Wall clock time and date at job start Tue Mar 31 2020 11:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38101 * 119.96393 * 2 1 4 4 C 1.38924 * 119.92476 * 180.29034 * 3 2 1 5 5 N 1.39707 * 120.07787 * 179.70235 * 4 3 2 6 6 C 1.39808 * 119.99607 * 331.58019 * 5 4 3 7 7 C 1.39428 * 119.91744 * 324.45839 * 6 5 4 8 8 C 1.38357 * 120.46033 * 179.76357 * 7 6 5 9 9 C 1.38013 * 120.29237 * 0.51255 * 8 7 6 10 10 F 1.35104 * 120.08564 * 179.72205 * 9 8 7 11 11 C 1.41013 * 119.82309 * 359.74396 * 9 8 7 12 12 C 1.41295 * 120.22507 * 180.02562 * 11 9 8 13 13 H 1.07993 * 119.99960 * 24.47003 * 12 11 9 14 14 C 1.39918 * 120.00084 * 204.46521 * 12 11 9 15 15 N 1.30858 * 119.99678 * 19.02569 * 14 12 11 16 16 Si 1.86796 * 120.00301 * 199.03038 * 14 12 11 17 17 H 1.48499 * 109.47207 * 59.99651 * 16 14 12 18 18 H 1.48494 * 109.47389 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46734 * 300.00031 * 16 14 12 20 20 C 1.38189 * 119.91278 * 144.73700 * 6 5 4 21 21 C 1.38930 * 119.84943 * 359.72373 * 4 3 2 22 22 C 1.38097 * 119.92476 * 359.97438 * 21 4 3 23 23 C 1.50695 * 119.96413 * 179.97438 * 22 21 4 24 24 C 1.38291 * 119.96454 * 179.74045 * 2 1 3 25 25 C 1.50697 * 119.91974 * 359.97438 * 24 2 1 26 26 O 1.42897 * 109.47497 * 269.72669 * 25 24 2 27 27 H 1.08994 * 109.47707 * 270.25805 * 1 2 3 28 28 H 1.09000 * 109.47110 * 30.26296 * 1 2 3 29 29 H 1.09005 * 109.46621 * 150.25445 * 1 2 3 30 30 H 1.07999 * 120.03725 * 0.02562 * 3 2 1 31 31 H 0.96992 * 120.00161 * 151.58204 * 5 4 3 32 32 H 1.07999 * 119.77093 * 359.97438 * 7 6 5 33 33 H 1.08009 * 119.85461 * 180.25900 * 8 7 6 34 34 H 0.97004 * 120.00088 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.14820 * 359.94997 * 20 6 5 36 36 H 1.08000 * 120.03760 * 179.97438 * 21 4 3 37 37 H 1.08996 * 109.47128 * 270.02056 * 23 22 21 38 38 H 1.09000 * 109.47219 * 30.02505 * 23 22 21 39 39 H 1.09005 * 109.46892 * 150.02029 * 23 22 21 40 40 H 1.08994 * 109.47516 * 29.73399 * 25 24 2 41 41 H 1.09010 * 109.46976 * 149.73001 * 25 24 2 42 42 H 0.96702 * 114.00655 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1967 1.1964 0.0000 4 6 3.5859 1.1955 -0.0061 5 7 4.2869 2.4040 -0.0124 6 6 3.7139 3.5413 -0.5892 7 6 2.9131 3.4173 -1.7238 8 6 2.3365 4.5348 -2.3009 9 6 2.5570 5.7873 -1.7648 10 9 1.9965 6.8763 -2.3351 11 6 3.3692 5.9274 -0.6207 12 6 3.6002 7.2056 -0.0645 13 1 2.8905 8.0026 -0.2297 14 6 4.7483 7.4386 0.7005 15 7 5.7736 6.6312 0.6043 16 14 4.8176 8.9023 1.8591 17 1 3.7325 8.7880 2.8664 18 1 6.1328 8.9264 2.5481 19 1 4.6428 10.1564 1.0832 20 6 3.9475 4.7863 -0.0367 21 6 4.2766 -0.0100 -0.0064 22 6 3.5806 -1.2027 0.0000 23 6 4.3289 -2.5108 -0.0009 24 6 2.1977 -1.1981 0.0054 25 6 1.4415 -2.5016 0.0119 26 8 1.2086 -2.9105 1.3612 27 1 -0.3634 0.0046 1.0276 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5099 30 1 1.6567 2.1317 0.0004 31 1 5.1710 2.4539 0.3833 32 1 2.7388 2.4418 -2.1532 33 1 1.7144 4.4270 -3.1772 34 1 6.5697 6.7929 1.1344 35 1 4.5709 4.8823 0.8400 36 1 5.3566 -0.0143 -0.0115 37 1 4.5043 -2.8283 -1.0287 38 1 5.2843 -2.3832 0.5081 39 1 3.7392 -3.2670 0.5174 40 1 0.4872 -2.3706 -0.4980 41 1 2.0269 -3.2637 -0.5028 42 1 0.7256 -3.7444 1.4417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216124195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:39 Heat of formation + Delta-G solvation = -61.484370 kcal Electronic energy + Delta-G solvation = -25423.277540 eV Core-core repulsion = 21667.542831 eV Total energy + Delta-G solvation = -3755.734709 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.20626 -39.90010 -38.01264 -36.59172 -34.99667 -33.60504 -33.38838 -30.86008 -29.86216 -27.94994 -27.56800 -26.52208 -25.32721 -24.60261 -21.63553 -21.08553 -20.48292 -19.72296 -17.54976 -17.48328 -16.74529 -16.10670 -15.97690 -15.61435 -15.27837 -14.92268 -14.42976 -14.00914 -13.95193 -13.55985 -13.42108 -13.11818 -13.01752 -12.77867 -12.71274 -12.65163 -12.42493 -12.21130 -11.91792 -11.73054 -11.58372 -11.51412 -11.18095 -10.97164 -10.86587 -10.77233 -10.63790 -10.27256 -9.98728 -9.69584 -9.50149 -9.26089 -8.29089 -7.87459 -7.68089 -6.99009 -6.43007 -4.51417 1.61812 1.68336 2.62180 2.75101 3.00337 3.03187 3.12046 3.83548 3.91305 3.97703 4.44528 4.56121 4.91053 4.93215 5.16831 5.24786 5.30533 5.38123 5.41637 5.56202 5.60669 5.65101 5.80731 5.88014 5.90777 5.97280 5.99449 6.04253 6.23478 6.35010 6.43221 6.65898 6.71328 6.82282 6.85597 6.95467 7.02936 7.13309 7.24689 7.49043 7.55051 7.61189 7.76674 7.88419 8.16112 8.33373 8.50100 8.64111 8.76121 10.00638 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.003271 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.832436 B = 8559.320605 C = 9192.303618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.029 4.029 3 C -0.173 4.173 4 C 0.224 3.776 5 N -0.685 5.685 6 C 0.170 3.830 7 C -0.244 4.244 8 C -0.101 4.101 9 C -0.045 4.045 10 F -0.164 7.164 11 C 0.107 3.893 12 C -0.452 4.452 13 H 0.084 0.916 14 C 0.078 3.922 15 N -0.785 5.785 16 Si 0.912 3.088 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.180 4.180 21 C -0.195 4.195 22 C -0.030 4.030 23 C -0.115 4.115 24 C -0.153 4.153 25 C 0.123 3.877 26 O -0.566 6.566 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.403 0.597 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.284 0.716 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 -15.700 0.759 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.030 4.030 3 C -0.194 4.194 4 C 0.123 3.877 5 N -0.307 5.307 6 C 0.075 3.925 7 C -0.266 4.266 8 C -0.120 4.120 9 C -0.066 4.066 10 F -0.144 7.144 11 C 0.103 3.897 12 C -0.481 4.481 13 H 0.103 0.897 14 C -0.141 4.141 15 N -0.409 5.409 16 Si 0.736 3.264 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.188 1.188 20 C -0.203 4.203 21 C -0.217 4.217 22 C -0.031 4.031 23 C -0.171 4.171 24 C -0.155 4.155 25 C 0.046 3.954 26 O -0.371 6.371 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.239 0.761 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.308 -15.048 0.875 15.432 hybrid contribution 0.251 0.428 0.351 0.608 sum -3.057 -14.621 1.226 14.987 Atomic orbital electron populations 1.20847 0.91621 1.02369 1.02367 1.19461 0.95489 0.91922 0.96127 1.20855 0.92655 0.98190 1.07743 1.17792 0.91305 0.85668 0.92971 1.42177 1.19519 1.06072 1.62950 1.17537 0.96776 0.85576 0.92567 1.19977 1.09697 0.97035 0.99888 1.20303 1.00814 0.91386 0.99520 1.17815 1.08359 0.82106 0.98285 1.91265 1.84427 1.54225 1.84447 1.17349 0.89739 0.93947 0.88713 1.19498 1.05319 0.96626 1.26617 0.89747 1.25923 0.94406 0.97983 0.95783 1.69821 1.02935 1.35670 1.32521 0.86286 0.78406 0.81280 0.80417 1.18585 1.20183 1.18757 1.20861 1.08041 0.89125 1.02238 1.20549 0.99280 0.90731 1.11185 1.19355 0.92705 0.94491 0.96561 1.20815 0.99847 0.94604 1.01859 1.18939 0.92638 0.93244 1.10652 1.20908 0.97702 0.93456 0.83359 1.86639 1.79617 1.43960 1.26895 0.91064 0.91434 0.91717 0.85191 0.76107 0.88150 0.87910 0.90533 0.85528 0.86341 0.91460 0.91709 0.91318 0.93032 0.93377 0.78259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.60 36.00 0.35 -1.08 16 2 C -0.03 -0.44 5.88 -104.66 -0.62 -1.06 16 3 C -0.17 -3.01 7.78 -39.38 -0.31 -3.32 16 4 C 0.22 3.93 5.94 -83.76 -0.50 3.43 16 5 N -0.69 -12.92 5.44 -8.44 -0.05 -12.97 16 6 C 0.17 3.74 5.74 -83.79 -0.48 3.26 16 7 C -0.24 -5.30 8.02 -39.09 -0.31 -5.61 16 8 C -0.10 -2.26 10.00 -39.62 -0.40 -2.66 16 9 C -0.05 -1.14 7.31 -38.61 -0.28 -1.42 16 10 F -0.16 -4.15 16.71 2.25 0.04 -4.11 16 11 C 0.11 2.80 5.57 -106.78 -0.60 2.21 16 12 C -0.45 -11.92 8.77 -37.79 -0.33 -12.25 16 13 H 0.08 2.21 7.74 -52.49 -0.41 1.80 16 14 C 0.08 1.91 5.11 -17.34 -0.09 1.82 16 15 N -0.79 -19.37 11.03 55.55 0.61 -18.76 16 16 Si 0.91 18.30 29.60 -169.99 -5.03 13.26 16 17 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 C -0.18 -4.44 8.60 -38.70 -0.33 -4.77 16 21 C -0.20 -3.00 9.60 -39.38 -0.38 -3.38 16 22 C -0.03 -0.43 5.88 -104.65 -0.62 -1.04 16 23 C -0.11 -1.23 9.19 36.00 0.33 -0.90 16 24 C -0.15 -2.17 5.51 -104.58 -0.58 -2.74 16 25 C 0.12 1.32 5.95 36.00 0.21 1.54 16 26 O -0.57 -6.18 13.63 -35.23 -0.48 -6.66 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.06 0.67 5.93 -51.93 -0.31 0.36 16 30 H 0.13 2.45 6.71 -52.49 -0.35 2.10 16 31 H 0.40 6.99 8.91 -40.82 -0.36 6.62 16 32 H 0.10 2.05 6.97 -52.49 -0.37 1.68 16 33 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 34 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 35 H 0.13 3.19 6.20 -52.49 -0.33 2.86 16 36 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.07 0.69 6.68 -51.93 -0.35 0.34 16 40 H 0.05 0.49 5.93 -51.93 -0.31 0.18 16 41 H 0.05 0.44 6.69 -51.92 -0.35 0.09 16 42 H 0.37 2.10 9.12 45.56 0.42 2.51 16 LS Contribution 349.92 15.07 5.27 5.27 Total: -1.00 -28.97 349.92 -8.93 -37.89 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -4.37 Total: 14.04 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -4.92 Total: -27.98 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.57 Total: -31.73 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.48 Total: -6.66 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.97 -8.93 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216124195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.591 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds