 C 1.41025 * 119.82407 * 359.97438 * 11 10 9
14 14 C 1.41292 * 120.22401 * 180.02562 * 13 11 10
15 15 H 1.08000 * 120.00578 * 24.27187 * 14 13 11
16 16 C 1.39917 * 119.99486 * 204.27820 * 14 13 11
17 17 N 1.30852 * 120.00162 * 19.30902 * 16 14 13
18 18 Si 1.86803 * 119.99592 * 199.31402 * 16 14 13
19 19 H 1.48497 * 109.47081 * 59.99780 * 18 16 14
20 20 H 1.48502 * 109.47049 * 179.97438 * 18 16 14
21 21 H 1.48501 * 109.46787 * 299.99476 * 18 16 14
22 22 C 1.38186 * 119.91557 * 184.30062 * 8 7 6
23 23 C 1.38862 * 119.95640 * 359.44556 * 6 5 4
24 24 C 1.50702 * 120.00958 * 180.25414 * 23 6 5
25 25 C 1.38113 * 119.98057 * 0.57596 * 23 6 5
26 26 C 1.50703 * 119.99060 * 179.72496 * 25 23 6
27 27 H 1.08994 * 109.47024 * 299.99551 * 1 2 3
28 28 H 1.09002 * 109.47121 * 60.00163 * 1 2 3
29 29 H 1.09005 * 109.46642 * 180.02562 * 1 2 3
30 30 H 1.08001 * 119.99345 * 359.97438 * 4 3 2
31 31 H 1.08007 * 120.00722 * 179.97438 * 5 4 3
32 32 H 0.96999 * 119.99689 * 76.96308 * 7 6 5
33 33 H 1.08006 * 119.76989 * 359.97438 * 9 8 7
34 34 H 1.08002 * 119.85924 * 180.02562 * 10 9 8
35 35 H 0.97000 * 120.00161 * 180.02562 * 17 16 14
36 36 H 1.08001 * 120.15044 * 0.02813 * 22 8 7
37 37 H 1.08996 * 109.47663 * 270.32353 * 24 23 6
38 38 H 1.09003 * 109.46979 * 30.32129 * 24 23 6
39 39 H 1.09001 * 109.47396 * 150.31409 * 24 23 6
40 40 H 1.08999 * 109.46780 * 269.97758 * 26 25 23
41 41 H 1.08997 * 109.47204 * 29.97479 * 26 25 23
42 42 H 1.08996 * 109.47156 * 149.97623 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2117 0.0000
4 6 1.2904 2.3749 -0.0005
5 6 1.9163 3.6056 0.0000
6 6 3.3034 3.6788 -0.0043
7 7 3.9387 4.9258 -0.0101
8 6 4.4960 5.4208 -1.1927
9 6 4.3352 4.7166 -2.3852
10 6 4.8816 5.1964 -3.5623
11 6 5.5931 6.3789 -3.5682
12 9 6.1253 6.8434 -4.7199
13 6 5.7632 7.1011 -2.3690
14 6 6.4897 8.3130 -2.3655
15 1 6.5797 8.8913 -3.2731
16 6 7.0925 8.7638 -1.1860
17 7 7.3180 7.9273 -0.2054
18 14 7.5753 10.5599 -1.0114
19 1 6.3669 11.4125 -1.1453
20 1 8.1903 10.7796 0.3223
21 1 8.5520 10.9152 -2.0720
22 6 5.1999 6.6098 -1.1778
23 6 4.0593 2.5140 0.0025
24 6 5.5643 2.5920 0.0036
25 6 3.4314 1.2838 0.0015
26 6 4.2516 0.0195 0.0026
27 1 -0.3633 0.5137 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 0.2119 2.3179 -0.0014
31 1 1.3276 4.5111 -0.0008
32 1 3.9924 5.4465 0.8065
33 1 3.7803 3.7900 -2.3902
34 1 4.7507 4.6431 -4.4806
35 1 7.7355 8.2399 0.6124
36 1 5.3208 7.1572 -0.2547
37 1 5.9280 2.6113 -1.0237
38 1 5.8807 3.4995 0.5181
39 1 5.9729 1.7219 0.5175
40 1 4.4504 -0.2855 -1.0248
41 1 5.1954 0.1990 0.5174
42 1 3.7021 -0.7696 0.5160
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001215974434.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:24:37
Heat of formation + Delta-G solvation = -41.930545 kcal
Electronic energy + Delta-G solvation = -25760.348759 eV
Core-core repulsion = 22005.461968 eV
Total energy + Delta-G solvation = -3754.886791 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.138 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-47.05928 -40.34586 -38.48899 -37.08087 -34.62503 -33.47448 -32.97140 -30.35744
-29.70196 -28.00550 -27.60293 -25.97489 -25.87129 -25.26679 -21.76163 -21.19621
-20.70507 -19.94512 -17.55603 -17.44353 -16.60075 -16.44412 -15.89469 -15.79850
-15.57136 -14.91726 -14.38491 -14.11805 -13.85468 -13.82364 -13.78188 -13.03414
-12.95489 -12.80207 -12.52988 -12.43253 -12.22187 -11.96385 -11.79020 -11.67716
-11.54379 -11.43294 -11.41466 -11.20020 -11.03496 -10.75286 -10.62284 -10.50190
-10.14379 -9.45252 -9.33526 -8.85738 -8.43293 -7.81612 -7.54878 -6.87531
-6.27602 -4.41334 1.47348 1.55135 2.75082 2.93079 3.04721 3.08376
3.21181 3.26546 3.82162 3.90551 4.19199 4.56591 4.84305 4.89416
5.02069 5.05324 5.27214 5.30643 5.39437 5.52126 5.55117 5.65263
5.74699 5.94022 5.98549 6.05351 6.11055 6.12700 6.24111 6.29938
6.45869 6.57266 6.61768 6.79701 6.89263 6.96184 6.97556 7.15001
7.25025 7.41783 7.64021 7.70814 7.90417 8.03553 8.31102 8.56545
8.66892 8.76653 8.92217 10.11114
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.020851 B = 0.003348 C = 0.003214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1342.554859 B = 8360.952218 C = 8710.561623
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.318 6.318
3 C 0.115 3.885
4 C -0.204 4.204
5 C -0.092 4.092
6 C 0.140 3.860
7 N -0.710 5.710
8 C 0.213 3.787
9 C -0.267 4.267
10 C -0.092 4.092
11 C -0.061 4.061
12 F -0.168 7.168
13 C 0.118 3.882
14 C -0.455 4.455
15 H 0.082 0.918
16 C 0.080 3.920
17 N -0.784 5.784
18 Si 0.909 3.091
19 H -0.263 1.263
20 H -0.278 1.278
21 H -0.264 1.264
22 C -0.212 4.212
23 C -0.047 4.047
24 C -0.112 4.112
25 C -0.114 4.114
26 C -0.104 4.104
27 H 0.052 0.948
28 H 0.053 0.947
29 H 0.095 0.905
30 H 0.124 0.876
31 H 0.124 0.876
32 H 0.399 0.601
33 H 0.095 0.905
34 H 0.098 0.902
35 H 0.281 0.719
36 H 0.124 0.876
37 H 0.077 0.923
38 H 0.075 0.925
39 H 0.063 0.937
40 H 0.066 0.934
41 H 0.068 0.932
42 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.219 -11.488 5.276 15.646
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.231 6.231
3 C 0.070 3.930
4 C -0.224 4.224
5 C -0.112 4.112
6 C 0.047 3.953
7 N -0.341 5.341
8 C 0.116 3.884
9 C -0.289 4.289
10 C -0.112 4.112
11 C -0.082 4.082
12 F -0.147 7.147
13 C 0.114 3.886
14 C -0.484 4.484
15 H 0.100 0.900
16 C -0.139 4.139
17 N -0.409 5.409
18 Si 0.733 3.267
19 H -0.187 1.187
20 H -0.203 1.203
21 H -0.189 1.189
22 C -0.236 4.236
23 C -0.049 4.049
24 C -0.168 4.168
25 C -0.116 4.116
26 C -0.161 4.161
27 H 0.071 0.929
28 H 0.072 0.928
29 H 0.114 0.886
30 H 0.142 0.858
31 H 0.142 0.858
32 H 0.235 0.765
33 H 0.113 0.887
34 H 0.116 0.884
35 H 0.092 0.908
36 H 0.141 0.859
37 H 0.095 0.905
38 H 0.094 0.906
39 H 0.081 0.919
40 H 0.085 0.915
41 H 0.087 0.913
42 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -9.036 -11.804 5.396 15.815
hybrid contribution -0.057 1.220 0.199 1.238
sum -9.093 -10.584 5.595 15.034
Atomic orbital electron populations
1.22993 0.78968 1.03450 1.01244 1.86046 1.20820 1.27104 1.89161
1.18715 0.91624 0.83921 0.98711 1.20982 0.99505 0.91979 1.09917
1.21254 0.94233 0.97092 0.98602 1.17211 0.89978 0.85781 1.02356
1.41769 1.64286 1.17887 1.10120 1.17582 0.93072 0.93251 0.84512
1.19703 1.14356 1.03421 0.91451 1.20247 0.98660 0.95058 0.97204
1.17769 1.09815 0.97716 0.82867 1.91248 1.85949 1.89241 1.48300
1.17278 0.90145 0.91879 0.89251 1.19462 1.27840 1.04776 0.96355
0.90005 1.25880 0.93569 0.99493 0.94956 1.69846 1.30117 1.35634
1.05298 0.86354 0.79687 0.82479 0.78201 1.18727 1.20301 1.18873
1.20493 1.05843 0.97662 0.99563 1.20004 0.96704 0.91112 0.97104
1.20782 0.90279 1.02588 1.03175 1.18921 0.90339 0.95412 1.06889
1.20636 0.98992 0.94253 1.02184 0.92911 0.92795 0.88621 0.85794
0.85772 0.76494 0.88686 0.88370 0.90769 0.85864 0.90451 0.90645
0.91863 0.91539 0.91331 0.91624
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 9.81 101.05 0.99 1.23 16
2 O -0.32 -3.90 9.53 -19.70 -0.19 -4.09 16
3 C 0.11 1.60 6.66 -39.23 -0.26 1.33 16
4 C -0.20 -2.71 9.03 -39.46 -0.36 -3.07 16
5 C -0.09 -1.36 9.96 -39.39 -0.39 -1.76 16
6 C 0.14 2.33 4.49 -83.67 -0.38 1.95 16
7 N -0.71 -12.93 4.47 -8.41 -0.04 -12.96 16
8 C 0.21 4.66 6.18 -83.80 -0.52 4.14 16
9 C -0.27 -5.90 9.22 -39.10 -0.36 -6.26 16
10 C -0.09 -2.14 10.00 -39.62 -0.40 -2.54 16
11 C -0.06 -1.58 7.31 -38.61 -0.28 -1.86 16
12 F -0.17 -4.37 16.70 2.25 0.04 -4.33 16
13 C 0.12 3.17 5.57 -106.78 -0.59 2.57 16
14 C -0.46 -12.21 8.77 -37.79 -0.33 -12.54 16
15 H 0.08 2.19 7.74 -52.49 -0.41 1.78 16
16 C 0.08 1.98 5.10 -17.34 -0.09 1.89 16
17 N -0.78 -19.53 11.05 55.55 0.61 -18.92 16
18 Si 0.91 18.50 29.60 -169.99 -5.03 13.47 16
19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16
20 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16
21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16
22 C -0.21 -5.23 8.53 -38.70 -0.33 -5.56 16
23 C -0.05 -0.75 5.47 -104.44 -0.57 -1.32 16
24 C -0.11 -1.75 8.98 36.01 0.32 -1.42 16
25 C -0.11 -1.66 5.89 -104.50 -0.62 -2.28 16
26 C -0.10 -1.26 9.38 36.01 0.34 -0.92 16
27 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16
28 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16
29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
30 H 0.12 1.32 6.29 -52.49 -0.33 0.98 16
31 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16
32 H 0.40 6.75 8.83 -40.82 -0.36 6.39 16
33 H 0.10 2.01 6.75 -52.48 -0.35 1.65 16
34 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16
35 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16
36 H 0.12 3.09 6.22 -52.49 -0.33 2.76 16
37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16
38 H 0.07 1.29 7.46 -51.93 -0.39 0.90 16
39 H 0.06 0.82 5.94 -51.93 -0.31 0.51 16
40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
41 H 0.07 0.76 5.94 -51.93 -0.31 0.45 16
42 H 0.06 0.74 7.52 -51.93 -0.39 0.35 16
LS Contribution 349.90 15.07 5.27 5.27
Total: -1.00 -28.38 349.90 -8.37 -36.75
By element:
Atomic # 1 Polarization: 16.42 SS G_CDS: -5.22 Total: 11.21 kcal
Atomic # 6 Polarization: -22.58 SS G_CDS: -3.82 Total: -26.40 kcal
Atomic # 7 Polarization: -32.46 SS G_CDS: 0.58 Total: -31.88 kcal
Atomic # 8 Polarization: -3.90 SS G_CDS: -0.19 Total: -4.09 kcal
Atomic # 9 Polarization: -4.37 SS G_CDS: 0.04 Total: -4.33 kcal
Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -28.38 -8.37 -36.75 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001215974434.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.176 kcal
(2) G-P(sol) polarization free energy of solvation -28.383 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.559 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.931 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds