Wall clock time and date at job start Tue Mar 31 2020 11:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38076 * 120.00271 * 2 1 4 4 C 1.38207 * 120.17769 * 179.74692 * 3 2 1 5 5 C 1.38831 * 120.18979 * 0.55020 * 4 3 2 6 6 O 1.35913 * 119.99716 * 179.72639 * 5 4 3 7 7 C 1.42899 * 116.99914 * 184.95109 * 6 5 4 8 8 C 1.52998 * 109.46661 * 156.35562 * 7 6 5 9 9 C 1.53002 * 109.47069 * 276.35020 * 7 6 5 10 10 C 1.38498 * 120.00975 * 359.44608 * 5 4 3 11 11 C 1.39282 * 119.82089 * 0.27919 * 10 5 4 12 12 C 1.48386 * 120.09215 * 179.97438 * 11 10 5 13 13 C 1.39007 * 120.42107 * 64.72211 * 12 11 10 14 14 C 1.40950 * 118.12677 * 179.76350 * 13 12 11 15 15 C 1.41377 * 120.57156 * 180.28164 * 14 13 12 16 16 H 1.07998 * 120.00220 * 205.69405 * 15 14 13 17 17 C 1.39898 * 120.00434 * 25.69616 * 15 14 13 18 18 N 1.30868 * 119.99361 * 15.57659 * 17 15 14 19 19 Si 1.86795 * 120.00552 * 195.58088 * 17 15 14 20 20 H 1.48495 * 109.47363 * 89.99361 * 19 17 15 21 21 H 1.48501 * 109.47491 * 210.00039 * 19 17 15 22 22 H 1.48509 * 109.47032 * 329.99509 * 19 17 15 23 23 C 1.40797 * 118.85744 * 0.52812 * 14 13 12 24 24 N 1.31509 * 120.69478 * 359.70468 * 23 14 13 25 25 C 1.32166 * 122.07401 * 0.02832 * 24 23 14 26 26 F 1.35103 * 119.45487 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.47169 * 269.97822 * 1 2 3 28 28 H 1.09003 * 109.47531 * 29.98029 * 1 2 3 29 29 H 1.08996 * 109.46856 * 149.98121 * 1 2 3 30 30 H 1.07996 * 119.90781 * 0.02562 * 3 2 1 31 31 H 1.08003 * 119.90601 * 180.29556 * 4 3 2 32 32 H 1.08998 * 109.47434 * 36.35658 * 7 6 5 33 33 H 1.09002 * 109.47584 * 59.99971 * 8 7 6 34 34 H 1.09001 * 109.47082 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47199 * 299.99709 * 8 7 6 36 36 H 1.08998 * 109.46989 * 179.97438 * 9 7 6 37 37 H 1.08998 * 109.47513 * 300.00590 * 9 7 6 38 38 H 1.09000 * 109.46773 * 60.00510 * 9 7 6 39 39 H 1.08004 * 120.09379 * 180.24915 * 10 5 4 40 40 H 1.07997 * 120.93422 * 359.97438 * 13 12 11 41 41 H 0.97005 * 119.99623 * 180.02562 * 18 17 15 42 42 H 1.07993 * 119.65474 * 179.73100 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1957 0.0000 4 6 3.5795 1.2000 0.0053 5 6 4.2813 0.0021 -0.0009 6 8 5.6404 0.0109 -0.0013 7 6 6.2972 -1.2528 -0.1177 8 6 7.7046 -1.0460 -0.6810 9 6 6.3912 -1.9077 1.2619 10 6 3.5967 -1.2018 -0.0008 11 6 2.2039 -1.2066 -0.0004 12 6 1.4643 -2.4930 -0.0009 13 6 1.5576 -3.3590 1.0826 14 6 0.8307 -4.5656 1.0333 15 6 0.8834 -5.4812 2.1092 16 1 0.6977 -6.5307 1.9348 17 6 1.1761 -5.0279 3.3999 18 7 1.1012 -3.7512 3.6776 19 14 1.6738 -6.2446 4.7269 20 1 3.1495 -6.4100 4.7186 21 1 1.2401 -5.7359 6.0530 22 1 1.0273 -7.5556 4.4642 23 6 0.0555 -4.8458 -0.1081 24 7 0.0039 -3.9954 -1.1099 25 6 0.6680 -2.8527 -1.0954 26 9 0.5766 -2.0177 -2.1536 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6560 2.1302 0.0004 31 1 4.1151 2.1378 0.0101 32 1 5.7288 -1.8975 -0.7880 33 1 8.2732 -0.4013 -0.0107 34 1 8.2056 -2.0099 -0.7702 35 1 7.6377 -0.5794 -1.6638 36 1 6.8918 -2.8719 1.1730 37 1 6.9597 -1.2631 1.9322 38 1 5.3885 -2.0551 1.6631 39 1 4.1413 -2.1345 -0.0016 40 1 2.1671 -3.1125 1.9394 41 1 1.3044 -3.4367 4.5725 42 1 -0.5031 -5.7685 -0.1613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222154002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:56 Heat of formation + Delta-G solvation = -47.310738 kcal Electronic energy + Delta-G solvation = -26288.476552 eV Core-core repulsion = 22533.356457 eV Total energy + Delta-G solvation = -3755.120094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -47.62539 -40.08469 -38.54060 -37.43083 -34.22006 -33.48462 -32.16732 -31.26684 -30.39847 -28.73749 -27.31847 -25.91007 -25.56219 -23.51526 -22.11673 -21.79468 -20.65913 -20.18060 -18.11837 -17.14075 -16.61602 -16.09987 -15.75259 -15.35016 -15.11570 -15.06838 -14.69215 -14.33335 -13.88357 -13.60387 -13.35540 -13.07951 -12.92085 -12.63685 -12.44069 -12.41631 -12.26908 -12.13877 -11.95182 -11.83268 -11.58456 -11.41541 -11.35454 -11.29609 -11.08345 -11.00009 -10.77856 -10.54663 -10.38771 -10.05710 -9.54839 -8.78604 -8.48851 -8.19653 -7.75284 -7.47559 -7.04736 -4.67451 1.60378 1.79538 2.32451 2.63521 2.92618 2.95831 2.98311 3.36072 3.71311 4.09839 4.32761 4.77882 4.89930 5.03129 5.07775 5.17074 5.19755 5.30440 5.39976 5.47701 5.54697 5.62051 5.68198 5.71413 5.77764 5.96931 6.03018 6.03734 6.09087 6.19064 6.22033 6.37577 6.46651 6.49156 6.64190 6.70569 6.75862 6.88115 6.90355 7.12891 7.14866 7.42135 7.58169 7.70320 7.73186 8.17056 8.43097 8.44859 9.17286 9.87212 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.005424 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.782019 B = 5161.057777 C = 6643.182497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.085 4.085 4 C -0.158 4.158 5 C 0.120 3.880 6 O -0.315 6.315 7 C 0.076 3.924 8 C -0.146 4.146 9 C -0.182 4.182 10 C -0.190 4.190 11 C 0.023 3.977 12 C -0.100 4.100 13 C -0.094 4.094 14 C 0.057 3.943 15 C -0.441 4.441 16 H 0.088 0.912 17 C 0.073 3.927 18 N -0.784 5.784 19 Si 0.915 3.085 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.259 1.259 23 C 0.010 3.990 24 N -0.489 5.489 25 C 0.166 3.834 26 F -0.144 7.144 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.129 0.871 40 H 0.137 0.863 41 H 0.287 0.713 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.138 5.364 -1.241 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.103 4.103 4 C -0.177 4.177 5 C 0.075 3.925 6 O -0.229 6.229 7 C 0.020 3.980 8 C -0.203 4.203 9 C -0.239 4.239 10 C -0.209 4.209 11 C 0.023 3.977 12 C -0.104 4.104 13 C -0.120 4.120 14 C 0.052 3.948 15 C -0.470 4.470 16 H 0.106 0.894 17 C -0.147 4.147 18 N -0.408 5.408 19 Si 0.739 3.261 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.152 4.152 24 N -0.201 5.201 25 C 0.012 3.988 26 F -0.123 7.123 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.146 0.854 40 H 0.155 0.845 41 H 0.098 0.902 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.790 5.544 -1.789 9.727 hybrid contribution 0.607 -0.368 1.290 1.472 sum 8.397 5.176 -0.500 9.877 Atomic orbital electron populations 1.20792 0.91185 1.02824 1.02098 1.19855 0.96275 0.91931 1.02108 1.20673 0.92858 0.97331 0.99474 1.20276 0.93567 0.95800 1.08066 1.18792 0.82027 0.93922 0.97719 1.86055 1.16337 1.32123 1.88428 1.22388 0.93829 0.84331 0.97480 1.21828 0.94217 1.02689 1.01536 1.22400 1.03652 1.00964 0.96911 1.21303 0.94299 0.96995 1.08307 1.18425 0.91737 0.92161 0.95415 1.19096 1.00666 0.94954 0.95698 1.21679 0.99815 0.94145 0.96337 1.18479 0.90002 0.92915 0.93415 1.19567 1.40507 0.95813 0.91156 0.89388 1.26009 0.92437 0.95960 1.00299 1.69777 1.32880 1.15282 1.22864 0.86175 0.79933 0.81039 0.78965 1.19050 1.20025 1.18248 1.22312 1.02665 0.98793 0.91386 1.66296 1.20669 1.02455 1.30641 1.17457 1.05243 0.90167 0.85942 1.91409 1.95739 1.69194 1.55992 0.91542 0.92311 0.90712 0.85707 0.85835 0.90845 0.91667 0.90661 0.91811 0.91120 0.91684 0.91287 0.85370 0.84529 0.90194 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 9.49 36.00 0.34 -1.67 16 2 C -0.10 -1.90 5.75 -104.27 -0.60 -2.50 16 3 C -0.09 -1.36 9.68 -39.65 -0.38 -1.75 16 4 C -0.16 -2.50 9.98 -39.37 -0.39 -2.90 16 5 C 0.12 2.04 6.58 -39.27 -0.26 1.78 16 6 O -0.31 -4.87 9.81 -19.47 -0.19 -5.06 16 7 C 0.08 0.99 2.85 -26.73 -0.08 0.91 16 8 C -0.15 -1.45 9.56 37.16 0.36 -1.10 16 9 C -0.18 -2.28 9.14 37.16 0.34 -1.94 16 10 C -0.19 -3.56 7.87 -39.10 -0.31 -3.86 16 11 C 0.02 0.48 5.02 -104.92 -0.53 -0.04 16 12 C -0.10 -2.31 4.62 -104.75 -0.48 -2.79 16 13 C -0.09 -2.28 8.48 -38.27 -0.32 -2.61 16 14 C 0.06 1.39 5.57 -106.71 -0.59 0.79 16 15 C -0.44 -10.46 9.08 -37.77 -0.34 -10.80 16 16 H 0.09 1.96 7.89 -52.49 -0.41 1.55 16 17 C 0.07 1.64 5.20 -17.34 -0.09 1.55 16 18 N -0.78 -18.49 10.94 55.54 0.61 -17.88 16 19 Si 0.92 16.94 29.59 -169.99 -5.03 11.91 16 20 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 21 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 22 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 23 C 0.01 0.23 10.96 -16.72 -0.18 0.05 16 24 N -0.49 -12.03 10.34 -12.59 -0.13 -12.16 16 25 C 0.17 3.98 6.92 -16.73 -0.12 3.87 16 26 F -0.14 -3.34 15.55 2.25 0.04 -3.30 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 29 H 0.07 1.52 4.75 -51.93 -0.25 1.27 16 30 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 32 H 0.07 1.00 6.38 -51.93 -0.33 0.67 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.01 6.77 -51.93 -0.35 0.66 16 39 H 0.13 2.31 5.38 -52.48 -0.28 2.03 16 40 H 0.14 3.38 6.27 -52.49 -0.33 3.05 16 41 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 42 H 0.14 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -26.80 351.16 -8.37 -35.17 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.31 Total: 9.05 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -3.64 Total: -23.01 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.48 Total: -30.04 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.19 Total: -5.06 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.04 Total: -3.30 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -26.80 -8.37 -35.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222154002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.139 kcal (2) G-P(sol) polarization free energy of solvation -26.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds