Wall clock time and date at job start Tue Mar 31 2020 11:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38101 * 119.96393 * 2 1 4 4 C 1.38924 * 119.92476 * 180.29034 * 3 2 1 5 5 N 1.39707 * 120.07787 * 179.70235 * 4 3 2 6 6 C 1.39808 * 119.99607 * 331.58019 * 5 4 3 7 7 C 1.39428 * 119.91744 * 324.45839 * 6 5 4 8 8 C 1.38357 * 120.46033 * 179.76357 * 7 6 5 9 9 C 1.38013 * 120.29237 * 0.51255 * 8 7 6 10 10 F 1.35104 * 120.08564 * 179.72205 * 9 8 7 11 11 C 1.41013 * 119.82309 * 359.74396 * 9 8 7 12 12 C 1.41295 * 120.22507 * 180.02562 * 11 9 8 13 13 H 1.07993 * 119.99960 * 24.47003 * 12 11 9 14 14 C 1.39918 * 120.00084 * 204.46521 * 12 11 9 15 15 N 1.30858 * 119.99678 * 19.02569 * 14 12 11 16 16 Si 1.86796 * 120.00301 * 199.03038 * 14 12 11 17 17 H 1.48499 * 109.47207 * 59.99651 * 16 14 12 18 18 H 1.48494 * 109.47389 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46734 * 300.00031 * 16 14 12 20 20 C 1.38189 * 119.91278 * 144.73700 * 6 5 4 21 21 C 1.38930 * 119.84943 * 359.72373 * 4 3 2 22 22 C 1.38097 * 119.92476 * 359.97438 * 21 4 3 23 23 C 1.50695 * 119.96413 * 179.97438 * 22 21 4 24 24 C 1.38291 * 119.96454 * 179.74045 * 2 1 3 25 25 C 1.50697 * 119.91974 * 359.97438 * 24 2 1 26 26 O 1.42897 * 109.47497 * 269.72669 * 25 24 2 27 27 H 1.08994 * 109.47707 * 270.25805 * 1 2 3 28 28 H 1.09000 * 109.47110 * 30.26296 * 1 2 3 29 29 H 1.09005 * 109.46621 * 150.25445 * 1 2 3 30 30 H 1.07999 * 120.03725 * 0.02562 * 3 2 1 31 31 H 0.96992 * 120.00161 * 151.58204 * 5 4 3 32 32 H 1.07999 * 119.77093 * 359.97438 * 7 6 5 33 33 H 1.08009 * 119.85461 * 180.25900 * 8 7 6 34 34 H 0.97004 * 120.00088 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.14820 * 359.94997 * 20 6 5 36 36 H 1.08000 * 120.03760 * 179.97438 * 21 4 3 37 37 H 1.08996 * 109.47128 * 270.02056 * 23 22 21 38 38 H 1.09000 * 109.47219 * 30.02505 * 23 22 21 39 39 H 1.09005 * 109.46892 * 150.02029 * 23 22 21 40 40 H 1.08994 * 109.47516 * 29.73399 * 25 24 2 41 41 H 1.09010 * 109.46976 * 149.73001 * 25 24 2 42 42 H 0.96702 * 114.00655 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1967 1.1964 0.0000 4 6 3.5859 1.1955 -0.0061 5 7 4.2869 2.4040 -0.0124 6 6 3.7139 3.5413 -0.5892 7 6 2.9131 3.4173 -1.7238 8 6 2.3365 4.5348 -2.3009 9 6 2.5570 5.7873 -1.7648 10 9 1.9965 6.8763 -2.3351 11 6 3.3692 5.9274 -0.6207 12 6 3.6002 7.2056 -0.0645 13 1 2.8905 8.0026 -0.2297 14 6 4.7483 7.4386 0.7005 15 7 5.7736 6.6312 0.6043 16 14 4.8176 8.9023 1.8591 17 1 3.7325 8.7880 2.8664 18 1 6.1328 8.9264 2.5481 19 1 4.6428 10.1564 1.0832 20 6 3.9475 4.7863 -0.0367 21 6 4.2766 -0.0100 -0.0064 22 6 3.5806 -1.2027 0.0000 23 6 4.3289 -2.5108 -0.0009 24 6 2.1977 -1.1981 0.0054 25 6 1.4415 -2.5016 0.0119 26 8 1.2086 -2.9105 1.3612 27 1 -0.3634 0.0046 1.0276 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5099 30 1 1.6567 2.1317 0.0004 31 1 5.1710 2.4539 0.3833 32 1 2.7388 2.4418 -2.1532 33 1 1.7144 4.4270 -3.1772 34 1 6.5697 6.7929 1.1344 35 1 4.5709 4.8823 0.8400 36 1 5.3566 -0.0143 -0.0115 37 1 4.5043 -2.8283 -1.0287 38 1 5.2843 -2.3832 0.5081 39 1 3.7392 -3.2670 0.5174 40 1 0.4872 -2.3706 -0.4980 41 1 2.0269 -3.2637 -0.5028 42 1 0.7256 -3.7444 1.4417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216124195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:38 Heat of formation + Delta-G solvation = -78.018140 kcal Electronic energy + Delta-G solvation = -25423.994498 eV Core-core repulsion = 21667.542831 eV Total energy + Delta-G solvation = -3756.451667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.15680 -41.13897 -39.57865 -37.68286 -36.42619 -35.32204 -34.47906 -32.18437 -31.73224 -29.28146 -28.74348 -27.77378 -27.09490 -25.70769 -23.42541 -22.63800 -21.66219 -21.16834 -19.30085 -18.27519 -18.20875 -17.93310 -17.43342 -17.08825 -16.51238 -16.43346 -16.11365 -15.94115 -15.05245 -14.87650 -14.52344 -14.43132 -14.38986 -14.01918 -13.98161 -13.83236 -13.77606 -13.55209 -13.38336 -13.26429 -13.14612 -12.80298 -12.64945 -12.60004 -12.33593 -12.10421 -11.91901 -11.71896 -11.46989 -11.18096 -10.90309 -10.74775 -9.58355 -9.44499 -9.41008 -8.80204 -8.03701 -6.47363 0.33770 0.49069 0.84588 0.95529 1.35204 1.45751 1.50078 2.16074 2.50243 2.57007 2.79449 3.48223 3.73394 3.88825 3.95910 4.04847 4.20025 4.25445 4.29799 4.40586 4.45974 4.57093 4.62590 4.64815 4.82638 4.85784 4.87726 4.89535 4.94904 4.96517 5.04480 5.10662 5.20378 5.26546 5.39884 5.53143 5.56743 5.66063 5.78834 5.81865 5.90437 5.98795 6.12173 6.34795 6.67980 6.72858 6.80708 6.93873 7.03902 8.19959 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.003271 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.832436 B = 8559.320605 C = 9192.303618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.037 4.037 3 C -0.193 4.193 4 C 0.198 3.802 5 N -0.686 5.686 6 C 0.185 3.815 7 C -0.237 4.237 8 C -0.093 4.093 9 C -0.081 4.081 10 F -0.171 7.171 11 C 0.082 3.918 12 C -0.493 4.493 13 H 0.072 0.928 14 C 0.043 3.957 15 N -0.808 5.808 16 Si 0.983 3.017 17 H -0.260 1.260 18 H -0.260 1.260 19 H -0.261 1.261 20 C -0.201 4.201 21 C -0.197 4.197 22 C -0.034 4.034 23 C -0.112 4.112 24 C -0.155 4.155 25 C 0.124 3.876 26 O -0.586 6.586 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.408 0.592 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.293 0.707 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.869 -18.623 1.015 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.038 4.038 3 C -0.215 4.215 4 C 0.099 3.901 5 N -0.310 5.310 6 C 0.089 3.911 7 C -0.259 4.259 8 C -0.113 4.113 9 C -0.102 4.102 10 F -0.151 7.151 11 C 0.078 3.922 12 C -0.522 4.522 13 H 0.091 0.909 14 C -0.175 4.175 15 N -0.433 5.433 16 Si 0.803 3.197 17 H -0.185 1.185 18 H -0.184 1.184 19 H -0.186 1.186 20 C -0.224 4.224 21 C -0.219 4.219 22 C -0.035 4.035 23 C -0.168 4.168 24 C -0.157 4.157 25 C 0.047 3.953 26 O -0.395 6.395 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.244 0.756 32 H 0.135 0.865 33 H 0.148 0.852 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.150 0.850 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -3.402 -18.046 1.129 18.398 hybrid contribution 0.231 1.056 0.256 1.111 sum -3.171 -16.990 1.385 17.338 Atomic orbital electron populations 1.20887 0.89827 1.03462 1.02827 1.19796 0.96972 0.91601 0.95455 1.20817 0.92793 0.98284 1.09621 1.17991 0.91496 0.85624 0.95009 1.42076 1.19802 1.05798 1.63295 1.17566 0.95548 0.85884 0.92080 1.20167 1.08881 0.97457 0.99352 1.20586 1.00325 0.90451 0.99903 1.18086 1.09966 0.82969 0.99172 1.91226 1.84620 1.54707 1.84526 1.17692 0.90463 0.94663 0.89381 1.19672 1.06525 0.96753 1.29200 0.90937 1.26711 0.93356 1.00862 0.96544 1.69843 1.03396 1.37054 1.32988 0.85241 0.78981 0.77469 0.78044 1.18467 1.18404 1.18567 1.20772 1.09147 0.89940 1.02540 1.20779 1.00121 0.90422 1.10544 1.19835 0.93162 0.95481 0.95039 1.20874 0.99885 0.92773 1.03279 1.19470 0.93164 0.94538 1.08510 1.20927 0.98413 0.92147 0.83782 1.86562 1.80308 1.45846 1.26765 0.90801 0.91798 0.89226 0.87594 0.75558 0.86457 0.85220 0.89571 0.86741 0.84977 0.89646 0.90940 0.90232 0.91472 0.91147 0.75475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.61 9.60 71.23 0.68 -1.93 16 2 C -0.04 -1.08 5.88 -19.89 -0.12 -1.20 16 3 C -0.19 -6.75 7.78 22.40 0.17 -6.58 16 4 C 0.20 6.90 5.94 38.22 0.23 7.13 16 5 N -0.69 -26.33 5.44 -180.62 -0.98 -27.31 16 6 C 0.19 8.39 5.74 38.14 0.22 8.61 16 7 C -0.24 -10.35 8.02 22.59 0.18 -10.17 16 8 C -0.09 -4.25 10.00 22.24 0.22 -4.03 16 9 C -0.08 -4.27 7.31 22.90 0.17 -4.11 16 10 F -0.17 -9.02 16.71 44.97 0.75 -8.27 16 11 C 0.08 4.53 5.57 -21.26 -0.12 4.41 16 12 C -0.49 -27.36 8.77 23.43 0.21 -27.15 16 13 H 0.07 4.03 7.74 -2.91 -0.02 4.01 16 14 C 0.04 2.13 5.11 85.24 0.44 2.57 16 15 N -0.81 -41.00 11.03 21.82 0.24 -40.76 16 16 Si 0.98 38.17 29.60 68.60 2.03 40.20 16 17 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 18 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 19 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 20 C -0.20 -10.38 8.60 22.84 0.20 -10.19 16 21 C -0.20 -5.77 9.60 22.40 0.22 -5.55 16 22 C -0.03 -0.88 5.88 -19.89 -0.12 -0.99 16 23 C -0.11 -1.96 9.19 71.23 0.65 -1.31 16 24 C -0.16 -3.98 5.51 -19.84 -0.11 -4.09 16 25 C 0.12 2.18 5.95 71.23 0.42 2.60 16 26 O -0.59 -10.57 13.63 -148.98 -2.03 -12.60 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 1.50 8.09 -2.39 -0.02 1.48 16 29 H 0.09 1.57 5.93 -2.38 -0.01 1.56 16 30 H 0.11 4.14 6.71 -2.91 -0.02 4.12 16 31 H 0.41 14.46 8.91 -92.71 -0.83 13.63 16 32 H 0.12 4.71 6.97 -2.91 -0.02 4.69 16 33 H 0.13 5.09 8.06 -2.91 -0.02 5.06 16 34 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 35 H 0.11 6.08 6.20 -2.91 -0.02 6.06 16 36 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 39 H 0.08 1.25 6.68 -2.38 -0.02 1.24 16 40 H 0.07 0.97 5.93 -2.39 -0.01 0.96 16 41 H 0.07 0.94 6.69 -2.38 -0.02 0.93 16 42 H 0.40 2.87 9.12 -74.06 -0.68 2.20 16 Total: -1.00 -65.14 349.92 3.14 -62.00 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: -0.42 Total: 38.71 kcal Atomic # 6 Polarization: -55.51 SS G_CDS: 3.54 Total: -51.97 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: -0.74 Total: -68.07 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -2.03 Total: -12.60 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.75 Total: -8.27 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -65.14 3.14 -62.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216124195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.020 kcal (2) G-P(sol) polarization free energy of solvation -65.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds