Wall clock time and date at job start Tue Mar 31 2020 11:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36348 * 120.19771 * 2 1 4 4 C 1.39180 * 121.02003 * 180.02562 * 3 2 1 5 5 C 1.36397 * 120.90633 * 359.95218 * 4 3 2 6 6 C 1.39946 * 119.51659 * 0.04635 * 5 4 3 7 7 C 1.41505 * 122.05097 * 180.02562 * 6 5 4 8 8 O 1.35273 * 120.83713 * 359.95168 * 7 6 5 9 9 C 1.42901 * 116.99797 * 180.02562 * 8 7 6 10 10 H 1.09002 * 110.63872 * 26.86114 * 9 8 7 11 11 C 1.55158 * 110.72228 * 150.00318 * 9 8 7 12 12 C 1.54910 * 101.58302 * 154.04236 * 11 9 8 13 13 N 1.47421 * 104.83090 * 322.99048 * 12 11 9 14 14 C 1.36934 * 125.64568 * 204.09223 * 13 12 11 15 15 H 1.08004 * 120.00035 * 163.19260 * 14 13 12 16 16 C 1.38812 * 120.00404 * 343.18775 * 14 13 12 17 17 N 1.31622 * 119.99728 * 331.97362 * 16 14 13 18 18 Si 1.86799 * 120.00267 * 151.97240 * 16 14 13 19 19 H 1.48506 * 109.46858 * 180.02562 * 18 16 14 20 20 H 1.48494 * 109.47388 * 60.00205 * 18 16 14 21 21 H 1.48501 * 109.46953 * 300.00008 * 18 16 14 22 22 C 1.47021 * 108.70506 * 24.35923 * 13 12 11 23 23 N 1.32283 * 118.31789 * 180.22875 * 7 6 5 24 24 C 1.32913 * 121.48062 * 359.49030 * 23 7 6 25 25 O 1.35430 * 118.60622 * 180.25484 * 24 23 7 26 26 N 1.31708 * 122.78597 * 0.52916 * 24 23 7 27 27 C 1.34103 * 120.37678 * 359.74761 * 26 24 23 28 28 H 1.09002 * 109.47471 * 269.97309 * 1 2 3 29 29 H 1.08998 * 109.47526 * 29.98506 * 1 2 3 30 30 H 1.09011 * 109.46752 * 149.97665 * 1 2 3 31 31 H 1.07995 * 119.48995 * 0.02562 * 3 2 1 32 32 H 1.08005 * 119.54025 * 179.97438 * 4 3 2 33 33 H 1.08008 * 120.23924 * 180.02562 * 5 4 3 34 34 H 1.08994 * 111.00148 * 35.96416 * 11 9 8 35 35 H 1.09000 * 111.00332 * 272.11517 * 11 9 8 36 36 H 1.09000 * 110.36435 * 204.15016 * 12 11 9 37 37 H 1.09005 * 110.36581 * 81.83073 * 12 11 9 38 38 H 0.97004 * 120.00411 * 353.95791 * 17 16 14 39 39 H 1.09002 * 109.88500 * 118.13212 * 22 13 12 40 40 H 1.08999 * 109.87960 * 239.29526 * 22 13 12 41 41 H 0.96700 * 113.99430 * 270.26170 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1785 0.0000 4 6 3.5845 1.1984 -0.0005 5 6 4.3018 0.0383 -0.0001 6 6 3.6286 -1.1886 -0.0001 7 6 4.3188 -2.4239 0.0009 8 8 5.6710 -2.4627 0.0009 9 6 6.2829 -3.7540 0.0013 10 1 5.6251 -4.4911 -0.4593 11 6 7.6537 -3.7122 -0.7242 12 6 8.3973 -4.8936 -0.0526 13 7 7.9661 -4.8586 1.3567 14 6 8.6632 -5.3723 2.4175 15 1 8.4145 -5.0704 3.4242 16 6 9.6896 -6.2810 2.1991 17 7 9.6640 -7.0601 1.1385 18 14 11.1069 -6.3981 3.4101 19 1 12.0648 -7.4365 2.9521 20 1 10.5836 -6.7637 4.7508 21 1 11.7996 -5.0870 3.4898 22 6 6.6608 -4.1866 1.4338 23 7 3.6083 -3.5397 -0.0038 24 6 2.2794 -3.5164 0.0007 25 8 1.6102 -4.6938 0.0008 26 7 1.5857 -2.3968 -0.0001 27 6 2.2120 -1.2110 -0.0006 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5143 31 1 1.6478 2.1108 0.0004 32 1 4.1034 2.1456 -0.0009 33 1 5.3815 0.0664 -0.0001 34 1 8.1670 -2.7694 -0.5354 35 1 7.5348 -3.8830 -1.7942 36 1 9.4758 -4.7522 -0.1230 37 1 8.1065 -5.8369 -0.5150 38 1 8.8877 -7.0624 0.5569 39 1 5.9118 -4.8752 1.8250 40 1 6.7328 -3.3096 2.0770 41 1 1.4164 -5.0360 -0.8826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229406917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:01 Heat of formation + Delta-G solvation = 21.538967 kcal Electronic energy + Delta-G solvation = -25827.670275 eV Core-core repulsion = 22095.455689 eV Total energy + Delta-G solvation = -3732.214585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73137 -39.41767 -38.74729 -37.03298 -36.18180 -34.05795 -32.49467 -32.38960 -30.44816 -29.28294 -27.66313 -27.11607 -25.02725 -24.21333 -24.12711 -21.49741 -20.93249 -20.39683 -19.80922 -18.53071 -17.81983 -17.60286 -17.31623 -16.16393 -15.94590 -15.35879 -14.94018 -14.79756 -14.36583 -14.03528 -13.88933 -13.78818 -13.29111 -13.12974 -12.92355 -12.82077 -12.45340 -12.26617 -12.06135 -11.93343 -11.88273 -11.65766 -11.12381 -11.04402 -10.85614 -10.70941 -10.58349 -10.18509 -10.06111 -9.96319 -9.56312 -9.37630 -9.35841 -8.46459 -8.21947 -7.01241 -6.14055 -3.19599 0.10235 0.44391 1.65200 2.55544 2.64764 3.04711 3.49491 3.53048 3.71113 3.76080 3.94176 4.33532 4.36160 4.55882 4.59263 4.82968 4.93525 4.95983 5.03443 5.09499 5.29074 5.29416 5.42785 5.46802 5.49631 5.54598 5.57571 5.79978 5.91586 5.97836 6.01584 6.05384 6.14378 6.17675 6.40412 6.44762 6.53750 6.71024 6.83116 6.91829 7.09759 7.37136 7.73610 7.90961 8.43679 8.96067 9.76108 10.28448 11.18424 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022133 B = 0.003118 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.799371 B = 8978.955369 C = 9581.873013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.083 4.083 3 C -0.072 4.072 4 C -0.136 4.136 5 C -0.052 4.052 6 C -0.177 4.177 7 C 0.438 3.562 8 O -0.277 6.277 9 C 0.071 3.929 10 H 0.102 0.898 11 C -0.130 4.130 12 C 0.146 3.854 13 N -0.598 5.598 14 C -0.338 4.338 15 H 0.066 0.934 16 C -0.024 4.024 17 N -0.915 5.915 18 Si 1.066 2.934 19 H -0.284 1.284 20 H -0.292 1.292 21 H -0.293 1.293 22 C 0.125 3.875 23 N -0.595 5.595 24 C 0.542 3.458 25 O -0.457 6.457 26 N -0.542 5.542 27 C 0.203 3.797 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.032 0.968 38 H 0.269 0.731 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.038 16.287 -7.234 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.154 4.154 5 C -0.072 4.072 6 C -0.182 4.182 7 C 0.240 3.760 8 O -0.177 6.177 9 C 0.015 3.985 10 H 0.119 0.881 11 C -0.169 4.169 12 C 0.021 3.979 13 N -0.327 5.327 14 C -0.465 4.465 15 H 0.084 0.916 16 C -0.226 4.226 17 N -0.556 5.556 18 Si 0.895 3.105 19 H -0.210 1.210 20 H -0.219 1.219 21 H -0.220 1.220 22 C -0.001 4.001 23 N -0.339 5.339 24 C 0.237 3.763 25 O -0.260 6.260 26 N -0.274 5.274 27 C 0.077 3.923 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -14.878 14.840 -6.260 21.926 hybrid contribution -1.139 0.933 -0.614 1.595 sum -16.017 15.773 -6.874 23.507 Atomic orbital electron populations 1.20640 0.89587 1.03075 1.02695 1.19398 0.96931 0.90084 1.02018 1.20952 0.94316 0.97584 0.96458 1.20919 0.93963 0.98539 1.02029 1.20942 1.00820 0.90442 0.95003 1.18677 0.94427 0.93330 1.11793 1.20053 0.85149 0.87789 0.83019 1.86252 1.13069 1.34683 1.83736 1.23827 0.94151 0.81101 0.99400 0.88054 1.23055 0.93467 1.01615 0.98738 1.21558 0.98064 0.93356 0.84958 1.44447 1.16562 1.68400 1.03275 1.19751 1.16181 1.23917 0.86671 0.91595 1.25804 1.02048 0.92596 1.02120 1.70796 1.33732 1.33715 1.17368 0.83510 0.76354 0.75974 0.74621 1.20996 1.21939 1.22019 1.21595 0.89562 0.96445 0.92471 1.67402 1.09473 1.31437 1.25605 1.19735 0.82609 0.85395 0.88569 1.84708 1.74514 1.32635 1.34144 1.68314 1.39728 0.97230 1.22123 1.18305 0.88069 0.91700 0.94181 0.91033 0.91581 0.90357 0.84853 0.84921 0.84120 0.90312 0.90897 0.92118 0.95076 0.92007 0.94825 0.94902 0.72946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 9.82 36.01 0.35 -0.51 16 2 C -0.08 -0.87 5.88 -104.59 -0.62 -1.49 16 3 C -0.07 -0.60 9.59 -39.91 -0.38 -0.99 16 4 C -0.14 -1.18 9.96 -39.90 -0.40 -1.58 16 5 C -0.05 -0.58 9.60 -39.61 -0.38 -0.96 16 6 C -0.18 -2.46 5.75 -106.70 -0.61 -3.07 16 7 C 0.44 6.99 7.57 -16.11 -0.12 6.87 16 8 O -0.28 -4.61 9.23 -17.51 -0.16 -4.77 16 9 C 0.07 1.31 3.25 -24.89 -0.08 1.23 16 10 H 0.10 1.88 7.00 -51.93 -0.36 1.51 16 11 C -0.13 -2.34 6.81 -24.58 -0.17 -2.51 16 12 C 0.15 3.37 5.30 -2.53 -0.01 3.36 16 13 N -0.60 -15.57 3.29 -170.07 -0.56 -16.13 16 14 C -0.34 -9.74 10.02 -15.06 -0.15 -9.89 16 15 H 0.07 1.90 7.97 -52.48 -0.42 1.49 16 16 C -0.02 -0.69 5.09 -17.43 -0.09 -0.78 16 17 N -0.92 -27.67 12.93 55.49 0.72 -26.96 16 18 Si 1.07 25.47 30.00 -169.99 -5.10 20.37 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.13 2.81 7.03 -3.06 -0.02 2.79 16 23 N -0.60 -9.87 8.79 -14.40 -0.13 -10.00 16 24 C 0.54 8.22 8.65 -91.26 -0.79 7.43 16 25 O -0.46 -5.91 13.64 -17.98 -0.25 -6.15 16 26 N -0.54 -7.87 9.61 -12.79 -0.12 -7.99 16 27 C 0.20 2.75 6.59 -84.86 -0.56 2.19 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.08 0.73 7.60 -51.92 -0.39 0.34 16 31 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.14 1.46 7.72 -52.48 -0.40 1.05 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.50 7.95 -51.93 -0.41 1.09 16 37 H 0.03 0.76 6.81 -51.93 -0.35 0.40 16 38 H 0.27 8.12 6.06 -40.82 -0.25 7.87 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 41 H 0.41 2.98 9.06 45.56 0.41 3.39 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -34.40 344.71 -8.79 -43.19 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.35 Total: 1.15 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -4.03 Total: 2.10 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.09 Total: -61.08 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.41 Total: -10.92 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.10 Total: 20.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.40 -8.79 -43.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229406917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.729 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds