Wall clock time and date at job start Tue Mar 31 2020 10:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00453 * 2 1 4 4 H 1.48497 * 109.46995 * 264.98893 * 3 2 1 5 5 H 1.48497 * 109.47222 * 144.98567 * 3 2 1 6 6 H 1.48502 * 109.46692 * 24.98929 * 3 2 1 7 7 C 1.38811 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99742 * 189.06454 * 7 2 1 9 9 N 1.36941 * 120.00604 * 9.07328 * 7 2 1 10 10 C 1.47428 * 125.64344 * 10.43256 * 9 7 2 11 11 C 1.55124 * 104.71992 * 155.82203 * 10 9 7 12 12 C 1.55150 * 101.48860 * 37.29733 * 11 10 9 13 13 H 1.09001 * 110.87462 * 82.76149 * 12 11 10 14 14 O 1.42898 * 110.72643 * 205.96901 * 12 11 10 15 15 C 1.42898 * 114.00445 * 204.97717 * 14 12 11 16 16 C 1.50696 * 109.47213 * 179.97438 * 15 14 12 17 17 C 1.38126 * 119.97193 * 114.99722 * 16 15 14 18 18 C 1.39965 * 118.92543 * 179.97438 * 17 16 15 19 19 O 1.22084 * 120.52309 * 179.97438 * 18 17 16 20 20 N 1.35031 * 118.95749 * 0.02562 * 18 17 16 21 21 C 1.36181 * 119.65393 * 179.97438 * 20 18 17 22 22 C 1.35195 * 120.73791 * 179.97438 * 21 20 18 23 23 C 1.40195 * 120.15700 * 0.03596 * 22 21 20 24 24 C 1.36274 * 119.56037 * 359.97438 * 23 22 21 25 25 C 1.36705 * 119.87308 * 0.02562 * 20 18 17 26 26 N 1.32380 * 119.97242 * 294.72490 * 16 15 14 27 27 C 1.47018 * 125.65333 * 190.74952 * 9 7 2 28 28 H 0.96997 * 119.99379 * 0.02562 * 1 2 3 29 29 H 1.08991 * 110.36854 * 274.75573 * 10 9 7 30 30 H 1.08999 * 110.36513 * 37.07596 * 10 9 7 31 31 H 1.09006 * 111.19065 * 279.19363 * 11 10 9 32 32 H 1.09000 * 110.90904 * 155.27861 * 11 10 9 33 33 H 1.08997 * 109.46847 * 299.99698 * 15 14 12 34 34 H 1.08992 * 109.46926 * 59.99780 * 15 14 12 35 35 H 1.08000 * 120.53638 * 0.02562 * 17 16 15 36 36 H 1.08000 * 119.63369 * 0.02562 * 21 20 18 37 37 H 1.08004 * 119.91957 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.21657 * 179.97438 * 23 22 21 39 39 H 1.08005 * 120.27641 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.87991 * 300.44004 * 27 9 7 41 41 H 1.09003 * 109.88107 * 61.44368 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9852 -1.3947 5 1 3.4909 1.4730 0.8033 6 1 1.3988 2.6809 0.5915 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1479 9 7 1.3383 -2.3808 -0.1859 10 6 -0.0676 -2.5105 -0.6104 11 6 -0.1555 -3.9170 -1.2586 12 6 0.7879 -4.7394 -0.3417 13 1 0.2664 -5.0678 0.5574 14 8 1.3297 -5.8581 -1.0467 15 6 1.7228 -6.9421 -0.2028 16 6 2.2761 -8.0610 -1.0471 17 6 3.6047 -8.4207 -0.9314 18 6 4.0954 -9.4633 -1.7259 19 8 5.2649 -9.8049 -1.6476 20 7 3.2552 -10.0848 -2.5810 21 6 3.7178 -11.1007 -3.3611 22 6 2.8957 -11.7384 -4.2244 23 6 1.5502 -11.3580 -4.3271 24 6 1.0776 -10.3424 -3.5510 25 6 1.9486 -9.6905 -2.6590 26 7 1.4872 -8.7018 -1.8952 27 6 1.8975 -3.7263 0.0102 28 1 -0.4849 0.8401 -0.0004 29 1 -0.7316 -2.4452 0.2515 30 1 -0.3159 -1.7404 -1.3407 31 1 0.2125 -3.9017 -2.2846 32 1 -1.1745 -4.3018 -1.2165 33 1 2.4875 -6.6006 0.4948 34 1 0.8574 -7.3014 0.3540 35 1 4.2541 -7.9064 -0.2386 36 1 4.7527 -11.4009 -3.2888 37 1 3.2766 -12.5421 -4.8371 38 1 0.8928 -11.8665 -5.0167 39 1 0.0432 -10.0397 -3.6210 40 1 2.7542 -3.8712 -0.6480 41 1 2.2027 -3.8530 1.0489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224262273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:28 Heat of formation + Delta-G solvation = 34.312667 kcal Electronic energy + Delta-G solvation = -25157.959562 eV Core-core repulsion = 21426.298886 eV Total energy + Delta-G solvation = -3731.660676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.93712 -38.77615 -38.54669 -37.62692 -35.77378 -34.34631 -32.55878 -31.91942 -30.10368 -29.24091 -27.86714 -26.80894 -25.38554 -24.31340 -23.88807 -22.78032 -20.28843 -20.12798 -19.31456 -18.96951 -17.80526 -16.96601 -16.86139 -16.42848 -16.01406 -15.82662 -15.17312 -14.81369 -14.71366 -14.57395 -14.24769 -13.72145 -13.68207 -13.45877 -12.85476 -12.67529 -12.50921 -12.35713 -12.12916 -11.70088 -11.49550 -11.14737 -11.08864 -10.85878 -10.74266 -10.60984 -10.39209 -10.15353 -10.06630 -9.85002 -9.72633 -9.64806 -9.14167 -8.56895 -8.03306 -6.78022 -5.72592 -3.05573 -0.22532 0.12000 1.64043 1.80487 2.28224 3.34696 3.42709 3.47597 3.49126 3.55215 3.84738 3.99800 4.11103 4.22833 4.46813 4.52221 4.64826 4.91652 5.02836 5.13537 5.27542 5.34394 5.40858 5.47932 5.51072 5.52255 5.54211 5.59953 5.73127 5.75703 5.86303 6.05706 6.22253 6.34048 6.52985 6.59874 6.63455 6.74118 7.41541 7.47544 7.51087 7.56762 7.61798 7.80577 8.28189 9.21474 9.82992 10.50309 11.40651 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025863 B = 0.002494 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.365527 B =11224.301842 C =11765.975209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.601 5.601 10 C 0.174 3.826 11 C -0.137 4.137 12 C 0.077 3.923 13 H 0.067 0.933 14 O -0.364 6.364 15 C 0.109 3.891 16 C 0.220 3.780 17 C -0.316 4.316 18 C 0.510 3.490 19 O -0.536 6.536 20 N -0.430 5.430 21 C 0.098 3.902 22 C -0.170 4.170 23 C -0.039 4.039 24 C -0.130 4.130 25 C 0.387 3.613 26 N -0.520 5.520 27 C 0.115 3.885 28 H 0.253 0.747 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.161 0.839 36 H 0.180 0.820 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.168 0.832 40 H 0.033 0.967 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 -26.878 -7.912 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.049 3.951 11 C -0.175 4.175 12 C 0.019 3.981 13 H 0.085 0.915 14 O -0.282 6.282 15 C 0.032 3.968 16 C 0.092 3.908 17 C -0.341 4.341 18 C 0.316 3.684 19 O -0.416 6.416 20 N -0.133 5.133 21 C -0.025 4.025 22 C -0.191 4.191 23 C -0.063 4.063 24 C -0.150 4.150 25 C 0.144 3.856 26 N -0.244 5.244 27 C -0.011 4.011 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.179 0.821 36 H 0.197 0.803 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.185 0.815 40 H 0.051 0.949 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.577 -26.433 -7.870 27.585 hybrid contribution 1.285 0.682 0.406 1.510 sum 1.863 -25.751 -7.464 26.875 Atomic orbital electron populations 1.69942 1.04968 1.25263 1.56525 1.24834 0.95665 0.97830 1.02094 0.86130 0.78609 0.83269 0.77721 1.21494 1.20685 1.21689 1.19028 0.91079 0.82670 1.42855 0.90621 1.44367 1.09535 0.99651 1.79260 1.21472 0.85846 0.90742 0.97066 1.23160 0.97154 0.97720 0.99512 1.23284 0.94714 0.85021 0.95074 0.91481 1.88008 1.82371 1.25007 1.32830 1.21242 0.99458 0.85136 0.91002 1.21267 0.89442 0.91215 0.88922 1.22668 0.97138 1.04660 1.09684 1.17168 0.86023 0.84269 0.80932 1.90987 1.15218 1.66736 1.68613 1.44464 1.11530 1.26622 1.30716 1.22340 1.01871 0.87657 0.90665 1.21035 0.93940 1.03036 1.01062 1.21552 0.95363 0.93758 0.95657 1.21045 1.00927 0.97022 0.95994 1.20666 0.80396 0.90936 0.93601 1.68804 1.34714 1.09488 1.11400 1.21748 0.95179 0.86653 0.97564 0.93653 0.95268 0.90893 0.91145 0.91707 0.90813 0.90909 0.82107 0.80274 0.82455 0.82982 0.81473 0.94874 0.96022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.30 10.68 55.49 0.59 -26.71 16 2 C -0.01 -0.22 5.40 -17.43 -0.09 -0.32 16 3 Si 0.91 22.44 29.56 -169.99 -5.03 17.41 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.23 -6.54 10.24 -15.06 -0.15 -6.70 16 8 H 0.08 2.11 7.84 -52.48 -0.41 1.70 16 9 N -0.60 -15.92 3.39 -169.94 -0.58 -16.50 16 10 C 0.17 4.28 5.43 -2.41 -0.01 4.27 16 11 C -0.14 -2.71 6.82 -24.47 -0.17 -2.87 16 12 C 0.08 1.42 3.40 -24.90 -0.08 1.34 16 13 H 0.07 1.13 7.88 -51.93 -0.41 0.72 16 14 O -0.36 -6.35 10.05 -35.23 -0.35 -6.70 16 15 C 0.11 1.51 6.20 36.00 0.22 1.73 16 16 C 0.22 3.06 6.43 -82.40 -0.53 2.53 16 17 C -0.32 -4.35 9.69 -38.98 -0.38 -4.73 16 18 C 0.51 7.13 7.36 -15.50 -0.11 7.01 16 19 O -0.54 -8.64 16.69 4.84 0.08 -8.56 16 20 N -0.43 -4.75 2.76 -65.37 -0.18 -4.93 16 21 C 0.10 0.73 10.08 -16.70 -0.17 0.56 16 22 C -0.17 -0.71 9.99 -39.93 -0.40 -1.11 16 23 C -0.04 -0.16 10.07 -39.55 -0.40 -0.55 16 24 C -0.13 -0.89 9.96 -39.36 -0.39 -1.29 16 25 C 0.39 4.22 7.33 -155.95 -1.14 3.08 16 26 N -0.52 -6.96 10.25 -8.56 -0.09 -7.04 16 27 C 0.11 2.53 7.02 -3.07 -0.02 2.50 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 30 H 0.07 1.98 6.95 -51.93 -0.36 1.62 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 34 H 0.07 0.89 8.11 -51.93 -0.42 0.46 16 35 H 0.16 2.05 7.97 -52.49 -0.42 1.63 16 36 H 0.18 1.19 7.34 -52.49 -0.39 0.80 16 37 H 0.16 0.14 8.06 -52.48 -0.42 -0.28 16 38 H 0.15 0.09 8.06 -52.49 -0.42 -0.34 16 39 H 0.17 0.91 8.06 -52.48 -0.42 0.48 16 40 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -35.97 347.15 -9.48 -45.45 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.33 Total: -3.11 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -3.83 Total: 5.46 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.25 Total: -55.18 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.27 Total: -15.26 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.97 -9.48 -45.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224262273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.761 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds