Wall clock time and date at job start Tue Mar 31 2020 11:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36000 * 116.99972 * 2 1 4 4 C 1.38506 * 120.08377 * 0.24703 * 3 2 1 5 5 C 1.38283 * 120.01849 * 180.25351 * 4 3 2 6 6 C 1.50701 * 119.90829 * 179.77204 * 5 4 3 7 7 C 1.38266 * 120.18460 * 359.50024 * 5 4 3 8 8 C 1.50704 * 119.91672 * 180.27435 * 7 5 4 9 9 C 1.38207 * 120.16649 * 0.24756 * 7 5 4 10 10 C 1.38755 * 119.97294 * 0.02562 * 9 7 5 11 11 N 1.39961 * 120.08864 * 180.02562 * 10 9 7 12 12 C 1.39786 * 120.00013 * 352.60732 * 11 10 9 13 13 C 1.39437 * 119.91658 * 137.49451 * 12 11 10 14 14 C 1.38351 * 120.46254 * 179.97438 * 13 12 11 15 15 C 1.38014 * 120.28934 * 359.97438 * 14 13 12 16 16 F 1.35110 * 120.08711 * 179.97438 * 15 14 13 17 17 C 1.41019 * 119.82701 * 0.02562 * 15 14 13 18 18 C 1.41293 * 120.22678 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00036 * 329.51567 * 18 17 15 20 20 C 1.39909 * 120.00566 * 149.51783 * 18 17 15 21 21 N 1.30858 * 119.99340 * 348.95673 * 20 18 17 22 22 Si 1.86793 * 120.00473 * 168.95706 * 20 18 17 23 23 H 1.48497 * 109.47295 * 60.00055 * 22 20 18 24 24 H 1.48503 * 109.47221 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47094 * 299.99894 * 22 20 18 26 26 C 1.38189 * 119.91303 * 317.21617 * 12 11 10 27 27 H 1.08993 * 109.47611 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47136 * 300.00820 * 1 2 3 29 29 H 1.09009 * 109.46986 * 59.99806 * 1 2 3 30 30 H 1.08001 * 119.99253 * 0.03223 * 4 3 2 31 31 H 1.08999 * 109.47285 * 269.72658 * 6 5 4 32 32 H 1.08997 * 109.47360 * 149.72496 * 6 5 4 33 33 H 1.09002 * 109.46784 * 29.72426 * 6 5 4 34 34 H 1.09001 * 109.46961 * 89.99611 * 8 7 5 35 35 H 1.09002 * 109.47244 * 209.99695 * 8 7 5 36 36 H 1.08995 * 109.47009 * 329.99804 * 8 7 5 37 37 H 1.07998 * 120.01106 * 179.97438 * 9 7 5 38 38 H 0.97000 * 120.00514 * 172.60715 * 11 10 9 39 39 H 1.08004 * 119.76966 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.85732 * 179.97438 * 14 13 12 41 41 H 0.97006 * 120.00180 * 180.02562 * 21 20 18 42 42 H 1.07994 * 120.15078 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2938 2.3745 0.0052 5 6 1.9229 3.6059 -0.0001 6 6 1.1015 4.8694 0.0003 7 6 3.3035 3.6812 -0.0002 8 6 3.9829 5.0264 0.0003 9 6 4.0621 2.5258 -0.0001 10 6 3.4378 1.2867 -0.0005 11 7 4.2036 0.1152 0.0002 12 6 5.5910 0.1870 -0.1546 13 6 6.4209 -0.6073 0.6357 14 6 7.7955 -0.5457 0.4917 15 6 8.3606 0.3038 -0.4377 16 9 9.7035 0.3611 -0.5746 17 6 7.5328 1.1126 -1.2434 18 6 8.1023 1.9848 -2.1980 19 1 9.0760 2.4174 -2.0211 20 6 7.4050 2.2884 -3.3723 21 7 6.3342 1.6074 -3.6918 22 14 8.0024 3.6655 -4.4840 23 1 9.3785 3.3619 -4.9523 24 1 7.0967 3.7847 -5.6548 25 1 8.0073 4.9443 -3.7291 26 6 6.1363 1.0408 -1.0944 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2152 2.3194 0.0097 31 1 0.9035 5.1744 -1.0272 32 1 1.6496 5.6589 0.5144 33 1 0.1573 4.6887 0.5141 34 1 4.1467 5.3503 1.0281 35 1 4.9411 4.9497 -0.5136 36 1 3.3523 5.7520 -0.5133 37 1 5.1403 2.5876 -0.0005 38 1 3.7716 -0.7467 0.1080 39 1 5.9876 -1.2754 1.3654 40 1 8.4291 -1.1650 1.1092 41 1 5.8508 1.8175 -4.5062 42 1 5.4930 1.6523 -1.7097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216377910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:42 Heat of formation + Delta-G solvation = -44.964201 kcal Electronic energy + Delta-G solvation = -26193.762604 eV Core-core repulsion = 22438.744264 eV Total energy + Delta-G solvation = -3755.018341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.21656 -40.13955 -38.10032 -37.34606 -35.11720 -33.61106 -31.48842 -31.11671 -29.79158 -28.22571 -27.35941 -26.69758 -25.39454 -24.57485 -21.90283 -21.47668 -20.50745 -19.94220 -17.69779 -17.43911 -16.61768 -16.07167 -15.74232 -15.55352 -15.09980 -14.94610 -14.36569 -14.04638 -13.88620 -13.84236 -13.76167 -13.50310 -12.97768 -12.76445 -12.54273 -12.31252 -12.18893 -11.85501 -11.83885 -11.70395 -11.59837 -11.53938 -11.19638 -11.08007 -10.90475 -10.66645 -10.61780 -10.40788 -10.11120 -9.85315 -9.47284 -9.23690 -8.04939 -7.58563 -7.49579 -6.80865 -6.28345 -4.49089 1.80020 1.84949 2.65106 2.73815 3.05136 3.08146 3.13014 3.49561 3.89859 4.07183 4.17475 4.51841 5.01007 5.16814 5.21173 5.22609 5.35889 5.39843 5.48908 5.51968 5.66738 5.75907 5.88533 5.91124 5.94375 6.00294 6.05944 6.14245 6.27433 6.35818 6.39983 6.57667 6.68037 6.86370 6.91214 7.02495 7.10125 7.14382 7.26999 7.45548 7.59194 7.72213 7.87317 7.93130 8.19243 8.35673 8.60591 8.71230 8.78338 10.13377 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.005196 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.747255 B = 5387.140814 C = 6727.399622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.323 6.323 3 C 0.045 3.955 4 C -0.164 4.164 5 C -0.118 4.118 6 C -0.103 4.103 7 C -0.074 4.074 8 C -0.112 4.112 9 C -0.147 4.147 10 C 0.199 3.801 11 N -0.676 5.676 12 C 0.158 3.842 13 C -0.238 4.238 14 C -0.107 4.107 15 C -0.036 4.036 16 F -0.163 7.163 17 C 0.101 3.899 18 C -0.454 4.454 19 H 0.082 0.918 20 C 0.076 3.924 21 N -0.790 5.790 22 Si 0.912 3.088 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.166 4.166 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.121 0.879 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.147 0.853 38 H 0.404 0.596 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.283 0.717 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.522 3.207 4.968 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.237 6.237 3 C -0.002 4.002 4 C -0.184 4.184 5 C -0.120 4.120 6 C -0.160 4.160 7 C -0.075 4.075 8 C -0.169 4.169 9 C -0.169 4.169 10 C 0.097 3.903 11 N -0.298 5.298 12 C 0.064 3.936 13 C -0.260 4.260 14 C -0.127 4.127 15 C -0.056 4.056 16 F -0.142 7.142 17 C 0.097 3.903 18 C -0.483 4.483 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.415 5.415 22 Si 0.736 3.264 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.187 4.187 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.165 0.835 38 H 0.239 0.761 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.446 3.036 4.744 12.757 hybrid contribution -0.059 0.102 -0.619 0.630 sum -11.505 3.137 4.125 12.618 Atomic orbital electron populations 1.22892 0.79242 1.03112 1.00811 1.85961 1.20588 1.26961 1.90225 1.18353 0.90194 0.84515 1.07148 1.20666 0.98764 0.91358 1.07597 1.19209 0.93128 0.94085 1.05550 1.20656 0.98611 0.95155 1.01536 1.19427 0.92460 0.95020 1.00559 1.20767 1.00700 0.93585 1.01808 1.20964 1.01362 0.89349 1.05266 1.17149 0.86641 0.87935 0.98594 1.41920 1.04221 1.05760 1.77858 1.17573 0.81152 0.99269 0.95577 1.20006 0.92152 1.08691 1.05143 1.20298 0.94624 0.99276 0.98474 1.17931 0.76533 1.04846 1.06299 1.91275 1.30943 1.96141 1.95880 1.17431 0.91118 0.90696 0.91017 1.19435 1.03981 1.23590 1.01338 0.89955 1.25872 0.94026 0.96034 0.98324 1.69781 1.14761 1.33956 1.23000 0.86292 0.79632 0.81410 0.79070 1.18882 1.20234 1.18620 1.21177 0.94890 1.04207 0.98474 0.88893 0.93258 0.93148 0.86149 0.91995 0.91712 0.92529 0.91642 0.91170 0.91852 0.83515 0.76079 0.88241 0.87792 0.90613 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.01 9.76 -19.74 -0.19 -5.21 16 3 C 0.05 0.78 6.70 -39.07 -0.26 0.52 16 4 C -0.16 -2.48 8.69 -39.47 -0.34 -2.82 16 5 C -0.12 -1.77 5.88 -104.59 -0.62 -2.39 16 6 C -0.10 -1.18 9.18 36.01 0.33 -0.85 16 7 C -0.07 -1.24 5.88 -104.62 -0.62 -1.86 16 8 C -0.11 -1.59 9.18 36.01 0.33 -1.26 16 9 C -0.15 -2.87 7.73 -39.40 -0.30 -3.18 16 10 C 0.20 3.87 6.44 -83.55 -0.54 3.33 16 11 N -0.68 -13.52 5.47 -8.32 -0.05 -13.56 16 12 C 0.16 3.56 5.84 -83.80 -0.49 3.07 16 13 C -0.24 -5.13 9.97 -39.09 -0.39 -5.52 16 14 C -0.11 -2.39 10.00 -39.62 -0.40 -2.79 16 15 C -0.04 -0.89 7.31 -38.61 -0.28 -1.18 16 16 F -0.16 -4.10 16.77 2.25 0.04 -4.06 16 17 C 0.10 2.66 5.53 -106.78 -0.59 2.07 16 18 C -0.45 -11.96 8.73 -37.80 -0.33 -12.29 16 19 H 0.08 2.14 7.79 -52.48 -0.41 1.73 16 20 C 0.08 1.88 5.24 -17.34 -0.09 1.79 16 21 N -0.79 -20.17 10.96 55.55 0.61 -19.56 16 22 Si 0.91 18.63 29.57 -169.99 -5.03 13.61 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 26 C -0.17 -4.11 5.97 -38.70 -0.23 -4.34 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 29 H 0.05 0.50 7.68 -51.92 -0.40 0.10 16 30 H 0.12 1.47 6.30 -52.49 -0.33 1.14 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.68 6.69 -51.93 -0.35 0.33 16 33 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.06 0.78 6.69 -51.93 -0.35 0.43 16 37 H 0.15 3.15 5.41 -52.49 -0.28 2.87 16 38 H 0.40 7.40 8.21 -40.82 -0.34 7.07 16 39 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 40 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 41 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 42 H 0.14 3.56 5.01 -52.49 -0.26 3.30 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -28.18 348.36 -8.39 -36.57 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -5.20 Total: 13.32 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -3.82 Total: -26.34 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.56 Total: -33.13 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.19 Total: -5.21 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.04 Total: -4.06 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.18 -8.39 -36.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216377910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.396 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds