Wall clock time and date at job start Tue Mar 31 2020 11:24:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35988 * 117.00056 * 2 1
4 4 C 1.38737 * 119.97821 * 359.97438 * 3 2 1
5 5 C 1.38073 * 120.01933 * 179.97438 * 4 3 2
6 6 C 1.38905 * 119.98039 * 0.25616 * 5 4 3
7 7 N 1.39947 * 120.01858 * 179.70138 * 6 5 4
8 8 C 1.39790 * 120.00032 * 256.95440 * 7 6 5
9 9 C 1.39429 * 119.91635 * 4.58196 * 8 7 6
10 10 C 1.38351 * 120.46379 * 179.97438 * 9 8 7
11 11 C 1.38012 * 120.29162 * 0.02562 * 10 9 8
12 12 F 1.35106 * 120.09135 * 179.97438 * 11 10 9
13 13 C 1.41025 * 119.82407 * 359.97438 * 11 10 9
14 14 C 1.41292 * 120.22401 * 180.02562 * 13 11 10
15 15 H 1.08000 * 120.00578 * 24.27187 * 14 13 11
16 16 C 1.39917 * 119.99486 * 204.27820 * 14 13 11
17 17 N 1.30852 * 120.00162 * 19.30902 * 16 14 13
18 18 Si 1.86803 * 119.99592 * 199.31402 * 16 14 13
19 19 H 1.48497 * 109.47081 * 59.99780 * 18 16 14
20 20 H 1.48502 * 109.47049 * 179.97438 * 18 16 14
21 21 H 1.48501 * 109.46787 * 299.99476 * 18 16 14
22 22 C 1.38186 * 119.91557 * 184.30062 * 8 7 6
23 23 C 1.38862 * 119.95640 * 359.44556 * 6 5 4
24 24 C 1.50702 * 120.00958 * 180.25414 * 23 6 5
25 25 C 1.38113 * 119.98057 * 0.57596 * 23 6 5
26 26 C 1.50703 * 119.99060 * 179.72496 * 25 23 6
27 27 H 1.08994 * 109.47024 * 299.99551 * 1 2 3
28 28 H 1.09002 * 109.47121 * 60.00163 * 1 2 3
29 29 H 1.09005 * 109.46642 * 180.02562 * 1 2 3
30 30 H 1.08001 * 119.99345 * 359.97438 * 4 3 2
31 31 H 1.08007 * 120.00722 * 179.97438 * 5 4 3
32 32 H 0.96999 * 119.99689 * 76.96308 * 7 6 5
33 33 H 1.08006 * 119.76989 * 359.97438 * 9 8 7
34 34 H 1.08002 * 119.85924 * 180.02562 * 10 9 8
35 35 H 0.97000 * 120.00161 * 180.02562 * 17 16 14
36 36 H 1.08001 * 120.15044 * 0.02813 * 22 8 7
37 37 H 1.08996 * 109.47663 * 270.32353 * 24 23 6
38 38 H 1.09003 * 109.46979 * 30.32129 * 24 23 6
39 39 H 1.09001 * 109.47396 * 150.31409 * 24 23 6
40 40 H 1.08999 * 109.46780 * 269.97758 * 26 25 23
41 41 H 1.08997 * 109.47204 * 29.97479 * 26 25 23
42 42 H 1.08996 * 109.47156 * 149.97623 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2117 0.0000
4 6 1.2904 2.3749 -0.0005
5 6 1.9163 3.6056 0.0000
6 6 3.3034 3.6788 -0.0043
7 7 3.9387 4.9258 -0.0101
8 6 4.4960 5.4208 -1.1927
9 6 4.3352 4.7166 -2.3852
10 6 4.8816 5.1964 -3.5623
11 6 5.5931 6.3789 -3.5682
12 9 6.1253 6.8434 -4.7199
13 6 5.7632 7.1011 -2.3690
14 6 6.4897 8.3130 -2.3655
15 1 6.5797 8.8913 -3.2731
16 6 7.0925 8.7638 -1.1860
17 7 7.3180 7.9273 -0.2054
18 14 7.5753 10.5599 -1.0114
19 1 6.3669 11.4125 -1.1453
20 1 8.1903 10.7796 0.3223
21 1 8.5520 10.9152 -2.0720
22 6 5.1999 6.6098 -1.1778
23 6 4.0593 2.5140 0.0025
24 6 5.5643 2.5920 0.0036
25 6 3.4314 1.2838 0.0015
26 6 4.2516 0.0195 0.0026
27 1 -0.3633 0.5137 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 0.2119 2.3179 -0.0014
31 1 1.3276 4.5111 -0.0008
32 1 3.9924 5.4465 0.8065
33 1 3.7803 3.7900 -2.3902
34 1 4.7507 4.6431 -4.4806
35 1 7.7355 8.2399 0.6124
36 1 5.3208 7.1572 -0.2547
37 1 5.9280 2.6113 -1.0237
38 1 5.8807 3.4995 0.5181
39 1 5.9729 1.7219 0.5175
40 1 4.4504 -0.2855 -1.0248
41 1 5.1954 0.1990 0.5174
42 1 3.7021 -0.7696 0.5160
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001215974434.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:24:36
Heat of formation + Delta-G solvation = -55.357082 kcal
Electronic energy + Delta-G solvation = -25760.930978 eV
Core-core repulsion = 22005.461968 eV
Total energy + Delta-G solvation = -3755.469010 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.138 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-49.05066 -41.45279 -39.85891 -38.53085 -36.19845 -35.12502 -34.18276 -31.67433
-31.55182 -29.46781 -28.42409 -27.28940 -27.17300 -26.93096 -23.44841 -22.77353
-21.80467 -21.53125 -19.25272 -18.52717 -18.11352 -17.77583 -17.60072 -17.24183
-16.72348 -16.55237 -15.95028 -15.84522 -15.28926 -15.01953 -14.89289 -14.61978
-14.35735 -14.06905 -13.92543 -13.64186 -13.59961 -13.47242 -13.31144 -13.19165
-12.92206 -12.76596 -12.74434 -12.65102 -12.36240 -12.19945 -12.04625 -11.75400
-11.67273 -11.31402 -11.13752 -10.56283 -9.56283 -9.47426 -8.96158 -8.72361
-8.00085 -6.40078 0.35048 0.38515 0.94202 1.04486 1.38119 1.48559
1.54439 2.20545 2.39323 2.60897 2.71067 2.80349 3.61058 3.85488
3.89409 4.13065 4.17176 4.25327 4.32638 4.42874 4.44792 4.45396
4.62684 4.70205 4.73568 4.78326 4.83214 4.87595 4.94991 5.05288
5.05771 5.16182 5.17233 5.29463 5.35018 5.41933 5.49029 5.69248
5.74225 5.80243 5.87495 6.05758 6.11623 6.41715 6.49605 6.78146
6.82915 7.01284 7.11466 8.27711
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.020851 B = 0.003348 C = 0.003214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1342.554859 B = 8360.952218 C = 8710.561623
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.326 6.326
3 C 0.118 3.882
4 C -0.199 4.199
5 C -0.094 4.094
6 C 0.110 3.890
7 N -0.699 5.699
8 C 0.230 3.770
9 C -0.260 4.260
10 C -0.086 4.086
11 C -0.102 4.102
12 F -0.177 7.177
13 C 0.094 3.906
14 C -0.497 4.497
15 H 0.068 0.932
16 C 0.045 3.955
17 N -0.806 5.806
18 Si 0.980 3.020
19 H -0.260 1.260
20 H -0.260 1.260
21 H -0.264 1.264
22 C -0.230 4.230
23 C -0.058 4.058
24 C -0.107 4.107
25 C -0.124 4.124
26 C -0.102 4.102
27 H 0.064 0.936
28 H 0.061 0.939
29 H 0.120 0.880
30 H 0.154 0.846
31 H 0.131 0.869
32 H 0.403 0.597
33 H 0.111 0.889
34 H 0.121 0.879
35 H 0.292 0.708
36 H 0.114 0.886
37 H 0.060 0.940
38 H 0.053 0.947
39 H 0.088 0.912
40 H 0.069 0.931
41 H 0.076 0.924
42 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.814 -13.001 6.386 18.076
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.240 6.240
3 C 0.073 3.927
4 C -0.218 4.218
5 C -0.114 4.114
6 C 0.017 3.983
7 N -0.328 5.328
8 C 0.131 3.869
9 C -0.283 4.283
10 C -0.106 4.106
11 C -0.122 4.122
12 F -0.156 7.156
13 C 0.090 3.910
14 C -0.525 4.525
15 H 0.086 0.914
16 C -0.172 4.172
17 N -0.431 5.431
18 Si 0.800 3.200
19 H -0.185 1.185
20 H -0.184 1.184
21 H -0.189 1.189
22 C -0.255 4.255
23 C -0.060 4.060
24 C -0.163 4.163
25 C -0.125 4.125
26 C -0.158 4.158
27 H 0.083 0.917
28 H 0.079 0.921
29 H 0.138 0.862
30 H 0.171 0.829
31 H 0.149 0.851
32 H 0.240 0.760
33 H 0.129 0.871
34 H 0.139 0.861
35 H 0.102 0.898
36 H 0.132 0.868
37 H 0.079 0.921
38 H 0.072 0.928
39 H 0.106 0.894
40 H 0.088 0.912
41 H 0.094 0.906
42 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -10.662 -13.363 6.532 18.301
hybrid contribution 0.279 1.445 -0.083 1.474
sum -10.383 -11.918 6.449 17.071
Atomic orbital electron populations
1.23338 0.76690 1.05516 1.02132 1.86048 1.23134 1.26156 1.88681
1.18854 0.91648 0.84808 0.97427 1.21256 1.01007 0.91014 1.08485
1.21345 0.93453 0.98241 0.98380 1.17416 0.90858 0.84945 1.05096
1.41683 1.63436 1.18633 1.09027 1.17576 0.91433 0.92021 0.85892
1.19865 1.13764 1.03640 0.91033 1.20516 0.97385 0.94084 0.98609
1.18056 1.12176 0.99276 0.82742 1.91202 1.86328 1.89532 1.48553
1.17631 0.90654 0.92409 0.90332 1.19619 1.30033 1.05770 0.97108
0.91417 1.26644 0.92907 1.03698 0.93985 1.69866 1.30009 1.37430
1.05782 0.85293 0.79293 0.76653 0.78743 1.18462 1.18438 1.18891
1.20405 1.07364 0.99028 0.98663 1.20003 0.96500 0.91556 0.97915
1.20703 0.90762 1.02720 1.02109 1.19175 0.91250 0.95619 1.06474
1.20660 0.99136 0.93395 1.02628 0.91734 0.92083 0.86184 0.82878
0.85065 0.76005 0.87111 0.86060 0.89770 0.86817 0.92135 0.92759
0.89363 0.91194 0.90555 0.90765
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.22 9.81 113.37 1.11 1.33 16
2 O -0.33 -6.93 9.53 -93.41 -0.89 -7.82 16
3 C 0.12 2.94 6.66 22.50 0.15 3.09 16
4 C -0.20 -4.66 9.03 22.35 0.20 -4.45 16
5 C -0.09 -2.61 9.96 22.39 0.22 -2.39 16
6 C 0.11 3.52 4.49 38.15 0.17 3.69 16
7 N -0.70 -25.39 4.47 -180.51 -0.81 -26.19 16
8 C 0.23 10.20 6.18 38.15 0.24 10.44 16
9 C -0.26 -11.45 9.22 22.58 0.21 -11.24 16
10 C -0.09 -4.05 10.00 22.24 0.22 -3.83 16
11 C -0.10 -5.46 7.31 22.90 0.17 -5.29 16
12 F -0.18 -9.57 16.70 44.97 0.75 -8.82 16
13 C 0.09 5.22 5.57 -21.26 -0.12 5.10 16
14 C -0.50 -27.85 8.77 23.43 0.21 -27.64 16
15 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16
16 C 0.04 2.26 5.10 85.25 0.44 2.70 16
17 N -0.81 -40.99 11.05 21.82 0.24 -40.75 16
18 Si 0.98 38.38 29.60 68.60 2.03 40.41 16
19 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16
20 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16
21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16
22 C -0.23 -11.77 8.53 22.84 0.19 -11.57 16
23 C -0.06 -1.76 5.47 -19.74 -0.11 -1.87 16
24 C -0.11 -3.29 8.98 71.24 0.64 -2.65 16
25 C -0.12 -3.34 5.89 -19.78 -0.12 -3.45 16
26 C -0.10 -2.23 9.38 71.24 0.67 -1.56 16
27 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16
28 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16
29 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16
30 H 0.15 2.63 6.29 -2.91 -0.02 2.61 16
31 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16
32 H 0.40 13.76 8.83 -92.71 -0.82 12.95 16
33 H 0.11 4.53 6.75 -2.91 -0.02 4.51 16
34 H 0.12 5.00 8.06 -2.91 -0.02 4.97 16
35 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16
36 H 0.11 5.93 6.22 -2.91 -0.02 5.91 16
37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16
38 H 0.05 1.88 7.46 -2.39 -0.02 1.86 16
39 H 0.09 2.19 5.94 -2.39 -0.01 2.18 16
40 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16
41 H 0.08 1.52 5.94 -2.39 -0.01 1.51 16
42 H 0.07 1.49 7.52 -2.39 -0.02 1.47 16
Total: -1.00 -63.00 349.90 6.07 -56.94
By element:
Atomic # 1 Polarization: 35.59 SS G_CDS: 0.25 Total: 35.83 kcal
Atomic # 6 Polarization: -54.09 SS G_CDS: 4.49 Total: -49.60 kcal
Atomic # 7 Polarization: -66.38 SS G_CDS: -0.57 Total: -66.94 kcal
Atomic # 8 Polarization: -6.93 SS G_CDS: -0.89 Total: -7.82 kcal
Atomic # 9 Polarization: -9.57 SS G_CDS: 0.75 Total: -8.82 kcal
Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal
Total: -63.00 6.07 -56.94 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001215974434.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.578 kcal
(2) G-P(sol) polarization free energy of solvation -63.001 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.423 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.066 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.935 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.357 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds