Wall clock time and date at job start Tue Mar 31 2020 10:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86805 * 119.99983 * 2 1 4 4 H 1.48499 * 109.47139 * 269.99949 * 3 2 1 5 5 H 1.48496 * 109.46868 * 30.00104 * 3 2 1 6 6 H 1.48501 * 109.46997 * 149.99894 * 3 2 1 7 7 C 1.38634 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00148 * 0.02562 * 7 2 1 9 9 O 1.34926 * 119.99914 * 179.97438 * 7 2 1 10 10 C 1.42904 * 116.99911 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46857 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.84829 * 305.85319 * 11 10 9 13 13 O 1.43443 * 109.80529 * 66.72676 * 11 10 9 14 14 C 1.42913 * 114.66893 * 171.14027 * 13 11 10 15 15 C 1.53610 * 109.88295 * 287.56307 * 14 13 11 16 16 C 1.50958 * 107.51313 * 48.35312 * 15 14 13 17 17 C 1.34197 * 129.51292 * 164.49742 * 16 15 14 18 18 N 1.35318 * 107.56761 * 180.28032 * 17 16 15 19 19 C 1.46499 * 125.99129 * 179.84125 * 18 17 16 20 20 C 1.50701 * 109.46992 * 124.71683 * 19 18 17 21 21 C 1.38643 * 120.79007 * 269.71785 * 20 19 18 22 22 C 1.38202 * 119.16151 * 179.75662 * 21 20 19 23 23 N 1.31868 * 120.76342 * 0.53017 * 22 21 20 24 24 C 1.31872 * 121.72934 * 359.74281 * 23 22 21 25 25 C 1.38206 * 120.75773 * 359.97431 * 24 23 22 26 26 N 1.40414 * 108.01259 * 359.57886 * 18 17 16 27 27 C 1.29805 * 108.10742 * 0.20964 * 26 18 17 28 28 H 0.97004 * 119.99819 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47183 * 60.00132 * 10 9 7 30 30 H 1.09004 * 109.46956 * 300.00001 * 10 9 7 31 31 H 1.09000 * 109.40332 * 167.43766 * 14 13 11 32 32 H 1.09001 * 109.33377 * 47.64383 * 14 13 11 33 33 H 1.09004 * 109.85141 * 288.84667 * 15 14 13 34 34 H 1.09004 * 109.91000 * 167.88567 * 15 14 13 35 35 H 1.07996 * 126.21688 * 0.13903 * 17 16 15 36 36 H 1.09002 * 109.47391 * 4.71674 * 19 18 17 37 37 H 1.09001 * 109.46813 * 244.71730 * 19 18 17 38 38 H 1.08003 * 120.42289 * 0.02562 * 21 20 19 39 39 H 1.08003 * 119.61987 * 180.24924 * 22 21 20 40 40 H 1.07991 * 119.62083 * 180.02562 * 24 23 22 41 41 H 1.08002 * 120.41178 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4974 2.0465 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5474 1.4402 0.7001 7 6 2.0090 -1.2006 -0.0005 8 1 1.4690 -2.1359 -0.0014 9 8 3.3582 -1.2006 -0.0011 10 6 4.0070 -2.4739 -0.0010 11 6 5.5238 -2.2734 -0.0010 12 1 5.8120 -1.6296 -0.8320 13 8 5.9357 -1.6810 1.2387 14 6 7.3505 -1.6289 1.4339 15 6 7.8904 -3.0380 1.7217 16 6 7.3157 -3.9663 0.6793 17 6 7.6953 -5.2077 0.3391 18 7 6.8772 -5.6274 -0.6537 19 6 6.9374 -6.9268 -1.3275 20 6 5.5957 -7.6061 -1.2294 21 6 5.3008 -8.4445 -0.1653 22 6 4.0580 -9.0461 -0.1063 23 7 3.1626 -8.8385 -1.0519 24 6 3.4104 -8.0521 -2.0811 25 6 4.6291 -7.4120 -2.2043 26 7 5.9566 -4.6012 -0.9206 27 6 6.2163 -3.6092 -0.1248 28 1 -0.4850 0.8401 -0.0004 29 1 3.7138 -3.0311 -0.8907 30 1 3.7144 -3.0307 0.8892 31 1 7.5760 -0.9756 2.2768 32 1 7.8247 -1.2363 0.5344 33 1 7.5776 -3.3583 2.7156 34 1 8.9786 -3.0386 1.6583 35 1 8.5078 -5.7689 0.7764 36 1 7.6952 -7.5486 -0.8507 37 1 7.1949 -6.7805 -2.3765 38 1 6.0314 -8.6217 0.6101 39 1 3.8189 -9.6973 0.7214 40 1 2.6520 -7.9059 -2.8359 41 1 4.8262 -6.7695 -3.0497 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224379460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:52 Heat of formation + Delta-G solvation = 47.527473 kcal Electronic energy + Delta-G solvation = -25689.216862 eV Core-core repulsion = 21958.129223 eV Total energy + Delta-G solvation = -3731.087639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.63351 -40.29920 -38.21550 -36.24797 -34.94398 -32.84289 -32.02513 -31.65047 -31.44144 -29.36803 -28.79076 -26.23750 -24.27789 -23.74106 -23.09411 -22.81033 -21.85599 -20.52779 -19.25108 -17.54088 -17.32929 -16.89696 -16.60003 -16.02769 -15.92544 -15.72566 -15.30248 -15.06644 -14.74261 -13.98420 -13.92432 -13.76618 -13.55379 -13.45868 -13.15214 -13.00732 -12.84797 -12.78701 -12.27956 -11.98607 -11.76997 -11.62951 -11.02720 -10.83277 -10.66244 -10.45627 -10.03459 -9.89750 -9.73405 -9.59089 -9.54553 -9.36149 -9.23432 -9.14256 -8.39165 -8.06426 -5.89030 -3.56289 0.81717 0.92753 1.79810 2.39000 2.66979 3.51669 3.53450 3.60889 3.74862 3.95261 3.99937 4.21472 4.27681 4.48335 4.52813 4.67977 4.69455 4.77701 4.93494 4.98533 4.99213 5.01110 5.26383 5.36277 5.38428 5.43543 5.50083 5.54453 5.61191 5.66993 5.73766 5.87377 5.96444 5.98283 6.05857 6.22340 6.43678 6.45044 6.54390 6.61072 6.88149 7.40770 7.70523 7.75848 8.01948 8.46515 9.50865 10.04690 11.23702 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011568 B = 0.004141 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.927603 B = 6760.739838 C = 8704.571712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.044 3.956 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.353 4.353 8 H 0.078 0.922 9 O -0.326 6.326 10 C 0.102 3.898 11 C 0.178 3.822 12 H 0.086 0.914 13 O -0.354 6.354 14 C 0.058 3.942 15 C -0.072 4.072 16 C -0.230 4.230 17 C 0.058 3.942 18 N -0.384 5.384 19 C 0.181 3.819 20 C -0.067 4.067 21 C -0.156 4.156 22 C 0.096 3.904 23 N -0.478 5.478 24 C 0.100 3.900 25 C -0.136 4.136 26 N -0.258 5.258 27 C 0.056 3.944 28 H 0.268 0.732 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.174 0.826 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.132 0.868 39 H 0.156 0.844 40 H 0.160 0.840 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.949 -17.131 -1.018 27.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.153 4.153 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.431 4.431 8 H 0.096 0.904 9 O -0.242 6.242 10 C 0.024 3.976 11 C 0.118 3.882 12 H 0.104 0.896 13 O -0.272 6.272 14 C -0.020 4.020 15 C -0.110 4.110 16 C -0.242 4.242 17 C -0.084 4.084 18 N -0.168 5.168 19 C 0.060 3.940 20 C -0.076 4.076 21 C -0.177 4.177 22 C -0.061 4.061 23 N -0.187 5.187 24 C -0.056 4.056 25 C -0.156 4.156 26 N -0.079 5.079 27 C -0.114 4.114 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.191 0.809 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.150 0.850 39 H 0.174 0.826 40 H 0.177 0.823 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 19.287 -17.774 -1.816 26.291 hybrid contribution 1.786 0.948 0.445 2.070 sum 21.074 -16.826 -1.371 27.002 Atomic orbital electron populations 1.69698 1.05354 1.27094 1.53970 1.24285 0.94823 0.98202 0.97960 0.86172 0.80366 0.82159 0.78094 1.20869 1.21832 1.18391 1.20354 0.78337 0.95119 1.49332 0.90447 1.85224 1.20527 1.24368 1.94066 1.21881 0.87217 0.88457 1.00018 1.20620 0.94290 0.85573 0.87702 0.89635 1.88229 1.21056 1.79936 1.37932 1.22622 0.82501 0.95392 1.01439 1.20669 0.99468 0.94161 0.96751 1.19963 1.02102 0.96717 1.05394 1.21787 0.97709 0.95952 0.92988 1.48696 1.25449 1.12830 1.29783 1.20469 0.94667 0.79669 0.99159 1.20218 0.96155 0.96105 0.95091 1.22015 0.99031 0.98352 0.98277 1.22754 0.89244 0.97356 0.96752 1.67684 1.33769 1.15312 1.01967 1.22849 0.95483 0.91965 0.95330 1.22091 0.94236 0.99330 0.99950 1.77027 1.11573 0.96188 1.23088 1.23019 0.96465 0.96708 0.95207 0.92221 0.92949 0.94389 0.88475 0.93101 0.90448 0.90488 0.80933 0.87532 0.88642 0.84967 0.82644 0.82319 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.44 13.96 55.48 0.77 -28.66 16 2 C 0.04 1.37 5.49 -17.51 -0.10 1.27 16 3 Si 0.90 24.14 28.62 -169.99 -4.86 19.27 16 4 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 6 H -0.26 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.35 -11.01 10.35 30.88 0.32 -10.69 16 8 H 0.08 2.52 8.00 -52.49 -0.42 2.10 16 9 O -0.33 -9.20 8.60 -18.76 -0.16 -9.36 16 10 C 0.10 2.39 5.67 37.16 0.21 2.60 16 11 C 0.18 3.45 3.33 -27.75 -0.09 3.36 16 12 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 13 O -0.35 -6.81 10.35 -37.49 -0.39 -7.20 16 14 C 0.06 0.77 6.75 37.47 0.25 1.03 16 15 C -0.07 -0.81 6.57 -27.44 -0.18 -0.99 16 16 C -0.23 -3.10 5.98 -104.95 -0.63 -3.73 16 17 C 0.06 0.62 11.42 -17.44 -0.20 0.42 16 18 N -0.38 -4.56 3.69 -62.74 -0.23 -4.79 16 19 C 0.18 1.44 6.69 -5.19 -0.03 1.41 16 20 C -0.07 -0.66 5.35 -104.32 -0.56 -1.22 16 21 C -0.16 -1.46 9.82 -39.44 -0.39 -1.85 16 22 C 0.10 1.01 11.18 -17.55 -0.20 0.82 16 23 N -0.48 -6.11 10.36 -13.25 -0.14 -6.25 16 24 C 0.10 1.16 11.18 -17.55 -0.20 0.97 16 25 C -0.14 -1.46 9.82 -39.44 -0.39 -1.85 16 26 N -0.26 -4.18 12.32 33.77 0.42 -3.77 16 27 C 0.06 0.95 6.55 -82.34 -0.54 0.41 16 28 H 0.27 8.04 8.31 -40.82 -0.34 7.70 16 29 H 0.05 1.21 8.12 -51.93 -0.42 0.79 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.11 0.47 8.03 -51.93 -0.42 0.05 16 37 H 0.10 0.65 8.10 -51.93 -0.42 0.22 16 38 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 39 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 41 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -38.66 355.01 -7.41 -46.07 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.46 Total: -2.62 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.71 Total: -8.04 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.82 Total: -43.47 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.55 Total: -16.56 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -4.86 Total: 19.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.66 -7.41 -46.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.597 kcal (2) G-P(sol) polarization free energy of solvation -38.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds