Wall clock time and date at job start Tue Mar 31 2020 11:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36340 * 120.20371 * 2 1 4 4 C 1.39183 * 121.02912 * 180.02562 * 3 2 1 5 5 C 1.36396 * 120.90297 * 359.95746 * 4 3 2 6 6 C 1.39954 * 119.51556 * 0.02562 * 5 4 3 7 7 C 1.41509 * 122.05408 * 179.97438 * 6 5 4 8 8 O 1.35271 * 120.83852 * 359.97438 * 7 6 5 9 9 C 1.42897 * 116.99663 * 179.97438 * 8 7 6 10 10 H 1.09003 * 110.88906 * 327.56667 * 9 8 7 11 11 C 1.55155 * 111.00492 * 203.64783 * 9 8 7 12 12 C 1.54320 * 102.94646 * 206.42135 * 11 9 8 13 13 N 1.47026 * 107.26822 * 22.19512 * 12 11 9 14 14 C 1.36934 * 125.64727 * 181.02684 * 13 12 11 15 15 H 1.07999 * 120.00210 * 173.97863 * 14 13 12 16 16 C 1.38817 * 120.00299 * 353.97431 * 14 13 12 17 17 N 1.31619 * 119.99384 * 6.84766 * 16 14 13 18 18 Si 1.86798 * 120.00239 * 186.84993 * 16 14 13 19 19 H 1.48504 * 109.47060 * 94.98448 * 18 16 14 20 20 H 1.48489 * 109.47175 * 214.98220 * 18 16 14 21 21 H 1.48495 * 109.47124 * 334.98724 * 18 16 14 22 22 C 1.47426 * 108.70143 * 1.05433 * 13 12 11 23 23 N 1.32289 * 118.31464 * 179.97438 * 7 6 5 24 24 C 1.32908 * 121.48453 * 0.02562 * 23 7 6 25 25 O 1.35426 * 118.60646 * 180.02562 * 24 23 7 26 26 N 1.31708 * 122.78959 * 359.97438 * 24 23 7 27 27 C 1.34109 * 120.37156 * 359.73505 * 26 24 23 28 28 H 1.09006 * 109.46663 * 90.00203 * 1 2 3 29 29 H 1.09001 * 109.47089 * 330.00228 * 1 2 3 30 30 H 1.08997 * 109.47035 * 209.99732 * 1 2 3 31 31 H 1.08007 * 119.48795 * 0.02562 * 3 2 1 32 32 H 1.07995 * 119.54432 * 179.97438 * 4 3 2 33 33 H 1.07994 * 120.24581 * 179.97438 * 5 4 3 34 34 H 1.09006 * 110.71895 * 324.78572 * 11 9 8 35 35 H 1.08999 * 110.72271 * 88.05939 * 11 9 8 36 36 H 1.08993 * 109.88861 * 262.77480 * 12 11 9 37 37 H 1.09004 * 110.00913 * 141.67684 * 12 11 9 38 38 H 0.97009 * 119.99727 * 179.97438 * 17 16 14 39 39 H 1.08999 * 110.36447 * 217.03180 * 22 13 12 40 40 H 1.09000 * 110.45538 * 94.76668 * 22 13 12 41 41 H 0.96695 * 114.00149 * 90.00196 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1783 0.0000 4 6 3.5846 1.1984 -0.0005 5 6 4.3019 0.0382 -0.0002 6 6 3.6286 -1.1887 0.0001 7 6 4.3187 -2.4241 0.0000 8 8 5.6709 -2.4630 -0.0011 9 6 6.2826 -3.7544 -0.0006 10 1 5.6727 -4.4732 0.5466 11 6 7.7203 -3.6885 0.5792 12 6 8.4212 -4.8852 -0.0977 13 7 7.6668 -5.1984 -1.3202 14 6 7.9525 -6.2108 -2.1969 15 1 7.2810 -6.4213 -3.0161 16 6 9.1053 -6.9665 -2.0328 17 7 9.8534 -6.8015 -0.9625 18 14 9.5949 -8.2173 -3.3309 19 1 10.5596 -7.5988 -4.2754 20 1 10.2270 -9.3899 -2.6749 21 1 8.3872 -8.6574 -4.0745 22 6 6.5523 -4.2416 -1.4461 23 7 3.6080 -3.5399 0.0008 24 6 2.2792 -3.5164 0.0013 25 8 1.6099 -4.6937 0.0028 26 7 1.5855 -2.3968 0.0015 27 6 2.2120 -1.2110 0.0065 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5138 31 1 1.6478 2.1108 0.0004 32 1 4.1035 2.1455 -0.0009 33 1 5.3815 0.0662 -0.0010 34 1 8.2047 -2.7517 0.3037 35 1 7.7055 -3.8125 1.6620 36 1 8.4158 -5.7452 0.5718 37 1 9.4474 -4.6207 -0.3530 38 1 10.6588 -7.3299 -0.8476 39 1 5.6700 -4.7381 -1.8500 40 1 6.8395 -3.4038 -2.0815 41 1 1.4158 -5.0348 0.8865 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229406914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:58 Heat of formation + Delta-G solvation = -0.848856 kcal Electronic energy + Delta-G solvation = -25827.580583 eV Core-core repulsion = 22094.395189 eV Total energy + Delta-G solvation = -3733.185394 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.70987 -40.61344 -39.62756 -38.41669 -37.20397 -35.05365 -34.22164 -33.28159 -31.54651 -31.01141 -29.19746 -27.83748 -26.78735 -25.57791 -25.13653 -22.61519 -22.15795 -22.02962 -20.81823 -19.68728 -19.01872 -18.79813 -18.21503 -17.25478 -16.96660 -16.75590 -16.32805 -15.97945 -15.78637 -15.50032 -15.10157 -14.81342 -14.55070 -14.22054 -14.05256 -13.84255 -13.55236 -13.47379 -13.10040 -12.98678 -12.84742 -12.73764 -12.71890 -12.62595 -12.25976 -12.22296 -12.05650 -11.95108 -11.80236 -11.60067 -11.17847 -10.75347 -10.42798 -10.18334 -9.09174 -8.99877 -7.92949 -5.29269 -0.82267 -0.44491 0.75786 1.40935 1.44898 1.46683 1.55762 1.76682 2.08074 2.45487 2.85909 2.96205 3.25733 3.36215 3.49825 3.57597 3.68034 3.85185 3.88579 4.03282 4.11930 4.15621 4.30528 4.46476 4.56270 4.63451 4.70775 4.75050 4.85978 4.87957 4.88812 4.92294 5.16246 5.25799 5.34538 5.37219 5.42109 5.54505 5.62018 5.67130 5.81368 5.92503 6.11952 6.51633 6.87883 7.02429 7.65785 8.29784 9.17937 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.003164 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.088954 B = 8846.987299 C = 9546.131246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.094 4.094 3 C -0.058 4.058 4 C -0.115 4.115 5 C -0.072 4.072 6 C -0.186 4.186 7 C 0.418 3.582 8 O -0.275 6.275 9 C 0.090 3.910 10 H 0.092 0.908 11 C -0.119 4.119 12 C 0.185 3.815 13 N -0.621 5.621 14 C -0.252 4.252 15 H 0.077 0.923 16 C -0.057 4.057 17 N -0.945 5.945 18 Si 0.981 3.019 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.271 1.271 22 C 0.127 3.873 23 N -0.618 5.618 24 C 0.524 3.476 25 O -0.466 6.466 26 N -0.543 5.543 27 C 0.175 3.825 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.176 0.824 32 H 0.171 0.829 33 H 0.147 0.853 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.019 0.981 37 H 0.026 0.974 38 H 0.251 0.749 39 H 0.033 0.967 40 H 0.028 0.972 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.688 19.412 6.596 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.095 4.095 3 C -0.078 4.078 4 C -0.133 4.133 5 C -0.092 4.092 6 C -0.191 4.191 7 C 0.220 3.780 8 O -0.175 6.175 9 C 0.033 3.967 10 H 0.110 0.890 11 C -0.157 4.157 12 C 0.060 3.940 13 N -0.349 5.349 14 C -0.381 4.381 15 H 0.095 0.905 16 C -0.251 4.251 17 N -0.593 5.593 18 Si 0.808 3.192 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.196 1.196 22 C 0.001 3.999 23 N -0.362 5.362 24 C 0.218 3.782 25 O -0.273 6.273 26 N -0.275 5.275 27 C 0.050 3.950 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.193 0.807 32 H 0.188 0.812 33 H 0.165 0.835 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.037 0.963 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -16.919 18.584 5.992 25.837 hybrid contribution 1.035 -1.208 -0.261 1.612 sum -15.884 17.377 5.730 24.230 Atomic orbital electron populations 1.20668 0.88254 1.03770 1.03018 1.19777 0.98068 0.89689 1.02008 1.21464 0.94427 0.98294 0.93602 1.21405 0.94240 0.99051 0.98574 1.21144 1.01421 0.90280 0.96339 1.18875 0.94613 0.93478 1.12119 1.20330 0.84690 0.88682 0.84268 1.86182 1.13803 1.33029 1.84524 1.23555 0.94138 0.81475 0.97567 0.89006 1.22922 0.91611 1.00084 1.01081 1.20994 0.93706 0.92881 0.86375 1.44573 1.31020 1.33467 1.25864 1.19391 1.04774 1.08109 1.05779 0.90510 1.25667 0.97265 1.02138 1.00009 1.70145 1.16870 1.44344 1.27955 0.85035 0.78103 0.77812 0.78213 1.21057 1.21579 1.19594 1.21827 0.90753 0.92533 0.94812 1.67367 1.10288 1.32358 1.26189 1.19854 0.82473 0.86057 0.89812 1.84654 1.74192 1.32325 1.36080 1.68346 1.39840 0.97594 1.21680 1.18818 0.88424 0.92374 0.95420 0.90813 0.88545 0.92033 0.80653 0.81160 0.83518 0.89244 0.88389 0.96270 0.95572 0.93945 0.94822 0.95464 0.70746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 9.82 71.24 0.70 -0.74 16 2 C -0.09 -1.75 5.88 -19.85 -0.12 -1.86 16 3 C -0.06 -0.69 9.59 22.05 0.21 -0.48 16 4 C -0.12 -1.47 9.96 22.07 0.22 -1.25 16 5 C -0.07 -1.43 9.61 22.26 0.21 -1.22 16 6 C -0.19 -5.05 5.75 -21.21 -0.12 -5.17 16 7 C 0.42 13.61 7.57 85.43 0.65 14.25 16 8 O -0.27 -9.11 9.30 -85.55 -0.80 -9.91 16 9 C 0.09 3.40 3.24 31.98 0.10 3.50 16 10 H 0.09 3.65 7.22 -2.39 -0.02 3.63 16 11 C -0.12 -4.37 6.69 31.78 0.21 -4.16 16 12 C 0.19 9.19 5.38 86.73 0.47 9.66 16 13 N -0.62 -33.47 3.39 -692.00 -2.35 -35.82 16 14 C -0.25 -14.72 10.26 84.04 0.86 -13.85 16 15 H 0.08 4.38 7.84 -2.91 -0.02 4.36 16 16 C -0.06 -3.30 5.48 84.86 0.47 -2.83 16 17 N -0.95 -56.76 10.36 21.65 0.22 -56.53 16 18 Si 0.98 46.47 29.56 68.60 2.03 48.50 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 22 C 0.13 5.77 6.97 86.85 0.61 6.38 16 23 N -0.62 -21.59 8.90 -425.22 -3.78 -25.37 16 24 C 0.52 16.67 8.65 180.57 1.56 18.24 16 25 O -0.47 -12.86 13.63 -87.21 -1.19 -14.05 16 26 N -0.54 -16.09 9.61 -307.65 -2.96 -19.05 16 27 C 0.17 4.62 6.59 40.10 0.26 4.89 16 28 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.10 0.76 8.08 -2.39 -0.02 0.75 16 30 H 0.06 1.09 7.60 -2.39 -0.02 1.08 16 31 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 32 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.15 2.69 7.72 -2.91 -0.02 2.66 16 34 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 35 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.02 1.04 7.54 -2.39 -0.02 1.03 16 37 H 0.03 1.43 7.36 -2.38 -0.02 1.41 16 38 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 39 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.43 6.96 9.06 -74.06 -0.67 6.29 16 Total: -1.00 -75.40 345.06 -2.13 -77.53 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.40 Total: 9.37 kcal Atomic # 6 Polarization: 19.04 SS G_CDS: 6.29 Total: 25.33 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -8.86 Total: -136.78 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -1.98 Total: -23.96 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -75.40 -2.13 -77.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229406914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.680 kcal (2) G-P(sol) polarization free energy of solvation -75.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds