Wall clock time and date at job start Tue Mar 31 2020 11:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39216 * 119.54680 * 2 1 4 4 C 1.36313 * 121.02790 * 179.97438 * 3 2 1 5 5 C 1.40168 * 119.58844 * 0.02562 * 4 3 2 6 6 N 1.34100 * 121.93597 * 179.97438 * 5 4 3 7 7 C 1.31706 * 120.37072 * 180.02562 * 6 5 4 8 8 O 1.35426 * 118.61088 * 179.97438 * 7 6 5 9 9 N 1.32914 * 122.78269 * 359.97438 * 7 6 5 10 10 C 1.32292 * 121.48036 * 0.02562 * 9 7 6 11 11 O 1.35273 * 120.84162 * 179.97438 * 10 9 7 12 12 C 1.42900 * 117.00233 * 359.97438 * 11 10 9 13 13 C 1.53934 * 113.73040 * 246.73174 * 12 11 10 14 14 N 1.47962 * 86.17828 * 221.91792 * 13 12 11 15 15 C 1.46908 * 110.99931 * 137.58081 * 14 13 12 16 16 C 1.50693 * 109.46736 * 70.64161 * 15 14 13 17 17 H 1.08004 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99994 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99469 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00234 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47104 * 60.00584 * 20 18 16 22 22 H 1.48502 * 109.47013 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47392 * 300.00590 * 20 18 16 24 24 C 1.47960 * 90.76232 * 24.69333 * 14 13 12 25 25 C 1.41496 * 118.31274 * 359.97438 * 10 9 7 26 26 C 1.36365 * 119.54349 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47181 * 90.00689 * 1 2 3 28 28 H 1.09002 * 109.46942 * 210.00333 * 1 2 3 29 29 H 1.08996 * 109.47260 * 329.99964 * 1 2 3 30 30 H 1.08000 * 119.48608 * 359.97329 * 3 2 1 31 31 H 1.07993 * 120.20354 * 180.02562 * 4 3 2 32 32 H 0.96699 * 113.99980 * 269.98387 * 8 7 6 33 33 H 1.08999 * 112.93613 * 18.43452 * 12 11 10 34 34 H 1.09005 * 113.76141 * 336.23269 * 13 12 11 35 35 H 1.08995 * 113.76336 * 107.60573 * 13 12 11 36 36 H 1.09001 * 109.46847 * 190.64357 * 15 14 13 37 37 H 1.08997 * 109.47203 * 310.64340 * 15 14 13 38 38 H 0.97004 * 119.99786 * 180.02562 * 19 18 16 39 39 H 1.09007 * 113.75884 * 220.99585 * 24 14 13 40 40 H 1.08993 * 113.76374 * 89.62691 * 24 14 13 41 41 H 1.08000 * 120.24819 * 0.04090 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.2111 0.0000 4 6 3.5562 1.2463 0.0005 5 6 4.2796 0.0457 0.0005 6 7 5.6205 0.0255 0.0005 7 6 6.2691 -1.1208 0.0000 8 8 7.6232 -1.0997 -0.0005 9 7 5.6510 -2.2975 0.0000 10 6 4.3309 -2.3844 0.0000 11 8 3.7152 -3.5889 -0.0006 12 6 4.5536 -4.7461 -0.0017 13 6 4.4657 -5.5735 -1.2968 14 7 4.4694 -6.7645 -0.4189 15 6 3.4893 -7.7587 -0.8763 16 6 3.9688 -8.3821 -2.1617 17 1 4.9078 -8.0713 -2.5954 18 6 3.2091 -9.3501 -2.7838 19 7 2.0659 -9.7290 -2.2554 20 14 3.8030 -10.1224 -4.3776 21 1 5.1117 -10.7857 -4.1486 22 1 2.8123 -11.1274 -4.8399 23 1 3.9568 -9.0677 -5.4115 24 6 3.9291 -5.9643 0.7022 25 6 3.5794 -1.1855 0.0005 26 6 2.1794 -1.1864 0.0005 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.6379 2.1372 -0.0004 31 1 4.0752 2.1934 0.0009 32 1 8.0161 -1.0936 -0.8841 33 1 5.5742 -4.5316 0.3155 34 1 3.5335 -5.4345 -1.8444 35 1 5.3488 -5.4925 -1.9305 36 1 3.3757 -8.5327 -0.1172 37 1 2.5290 -7.2714 -1.0448 38 1 1.5316 -10.4103 -2.6929 39 1 4.3835 -6.1953 1.6658 40 1 2.8401 -5.9395 0.7393 41 1 1.6360 -2.1197 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227348022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:14 Heat of formation + Delta-G solvation = 4.274509 kcal Electronic energy + Delta-G solvation = -25325.248824 eV Core-core repulsion = 21592.285596 eV Total energy + Delta-G solvation = -3732.963228 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.73264 -41.24728 -39.70774 -39.12517 -37.39833 -35.10781 -34.64790 -32.77230 -32.19832 -31.12672 -27.88185 -27.53847 -27.04210 -25.76521 -24.38323 -23.83472 -22.95832 -21.19445 -20.75663 -19.66599 -18.89146 -18.57639 -18.18381 -17.42751 -17.02994 -16.75182 -16.40921 -16.20047 -15.86608 -15.43795 -15.21207 -15.05419 -14.74895 -14.33180 -14.06950 -13.89750 -13.81578 -13.51907 -13.32877 -13.16584 -13.02411 -12.84732 -12.67641 -12.57724 -12.45466 -12.28029 -12.07930 -11.94300 -11.62776 -11.28804 -11.09787 -10.68176 -10.48698 -10.27267 -9.75591 -9.12759 -8.26822 -6.37669 -0.85073 -0.48821 0.73251 1.38531 1.41327 1.41888 1.50110 1.70131 2.05981 2.36849 2.82521 2.91993 3.05336 3.08296 3.28725 3.36325 3.48119 3.78280 3.91933 4.03265 4.07636 4.18180 4.31873 4.41043 4.55594 4.61321 4.63247 4.71502 4.75461 4.84184 4.89494 4.90762 5.00180 5.04976 5.11689 5.26836 5.44985 5.47188 5.60024 5.69774 5.76347 5.89373 6.01248 6.28105 6.50737 6.75812 6.84798 7.32129 8.84725 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.003096 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.736119 B = 9040.987512 C =10101.880410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.048 4.048 4 C -0.115 4.115 5 C 0.175 3.825 6 N -0.549 5.549 7 C 0.526 3.474 8 O -0.463 6.463 9 N -0.612 5.612 10 C 0.419 3.581 11 O -0.282 6.282 12 C 0.070 3.930 13 C 0.013 3.987 14 N -0.484 5.484 15 C 0.179 3.821 16 C -0.534 4.534 17 H 0.060 0.940 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.970 3.030 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.267 1.267 24 C 0.006 3.994 25 C -0.185 4.185 26 C -0.072 4.072 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.177 0.823 31 H 0.162 0.838 32 H 0.431 0.569 33 H 0.130 0.870 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.010 0.990 37 H -0.020 1.020 38 H 0.267 0.733 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 25.148 4.191 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.069 4.069 4 C -0.134 4.134 5 C 0.050 3.950 6 N -0.280 5.280 7 C 0.221 3.779 8 O -0.270 6.270 9 N -0.357 5.357 10 C 0.221 3.779 11 O -0.183 6.183 12 C 0.013 3.987 13 C -0.116 4.116 14 N -0.209 5.209 15 C 0.052 3.948 16 C -0.572 4.572 17 H 0.078 0.922 18 C -0.193 4.193 19 N -0.570 5.570 20 Si 0.794 3.206 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.122 4.122 25 C -0.190 4.190 26 C -0.093 4.093 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.195 0.805 31 H 0.180 0.820 32 H 0.294 0.706 33 H 0.148 0.852 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.028 0.972 37 H -0.002 1.002 38 H 0.076 0.924 39 H 0.130 0.870 40 H 0.091 0.909 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.150 24.633 4.837 25.104 hybrid contribution -0.881 -0.967 -1.318 1.857 sum -0.731 23.666 3.520 23.937 Atomic orbital electron populations 1.20922 0.88172 1.04390 1.03679 1.20124 0.98417 0.92118 0.98642 1.21438 0.93218 0.99251 0.92985 1.20949 0.94265 0.96057 1.02096 1.18961 0.87800 0.93289 0.94974 1.68394 1.08942 1.28842 1.21865 1.19837 0.86212 0.82315 0.89581 1.84641 1.11100 1.95047 1.36207 1.67290 1.10329 1.31669 1.26394 1.20273 0.86835 0.86558 0.84190 1.86321 1.35925 1.11822 1.84230 1.24789 0.96323 0.79992 0.97578 1.24156 1.02164 0.89559 0.95731 1.68515 1.41235 1.06460 1.04642 1.19884 0.88760 0.90837 0.95306 1.21358 1.06319 1.21843 1.07680 0.92171 1.25900 0.94867 0.96989 1.01570 1.70063 1.13893 1.31634 1.41444 0.85433 0.78194 0.78211 0.78795 1.19363 1.20515 1.19227 1.24327 0.99907 0.89880 0.98124 1.18852 0.96835 0.91317 1.12039 1.20936 0.90826 1.00198 0.97321 0.89860 0.91222 0.88881 0.80545 0.82040 0.70570 0.85231 0.91892 0.89136 0.97212 1.00221 0.92448 0.86972 0.90851 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.98 71.24 0.71 -0.36 16 2 C -0.09 -1.39 5.85 -20.06 -0.12 -1.51 16 3 C -0.05 -0.58 9.59 22.06 0.21 -0.37 16 4 C -0.11 -1.94 10.01 22.29 0.22 -1.72 16 5 C 0.17 4.35 6.61 40.11 0.27 4.62 16 6 N -0.55 -15.13 10.47 -307.66 -3.22 -18.35 16 7 C 0.53 14.97 8.65 180.57 1.56 16.54 16 8 O -0.46 -10.86 13.63 -87.21 -1.19 -12.05 16 9 N -0.61 -18.94 8.76 -425.22 -3.72 -22.67 16 10 C 0.42 12.74 7.57 85.43 0.65 13.39 16 11 O -0.28 -8.96 9.51 -85.58 -0.81 -9.78 16 12 C 0.07 2.32 4.38 31.24 0.14 2.46 16 13 C 0.01 0.51 7.30 86.40 0.63 1.14 16 14 N -0.48 -21.32 6.25 -916.39 -5.73 -27.05 16 15 C 0.18 9.57 4.58 85.55 0.39 9.96 16 16 C -0.53 -30.51 8.84 25.60 0.23 -30.28 16 17 H 0.06 3.39 7.80 -2.91 -0.02 3.36 16 18 C 0.01 0.31 5.46 84.66 0.46 0.78 16 19 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 20 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 C 0.01 0.22 7.81 86.41 0.67 0.90 16 25 C -0.19 -4.90 5.75 -21.21 -0.12 -5.02 16 26 C -0.07 -1.55 9.21 22.26 0.21 -1.35 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.71 8.07 -2.39 -0.02 0.69 16 29 H 0.09 0.46 8.08 -2.39 -0.02 0.44 16 30 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 31 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.43 5.47 9.06 -74.06 -0.67 4.80 16 33 H 0.13 4.27 6.92 -2.39 -0.02 4.25 16 34 H 0.06 2.64 7.78 -2.38 -0.02 2.62 16 35 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H -0.02 -1.13 7.69 -2.39 -0.02 -1.15 16 38 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16 40 H 0.07 2.64 7.79 -2.39 -0.02 2.62 16 41 H 0.14 2.96 7.72 -2.91 -0.02 2.93 16 Total: -1.00 -72.32 352.26 -5.86 -78.18 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.40 Total: 11.71 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 6.11 Total: 9.16 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -12.39 Total: -123.43 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -2.00 Total: -21.83 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -72.32 -5.86 -78.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227348022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.456 kcal (2) G-P(sol) polarization free energy of solvation -72.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds