Wall clock time and date at job start Tue Mar 31 2020 11:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36340 * 120.20371 * 2 1 4 4 C 1.39183 * 121.02912 * 180.02562 * 3 2 1 5 5 C 1.36396 * 120.90297 * 359.95746 * 4 3 2 6 6 C 1.39954 * 119.51556 * 0.02562 * 5 4 3 7 7 C 1.41509 * 122.05408 * 179.97438 * 6 5 4 8 8 O 1.35271 * 120.83852 * 359.97438 * 7 6 5 9 9 C 1.42897 * 116.99663 * 179.97438 * 8 7 6 10 10 H 1.09003 * 110.88906 * 327.56667 * 9 8 7 11 11 C 1.55155 * 111.00492 * 203.64783 * 9 8 7 12 12 C 1.54320 * 102.94646 * 206.42135 * 11 9 8 13 13 N 1.47026 * 107.26822 * 22.19512 * 12 11 9 14 14 C 1.36934 * 125.64727 * 181.02684 * 13 12 11 15 15 H 1.07999 * 120.00210 * 173.97863 * 14 13 12 16 16 C 1.38817 * 120.00299 * 353.97431 * 14 13 12 17 17 N 1.31619 * 119.99384 * 6.84766 * 16 14 13 18 18 Si 1.86798 * 120.00239 * 186.84993 * 16 14 13 19 19 H 1.48504 * 109.47060 * 94.98448 * 18 16 14 20 20 H 1.48489 * 109.47175 * 214.98220 * 18 16 14 21 21 H 1.48495 * 109.47124 * 334.98724 * 18 16 14 22 22 C 1.47426 * 108.70143 * 1.05433 * 13 12 11 23 23 N 1.32289 * 118.31464 * 179.97438 * 7 6 5 24 24 C 1.32908 * 121.48453 * 0.02562 * 23 7 6 25 25 O 1.35426 * 118.60646 * 180.02562 * 24 23 7 26 26 N 1.31708 * 122.78959 * 359.97438 * 24 23 7 27 27 C 1.34109 * 120.37156 * 359.73505 * 26 24 23 28 28 H 1.09006 * 109.46663 * 90.00203 * 1 2 3 29 29 H 1.09001 * 109.47089 * 330.00228 * 1 2 3 30 30 H 1.08997 * 109.47035 * 209.99732 * 1 2 3 31 31 H 1.08007 * 119.48795 * 0.02562 * 3 2 1 32 32 H 1.07995 * 119.54432 * 179.97438 * 4 3 2 33 33 H 1.07994 * 120.24581 * 179.97438 * 5 4 3 34 34 H 1.09006 * 110.71895 * 324.78572 * 11 9 8 35 35 H 1.08999 * 110.72271 * 88.05939 * 11 9 8 36 36 H 1.08993 * 109.88861 * 262.77480 * 12 11 9 37 37 H 1.09004 * 110.00913 * 141.67684 * 12 11 9 38 38 H 0.97009 * 119.99727 * 179.97438 * 17 16 14 39 39 H 1.08999 * 110.36447 * 217.03180 * 22 13 12 40 40 H 1.09000 * 110.45538 * 94.76668 * 22 13 12 41 41 H 0.96695 * 114.00149 * 90.00196 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1783 0.0000 4 6 3.5846 1.1984 -0.0005 5 6 4.3019 0.0382 -0.0002 6 6 3.6286 -1.1887 0.0001 7 6 4.3187 -2.4241 0.0000 8 8 5.6709 -2.4630 -0.0011 9 6 6.2826 -3.7544 -0.0006 10 1 5.6727 -4.4732 0.5466 11 6 7.7203 -3.6885 0.5792 12 6 8.4212 -4.8852 -0.0977 13 7 7.6668 -5.1984 -1.3202 14 6 7.9525 -6.2108 -2.1969 15 1 7.2810 -6.4213 -3.0161 16 6 9.1053 -6.9665 -2.0328 17 7 9.8534 -6.8015 -0.9625 18 14 9.5949 -8.2173 -3.3309 19 1 10.5596 -7.5988 -4.2754 20 1 10.2270 -9.3899 -2.6749 21 1 8.3872 -8.6574 -4.0745 22 6 6.5523 -4.2416 -1.4461 23 7 3.6080 -3.5399 0.0008 24 6 2.2792 -3.5164 0.0013 25 8 1.6099 -4.6937 0.0028 26 7 1.5855 -2.3968 0.0015 27 6 2.2120 -1.2110 0.0065 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5138 31 1 1.6478 2.1108 0.0004 32 1 4.1035 2.1455 -0.0009 33 1 5.3815 0.0662 -0.0010 34 1 8.2047 -2.7517 0.3037 35 1 7.7055 -3.8125 1.6620 36 1 8.4158 -5.7452 0.5718 37 1 9.4474 -4.6207 -0.3530 38 1 10.6588 -7.3299 -0.8476 39 1 5.6700 -4.7381 -1.8500 40 1 6.8395 -3.4038 -2.0815 41 1 1.4158 -5.0348 0.8865 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229406914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:59 Heat of formation + Delta-G solvation = 25.228699 kcal Electronic energy + Delta-G solvation = -25826.449776 eV Core-core repulsion = 22094.395189 eV Total energy + Delta-G solvation = -3732.054586 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66174 -39.29172 -38.68655 -36.83374 -36.07268 -33.98121 -32.33629 -32.29977 -30.40462 -29.29912 -27.48246 -27.06812 -25.10714 -24.17588 -24.12600 -21.43767 -20.83686 -20.22278 -19.75227 -18.47636 -17.73319 -17.36934 -16.85884 -16.10192 -15.87034 -15.19839 -14.87837 -14.71468 -14.33996 -14.20932 -13.99364 -13.77632 -13.09082 -12.93447 -12.77949 -12.47728 -12.21604 -12.12059 -11.99924 -11.88530 -11.82920 -11.71599 -11.00567 -10.95559 -10.90674 -10.75373 -10.42475 -10.13520 -9.97159 -9.90274 -9.69366 -9.31332 -9.29591 -8.63065 -8.16730 -6.90628 -5.77385 -3.10592 0.15951 0.50077 1.70779 2.63050 2.71793 3.11708 3.39540 3.44983 3.46969 3.81921 4.01071 4.38235 4.40945 4.50822 4.62493 4.87679 4.99764 5.02115 5.17469 5.30939 5.34764 5.48022 5.50259 5.53032 5.53773 5.64109 5.67302 5.87516 5.98215 6.05803 6.13252 6.18410 6.28989 6.35766 6.49375 6.52372 6.59818 6.78805 7.17426 7.44274 7.46282 7.51836 7.75876 7.98088 8.18461 9.15831 9.75383 10.39738 11.35071 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.003164 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.088954 B = 8846.987299 C = 9546.131246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.083 4.083 3 C -0.073 4.073 4 C -0.138 4.138 5 C -0.051 4.051 6 C -0.178 4.178 7 C 0.439 3.561 8 O -0.279 6.279 9 C 0.068 3.932 10 H 0.100 0.900 11 C -0.137 4.137 12 C 0.178 3.822 13 N -0.600 5.600 14 C -0.230 4.230 15 H 0.080 0.920 16 C -0.006 4.006 17 N -0.921 5.921 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.126 3.874 23 N -0.592 5.592 24 C 0.543 3.457 25 O -0.457 6.457 26 N -0.544 5.544 27 C 0.203 3.797 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.253 0.747 39 H 0.047 0.953 40 H 0.026 0.974 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.465 16.323 6.464 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.085 4.085 3 C -0.094 4.094 4 C -0.156 4.156 5 C -0.072 4.072 6 C -0.183 4.183 7 C 0.240 3.760 8 O -0.179 6.179 9 C 0.012 3.988 10 H 0.118 0.882 11 C -0.175 4.175 12 C 0.054 3.946 13 N -0.328 5.328 14 C -0.358 4.358 15 H 0.098 0.902 16 C -0.202 4.202 17 N -0.568 5.568 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.001 4.001 23 N -0.336 5.336 24 C 0.237 3.763 25 O -0.260 6.260 26 N -0.276 5.276 27 C 0.077 3.923 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -15.643 15.476 5.844 22.767 hybrid contribution 0.795 -0.428 -0.219 0.929 sum -14.848 15.047 5.625 21.875 Atomic orbital electron populations 1.20635 0.89644 1.03042 1.02659 1.19391 0.96896 0.90113 1.02067 1.20940 0.94321 0.97553 0.96579 1.20905 0.93955 0.98515 1.02205 1.20936 1.00791 0.90445 0.94993 1.18687 0.94431 0.93365 1.11817 1.20054 0.85194 0.87705 0.83017 1.86212 1.13019 1.35021 1.83660 1.24084 0.93926 0.80427 1.00393 0.88190 1.23111 0.92486 1.01912 1.00022 1.21219 0.94421 0.91806 0.87167 1.44307 1.29702 1.33242 1.25532 1.19076 1.04366 1.07142 1.05178 0.90250 1.24829 0.97309 1.00036 0.98033 1.69950 1.16771 1.43532 1.26590 0.86070 0.78410 0.80362 0.80790 1.21533 1.21682 1.20529 1.21797 0.92499 0.93397 0.92367 1.67458 1.09359 1.31401 1.25390 1.19750 0.82677 0.85363 0.88473 1.84699 1.74514 1.32679 1.34131 1.68315 1.39751 0.97242 1.22288 1.18307 0.88090 0.91692 0.94173 0.91070 0.91633 0.90361 0.84931 0.84992 0.84137 0.91045 0.91216 0.93300 0.92740 0.93621 0.93437 0.95609 0.72944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 9.82 36.01 0.35 -0.52 16 2 C -0.08 -0.89 5.88 -104.60 -0.62 -1.50 16 3 C -0.07 -0.62 9.59 -39.91 -0.38 -1.00 16 4 C -0.14 -1.20 9.96 -39.89 -0.40 -1.59 16 5 C -0.05 -0.57 9.61 -39.60 -0.38 -0.96 16 6 C -0.18 -2.48 5.75 -106.70 -0.61 -3.09 16 7 C 0.44 7.06 7.57 -16.11 -0.12 6.93 16 8 O -0.28 -4.65 9.30 -17.50 -0.16 -4.81 16 9 C 0.07 1.27 3.24 -24.59 -0.08 1.19 16 10 H 0.10 1.93 7.22 -51.93 -0.37 1.56 16 11 C -0.14 -2.54 6.69 -24.90 -0.17 -2.71 16 12 C 0.18 4.29 5.38 -3.06 -0.02 4.27 16 13 N -0.60 -15.63 3.39 -170.08 -0.58 -16.20 16 14 C -0.23 -6.51 10.26 -15.06 -0.15 -6.66 16 15 H 0.08 2.20 7.84 -52.49 -0.41 1.78 16 16 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 17 N -0.92 -26.88 10.36 55.49 0.57 -26.30 16 18 Si 0.91 22.23 29.56 -169.99 -5.02 17.21 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.13 2.79 6.97 -2.53 -0.02 2.77 16 23 N -0.59 -10.00 8.90 -14.40 -0.13 -10.13 16 24 C 0.54 8.37 8.65 -91.26 -0.79 7.58 16 25 O -0.46 -6.07 13.63 -17.97 -0.24 -6.31 16 26 N -0.54 -8.00 9.61 -12.79 -0.12 -8.12 16 27 C 0.20 2.78 6.59 -84.85 -0.56 2.22 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.08 0.75 7.60 -51.93 -0.39 0.35 16 31 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 33 H 0.14 1.44 7.72 -52.49 -0.40 1.03 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 1.28 7.54 -51.93 -0.39 0.89 16 37 H 0.05 1.43 7.36 -51.93 -0.38 1.05 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.41 3.15 9.06 45.56 0.41 3.56 16 LS Contribution 345.06 15.07 5.20 5.20 Total: -1.00 -33.20 345.06 -8.98 -42.19 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.46 Total: 0.62 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -4.04 Total: 6.66 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.25 Total: -60.75 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.41 Total: -11.13 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.20 -8.98 -42.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229406914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.416 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds