Wall clock time and date at job start Tue Mar 31 2020 10:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00453 * 2 1 4 4 H 1.48497 * 109.46995 * 264.98893 * 3 2 1 5 5 H 1.48497 * 109.47222 * 144.98567 * 3 2 1 6 6 H 1.48502 * 109.46692 * 24.98929 * 3 2 1 7 7 C 1.38811 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99742 * 189.06454 * 7 2 1 9 9 N 1.36941 * 120.00604 * 9.07328 * 7 2 1 10 10 C 1.47428 * 125.64344 * 10.43256 * 9 7 2 11 11 C 1.55124 * 104.71992 * 155.82203 * 10 9 7 12 12 C 1.55150 * 101.48860 * 37.29733 * 11 10 9 13 13 H 1.09001 * 110.87462 * 82.76149 * 12 11 10 14 14 O 1.42898 * 110.72643 * 205.96901 * 12 11 10 15 15 C 1.42898 * 114.00445 * 204.97717 * 14 12 11 16 16 C 1.50696 * 109.47213 * 179.97438 * 15 14 12 17 17 C 1.38126 * 119.97193 * 114.99722 * 16 15 14 18 18 C 1.39965 * 118.92543 * 179.97438 * 17 16 15 19 19 O 1.22084 * 120.52309 * 179.97438 * 18 17 16 20 20 N 1.35031 * 118.95749 * 0.02562 * 18 17 16 21 21 C 1.36181 * 119.65393 * 179.97438 * 20 18 17 22 22 C 1.35195 * 120.73791 * 179.97438 * 21 20 18 23 23 C 1.40195 * 120.15700 * 0.03596 * 22 21 20 24 24 C 1.36274 * 119.56037 * 359.97438 * 23 22 21 25 25 C 1.36705 * 119.87308 * 0.02562 * 20 18 17 26 26 N 1.32380 * 119.97242 * 294.72490 * 16 15 14 27 27 C 1.47018 * 125.65333 * 190.74952 * 9 7 2 28 28 H 0.96997 * 119.99379 * 0.02562 * 1 2 3 29 29 H 1.08991 * 110.36854 * 274.75573 * 10 9 7 30 30 H 1.08999 * 110.36513 * 37.07596 * 10 9 7 31 31 H 1.09006 * 111.19065 * 279.19363 * 11 10 9 32 32 H 1.09000 * 110.90904 * 155.27861 * 11 10 9 33 33 H 1.08997 * 109.46847 * 299.99698 * 15 14 12 34 34 H 1.08992 * 109.46926 * 59.99780 * 15 14 12 35 35 H 1.08000 * 120.53638 * 0.02562 * 17 16 15 36 36 H 1.08000 * 119.63369 * 0.02562 * 21 20 18 37 37 H 1.08004 * 119.91957 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.21657 * 179.97438 * 23 22 21 39 39 H 1.08005 * 120.27641 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.87991 * 300.44004 * 27 9 7 41 41 H 1.09003 * 109.88107 * 61.44368 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9852 -1.3947 5 1 3.4909 1.4730 0.8033 6 1 1.3988 2.6809 0.5915 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1479 9 7 1.3383 -2.3808 -0.1859 10 6 -0.0676 -2.5105 -0.6104 11 6 -0.1555 -3.9170 -1.2586 12 6 0.7879 -4.7394 -0.3417 13 1 0.2664 -5.0678 0.5574 14 8 1.3297 -5.8581 -1.0467 15 6 1.7228 -6.9421 -0.2028 16 6 2.2761 -8.0610 -1.0471 17 6 3.6047 -8.4207 -0.9314 18 6 4.0954 -9.4633 -1.7259 19 8 5.2649 -9.8049 -1.6476 20 7 3.2552 -10.0848 -2.5810 21 6 3.7178 -11.1007 -3.3611 22 6 2.8957 -11.7384 -4.2244 23 6 1.5502 -11.3580 -4.3271 24 6 1.0776 -10.3424 -3.5510 25 6 1.9486 -9.6905 -2.6590 26 7 1.4872 -8.7018 -1.8952 27 6 1.8975 -3.7263 0.0102 28 1 -0.4849 0.8401 -0.0004 29 1 -0.7316 -2.4452 0.2515 30 1 -0.3159 -1.7404 -1.3407 31 1 0.2125 -3.9017 -2.2846 32 1 -1.1745 -4.3018 -1.2165 33 1 2.4875 -6.6006 0.4948 34 1 0.8574 -7.3014 0.3540 35 1 4.2541 -7.9064 -0.2386 36 1 4.7527 -11.4009 -3.2888 37 1 3.2766 -12.5421 -4.8371 38 1 0.8928 -11.8665 -5.0167 39 1 0.0432 -10.0397 -3.6210 40 1 2.7542 -3.8712 -0.6480 41 1 2.2027 -3.8530 1.0489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224262273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:28 Heat of formation + Delta-G solvation = 10.684312 kcal Electronic energy + Delta-G solvation = -25158.984165 eV Core-core repulsion = 21426.298886 eV Total energy + Delta-G solvation = -3732.685278 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.74338 -40.07990 -39.47231 -38.75497 -37.31034 -35.08020 -34.25609 -33.07354 -31.10990 -30.86471 -29.23761 -28.30193 -26.26928 -26.07909 -24.59854 -23.73092 -22.13361 -21.80484 -20.09126 -19.83938 -18.95555 -18.53338 -17.95498 -17.62623 -16.81033 -16.70534 -16.51502 -16.37690 -15.89243 -15.70001 -15.36568 -15.09371 -14.96763 -14.64998 -14.29822 -13.83611 -13.63130 -13.43760 -13.38203 -13.02456 -12.90889 -12.87817 -12.66627 -12.41071 -12.15275 -12.01253 -11.81182 -11.68173 -11.58388 -11.43179 -11.13133 -10.71467 -10.64520 -10.47965 -8.88928 -8.86764 -7.90181 -5.25847 -0.93734 -0.57190 0.77733 1.03722 1.45285 1.48117 1.56085 1.63171 2.39120 2.50104 2.75985 2.86969 3.20035 3.29789 3.43313 3.68467 3.70405 3.79221 3.86517 4.03154 4.05637 4.12303 4.19826 4.29096 4.40562 4.44445 4.57809 4.64792 4.77063 4.84914 4.92036 4.98484 4.99310 5.00666 5.05362 5.08822 5.34007 5.42314 5.51063 5.57521 5.68788 6.16406 6.22878 6.46133 6.62617 7.06120 7.72557 8.38968 9.21792 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025863 B = 0.002494 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.365527 B =11224.301842 C =11765.975209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.271 1.271 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.624 5.624 10 C 0.179 3.821 11 C -0.122 4.122 12 C 0.095 3.905 13 H 0.092 0.908 14 O -0.376 6.376 15 C 0.105 3.895 16 C 0.224 3.776 17 C -0.351 4.351 18 C 0.500 3.500 19 O -0.575 6.575 20 N -0.429 5.429 21 C 0.061 3.939 22 C -0.133 4.133 23 C -0.005 4.005 24 C -0.145 4.145 25 C 0.372 3.628 26 N -0.549 5.549 27 C 0.111 3.889 28 H 0.251 0.749 29 H 0.010 0.990 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.181 0.819 37 H 0.204 0.796 38 H 0.204 0.796 39 H 0.183 0.817 40 H 0.024 0.976 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -29.772 -9.896 31.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.255 4.255 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.195 1.195 6 H -0.216 1.216 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.352 5.352 10 C 0.054 3.946 11 C -0.161 4.161 12 C 0.037 3.963 13 H 0.110 0.890 14 O -0.294 6.294 15 C 0.028 3.972 16 C 0.091 3.909 17 C -0.377 4.377 18 C 0.308 3.692 19 O -0.459 6.459 20 N -0.130 5.130 21 C -0.062 4.062 22 C -0.152 4.152 23 C -0.029 4.029 24 C -0.165 4.165 25 C 0.132 3.868 26 N -0.274 5.274 27 C -0.015 4.015 28 H 0.060 0.940 29 H 0.028 0.972 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.174 0.826 36 H 0.198 0.802 37 H 0.221 0.779 38 H 0.221 0.779 39 H 0.201 0.799 40 H 0.042 0.958 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.349 -29.401 -9.897 31.024 hybrid contribution 1.516 1.314 0.817 2.166 sum 1.167 -28.087 -9.080 29.541 Atomic orbital electron populations 1.70127 1.06285 1.25744 1.57297 1.25680 0.96616 1.01078 1.02097 0.85084 0.77608 0.78851 0.77708 1.21165 1.19548 1.21607 1.19376 0.91478 0.84109 1.42829 0.90681 1.44677 1.10304 1.00727 1.79472 1.21271 0.84852 0.92795 0.95674 1.22973 0.99411 0.94918 0.98777 1.23015 0.93040 0.84730 0.95559 0.88979 1.87972 1.82408 1.25306 1.33726 1.21451 1.00575 0.84205 0.90939 1.21221 0.89337 0.91188 0.89114 1.22601 0.97536 1.06208 1.11358 1.17182 0.85890 0.84559 0.81531 1.90936 1.16559 1.68147 1.70210 1.44351 1.11335 1.26952 1.30379 1.22805 1.03135 0.88101 0.92118 1.21714 0.93432 1.01765 0.98326 1.22216 0.95576 0.91290 0.93794 1.21415 1.01189 0.97942 0.95955 1.21302 0.80700 0.90831 0.93934 1.68767 1.35124 1.11055 1.12502 1.21904 0.96130 0.85801 0.97666 0.94016 0.97151 0.94317 0.91801 0.88487 0.89911 0.88860 0.82564 0.80187 0.77857 0.77895 0.79946 0.95833 0.95368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.64 10.68 21.65 0.23 -57.41 16 2 C -0.06 -3.56 5.40 84.86 0.46 -3.11 16 3 Si 0.98 46.82 29.56 68.60 2.03 48.85 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 7 C -0.25 -14.61 10.24 84.03 0.86 -13.75 16 8 H 0.08 4.28 7.84 -2.91 -0.02 4.25 16 9 N -0.62 -33.85 3.39 -691.56 -2.35 -36.20 16 10 C 0.18 9.04 5.43 86.93 0.47 9.51 16 11 C -0.12 -4.77 6.82 32.06 0.22 -4.55 16 12 C 0.09 3.43 3.40 31.78 0.11 3.53 16 13 H 0.09 2.91 7.88 -2.39 -0.02 2.89 16 14 O -0.38 -12.86 10.05 -148.98 -1.50 -14.36 16 15 C 0.11 2.87 6.20 71.23 0.44 3.31 16 16 C 0.22 6.35 6.43 42.45 0.27 6.63 16 17 C -0.35 -10.37 9.69 22.66 0.22 -10.15 16 18 C 0.50 14.83 7.36 84.62 0.62 15.45 16 19 O -0.57 -19.83 16.69 -5.59 -0.09 -19.92 16 20 N -0.43 -9.39 2.76 -478.64 -1.32 -10.71 16 21 C 0.06 0.80 10.08 83.32 0.84 1.64 16 22 C -0.13 -0.43 9.99 22.04 0.22 -0.21 16 23 C -0.01 -0.01 10.07 22.29 0.22 0.21 16 24 C -0.14 -1.50 9.96 22.41 0.22 -1.28 16 25 C 0.37 7.73 7.33 133.98 0.98 8.71 16 26 N -0.55 -14.57 10.25 -181.01 -1.86 -16.43 16 27 C 0.11 4.91 7.02 86.73 0.61 5.52 16 28 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.01 0.56 8.07 -2.39 -0.02 0.54 16 30 H 0.04 2.18 6.95 -2.39 -0.02 2.17 16 31 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.08 2.07 7.90 -2.39 -0.02 2.06 16 34 H 0.09 2.14 8.11 -2.39 -0.02 2.12 16 35 H 0.16 4.44 7.97 -2.91 -0.02 4.42 16 36 H 0.18 2.27 7.34 -2.91 -0.02 2.25 16 37 H 0.20 -1.09 8.06 -2.91 -0.02 -1.11 16 38 H 0.20 -1.45 8.06 -2.91 -0.02 -1.47 16 39 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.02 1.09 8.06 -2.39 -0.02 1.07 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -83.69 347.15 2.96 -80.73 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.04 Total: 3.99 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 6.77 Total: 21.47 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -5.29 Total: -120.75 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.59 Total: -34.28 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -83.69 2.96 -80.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224262273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.413 kcal (2) G-P(sol) polarization free energy of solvation -83.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds