Wall clock time and date at job start Tue Mar 31 2020 11:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38076 * 120.00271 * 2 1 4 4 C 1.38207 * 120.17769 * 179.74692 * 3 2 1 5 5 C 1.38831 * 120.18979 * 0.55020 * 4 3 2 6 6 O 1.35913 * 119.99716 * 179.72639 * 5 4 3 7 7 C 1.42899 * 116.99914 * 184.95109 * 6 5 4 8 8 C 1.52998 * 109.46661 * 156.35562 * 7 6 5 9 9 C 1.53002 * 109.47069 * 276.35020 * 7 6 5 10 10 C 1.38498 * 120.00975 * 359.44608 * 5 4 3 11 11 C 1.39282 * 119.82089 * 0.27919 * 10 5 4 12 12 C 1.48386 * 120.09215 * 179.97438 * 11 10 5 13 13 C 1.39007 * 120.42107 * 64.72211 * 12 11 10 14 14 C 1.40950 * 118.12677 * 179.76350 * 13 12 11 15 15 C 1.41377 * 120.57156 * 180.28164 * 14 13 12 16 16 H 1.07998 * 120.00220 * 205.69405 * 15 14 13 17 17 C 1.39898 * 120.00434 * 25.69616 * 15 14 13 18 18 N 1.30868 * 119.99361 * 15.57659 * 17 15 14 19 19 Si 1.86795 * 120.00552 * 195.58088 * 17 15 14 20 20 H 1.48495 * 109.47363 * 89.99361 * 19 17 15 21 21 H 1.48501 * 109.47491 * 210.00039 * 19 17 15 22 22 H 1.48509 * 109.47032 * 329.99509 * 19 17 15 23 23 C 1.40797 * 118.85744 * 0.52812 * 14 13 12 24 24 N 1.31509 * 120.69478 * 359.70468 * 23 14 13 25 25 C 1.32166 * 122.07401 * 0.02832 * 24 23 14 26 26 F 1.35103 * 119.45487 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.47169 * 269.97822 * 1 2 3 28 28 H 1.09003 * 109.47531 * 29.98029 * 1 2 3 29 29 H 1.08996 * 109.46856 * 149.98121 * 1 2 3 30 30 H 1.07996 * 119.90781 * 0.02562 * 3 2 1 31 31 H 1.08003 * 119.90601 * 180.29556 * 4 3 2 32 32 H 1.08998 * 109.47434 * 36.35658 * 7 6 5 33 33 H 1.09002 * 109.47584 * 59.99971 * 8 7 6 34 34 H 1.09001 * 109.47082 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47199 * 299.99709 * 8 7 6 36 36 H 1.08998 * 109.46989 * 179.97438 * 9 7 6 37 37 H 1.08998 * 109.47513 * 300.00590 * 9 7 6 38 38 H 1.09000 * 109.46773 * 60.00510 * 9 7 6 39 39 H 1.08004 * 120.09379 * 180.24915 * 10 5 4 40 40 H 1.07997 * 120.93422 * 359.97438 * 13 12 11 41 41 H 0.97005 * 119.99623 * 180.02562 * 18 17 15 42 42 H 1.07993 * 119.65474 * 179.73100 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1957 0.0000 4 6 3.5795 1.2000 0.0053 5 6 4.2813 0.0021 -0.0009 6 8 5.6404 0.0109 -0.0013 7 6 6.2972 -1.2528 -0.1177 8 6 7.7046 -1.0460 -0.6810 9 6 6.3912 -1.9077 1.2619 10 6 3.5967 -1.2018 -0.0008 11 6 2.2039 -1.2066 -0.0004 12 6 1.4643 -2.4930 -0.0009 13 6 1.5576 -3.3590 1.0826 14 6 0.8307 -4.5656 1.0333 15 6 0.8834 -5.4812 2.1092 16 1 0.6977 -6.5307 1.9348 17 6 1.1761 -5.0279 3.3999 18 7 1.1012 -3.7512 3.6776 19 14 1.6738 -6.2446 4.7269 20 1 3.1495 -6.4100 4.7186 21 1 1.2401 -5.7359 6.0530 22 1 1.0273 -7.5556 4.4642 23 6 0.0555 -4.8458 -0.1081 24 7 0.0039 -3.9954 -1.1099 25 6 0.6680 -2.8527 -1.0954 26 9 0.5766 -2.0177 -2.1536 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6560 2.1302 0.0004 31 1 4.1151 2.1378 0.0101 32 1 5.7288 -1.8975 -0.7880 33 1 8.2732 -0.4013 -0.0107 34 1 8.2056 -2.0099 -0.7702 35 1 7.6377 -0.5794 -1.6638 36 1 6.8918 -2.8719 1.1730 37 1 6.9597 -1.2631 1.9322 38 1 5.3885 -2.0551 1.6631 39 1 4.1413 -2.1345 -0.0016 40 1 2.1671 -3.1125 1.9394 41 1 1.3044 -3.4367 4.5725 42 1 -0.5031 -5.7685 -0.1613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222154002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:55 Heat of formation + Delta-G solvation = -59.273879 kcal Electronic energy + Delta-G solvation = -26288.995312 eV Core-core repulsion = 22533.356457 eV Total energy + Delta-G solvation = -3755.638855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.47130 -41.39214 -40.22058 -38.82205 -36.01824 -34.69569 -33.62901 -32.60298 -32.20492 -30.29759 -28.27635 -27.41217 -27.23502 -25.03665 -23.68715 -23.39771 -22.07890 -21.47186 -19.61343 -18.74660 -18.43636 -17.82025 -17.18564 -16.86306 -16.61270 -16.41059 -16.23076 -15.72538 -15.19060 -15.06717 -14.78490 -14.46150 -14.27708 -14.15281 -13.98558 -13.82850 -13.66442 -13.56429 -13.38659 -13.12946 -13.08868 -12.90033 -12.82017 -12.60006 -12.43012 -12.41729 -12.14681 -11.90990 -11.58082 -11.54970 -11.26809 -10.42431 -10.34393 -9.82089 -9.45252 -8.92522 -8.79679 -6.53044 0.10896 0.43422 0.61153 0.81294 1.39727 1.47554 1.53754 2.14986 2.22054 2.54126 2.73862 3.23373 3.43466 3.62795 3.80777 3.87756 3.94883 4.04092 4.12844 4.18103 4.25193 4.37675 4.52015 4.60631 4.65422 4.73992 4.74363 4.75649 4.84067 4.87749 4.90477 4.91070 5.08660 5.12525 5.13225 5.17251 5.22311 5.35785 5.38383 5.55299 5.70456 5.73059 5.82672 5.90610 6.33453 6.45296 6.59119 6.63126 7.29695 8.14780 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.005424 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.782019 B = 5161.057777 C = 6643.182497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.119 4.119 3 C -0.075 4.075 4 C -0.152 4.152 5 C 0.118 3.882 6 O -0.316 6.316 7 C 0.068 3.932 8 C -0.139 4.139 9 C -0.178 4.178 10 C -0.200 4.200 11 C -0.012 4.012 12 C -0.087 4.087 13 C -0.113 4.113 14 C 0.038 3.962 15 C -0.460 4.460 16 H 0.098 0.902 17 C 0.036 3.964 18 N -0.810 5.810 19 Si 0.988 3.012 20 H -0.261 1.261 21 H -0.269 1.269 22 H -0.251 1.251 23 C -0.003 4.003 24 N -0.502 5.502 25 C 0.145 3.855 26 F -0.143 7.143 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.295 0.705 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.619 6.301 -0.361 11.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.171 4.171 5 C 0.073 3.927 6 O -0.231 6.231 7 C 0.012 3.988 8 C -0.196 4.196 9 C -0.236 4.236 10 C -0.219 4.219 11 C -0.013 4.013 12 C -0.090 4.090 13 C -0.139 4.139 14 C 0.034 3.966 15 C -0.489 4.489 16 H 0.116 0.884 17 C -0.181 4.181 18 N -0.434 5.434 19 Si 0.808 3.192 20 H -0.186 1.186 21 H -0.194 1.194 22 H -0.174 1.174 23 C -0.164 4.164 24 N -0.214 5.214 25 C -0.008 4.008 26 F -0.123 7.123 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.181 0.819 31 H 0.173 0.827 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.106 0.894 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.271 6.492 -0.932 11.356 hybrid contribution 0.192 -0.604 1.030 1.209 sum 9.463 5.888 0.098 11.146 Atomic orbital electron populations 1.20750 0.91048 1.02850 1.01838 1.20065 0.96663 0.92356 1.02873 1.21052 0.93107 0.97629 0.97483 1.20714 0.93723 0.96516 1.06100 1.18959 0.82823 0.93761 0.97142 1.86062 1.15393 1.33477 1.88149 1.22652 0.95155 0.83409 0.97614 1.21838 0.92107 1.04137 1.01528 1.22375 1.02239 1.02183 0.96770 1.21276 0.93722 0.97815 1.09061 1.18511 0.92559 0.91816 0.98385 1.19239 0.99574 0.95692 0.94532 1.21605 1.00676 0.94979 0.96607 1.18793 0.90275 0.93441 0.94127 1.19913 1.40978 0.96211 0.91750 0.88385 1.26889 0.91531 0.97611 1.02102 1.69836 1.32623 1.17100 1.23886 0.85086 0.79566 0.78679 0.75887 1.18564 1.19390 1.17431 1.22592 1.03167 0.99453 0.91234 1.66272 1.21099 1.02927 1.31106 1.17617 1.06281 0.90393 0.86553 1.91387 1.95825 1.69159 1.55909 0.91920 0.89133 0.93757 0.81910 0.82664 0.92056 0.90821 0.88619 0.91579 0.89329 0.90729 0.94153 0.86006 0.85695 0.89406 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.87 9.49 71.23 0.68 -3.20 16 2 C -0.12 -4.43 5.75 -19.64 -0.11 -4.54 16 3 C -0.08 -2.21 9.68 22.22 0.22 -2.00 16 4 C -0.15 -4.43 9.98 22.40 0.22 -4.20 16 5 C 0.12 3.92 6.58 22.47 0.15 4.07 16 6 O -0.32 -9.38 9.81 -92.57 -0.91 -10.29 16 7 C 0.07 1.70 2.85 30.59 0.09 1.79 16 8 C -0.14 -2.48 9.56 71.98 0.69 -1.79 16 9 C -0.18 -4.38 9.14 71.98 0.66 -3.72 16 10 C -0.20 -7.66 7.87 22.58 0.18 -7.48 16 11 C -0.01 -0.50 5.02 -20.06 -0.10 -0.60 16 12 C -0.09 -4.18 4.62 -19.95 -0.09 -4.27 16 13 C -0.11 -5.74 8.48 23.12 0.20 -5.54 16 14 C 0.04 1.95 5.57 -21.22 -0.12 1.83 16 15 C -0.46 -22.14 9.08 23.44 0.21 -21.93 16 16 H 0.10 4.38 7.89 -2.91 -0.02 4.36 16 17 C 0.04 1.64 5.20 85.24 0.44 2.09 16 18 N -0.81 -38.79 10.94 21.82 0.24 -38.55 16 19 Si 0.99 34.01 29.59 68.60 2.03 36.04 16 20 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 21 H -0.27 -8.97 7.11 99.48 0.71 -8.26 16 22 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16 23 C 0.00 -0.15 10.96 85.37 0.94 0.79 16 24 N -0.50 -25.62 10.34 -193.73 -2.00 -27.62 16 25 C 0.14 7.24 6.92 85.08 0.59 7.83 16 26 F -0.14 -6.88 15.55 44.97 0.70 -6.18 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.09 2.56 8.09 -2.39 -0.02 2.54 16 29 H 0.04 1.85 4.75 -2.39 -0.01 1.84 16 30 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.06 1.69 6.38 -2.39 -0.02 1.67 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.04 1.21 6.77 -2.39 -0.02 1.20 16 39 H 0.12 4.66 5.38 -2.91 -0.02 4.64 16 40 H 0.13 6.53 6.27 -2.91 -0.02 6.51 16 41 H 0.29 12.77 8.30 -92.70 -0.77 12.00 16 42 H 0.16 6.84 8.06 -2.91 -0.02 6.81 16 Total: -1.00 -59.51 351.16 5.93 -53.59 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 1.05 Total: 33.90 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 4.83 Total: -40.89 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -1.76 Total: -66.17 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.91 Total: -10.29 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.70 Total: -6.18 kcal Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.04 kcal Total: -59.51 5.93 -53.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222154002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.689 kcal (2) G-P(sol) polarization free energy of solvation -59.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds