Wall clock time and date at job start Tue Mar 31 2020 10:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99968 * 2 1 4 4 H 1.48497 * 109.47389 * 274.99360 * 3 2 1 5 5 H 1.48497 * 109.47518 * 34.99639 * 3 2 1 6 6 H 1.48503 * 109.47099 * 154.99542 * 3 2 1 7 7 C 1.37875 * 119.99544 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99366 * 185.07297 * 7 2 1 9 9 C 1.50701 * 120.00578 * 5.07074 * 7 2 1 10 10 N 1.46896 * 109.47429 * 175.06918 * 9 7 2 11 11 C 1.46896 * 111.00238 * 198.87793 * 10 9 7 12 12 C 1.50698 * 109.47054 * 66.04770 * 11 10 9 13 13 C 1.38236 * 119.99842 * 269.72551 * 12 11 10 14 14 C 1.38235 * 119.99775 * 179.76131 * 13 12 11 15 15 C 1.38243 * 119.99941 * 0.51717 * 14 13 12 16 16 C 1.38238 * 119.99740 * 359.73979 * 15 14 13 17 17 C 1.38227 * 119.99983 * 359.97438 * 16 15 14 18 18 C 1.46905 * 110.99598 * 74.92570 * 10 9 7 19 19 C 1.50700 * 109.46784 * 199.54391 * 18 10 9 20 20 C 1.38302 * 119.98518 * 254.80122 * 19 18 10 21 21 C 1.38216 * 120.12512 * 180.02562 * 20 19 18 22 22 C 1.38230 * 120.09878 * 359.95146 * 21 20 19 23 23 C 1.38616 * 119.96316 * 0.07492 * 22 21 20 24 24 O 1.35963 * 120.06112 * 180.22807 * 23 22 21 25 25 C 1.38292 * 119.98657 * 74.82810 * 19 18 10 26 26 F 1.35104 * 120.04420 * 359.97438 * 25 19 18 27 27 H 0.96998 * 119.99799 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46718 * 55.07090 * 9 7 2 29 29 H 1.09000 * 109.47072 * 295.07557 * 9 7 2 30 30 H 1.08999 * 109.47409 * 186.04799 * 11 10 9 31 31 H 1.09009 * 109.46985 * 306.04868 * 11 10 9 32 32 H 1.07999 * 120.00300 * 0.02562 * 13 12 11 33 33 H 1.08002 * 120.00275 * 180.23253 * 14 13 12 34 34 H 1.08003 * 120.00011 * 179.71949 * 15 14 13 35 35 H 1.07998 * 119.99435 * 179.97438 * 16 15 14 36 36 H 1.08004 * 120.00123 * 179.97438 * 17 16 15 37 37 H 1.08994 * 109.47453 * 79.54596 * 18 10 9 38 38 H 1.08999 * 109.47377 * 319.54457 * 18 10 9 39 39 H 1.08000 * 119.93466 * 0.02562 * 20 19 18 40 40 H 1.08002 * 119.95242 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.02089 * 180.02562 * 22 21 20 42 42 H 0.96696 * 113.99610 * 269.72515 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5035 2.6199 0.8029 6 1 3.5956 1.4119 0.5918 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0832 9 6 1.2554 -2.4967 -0.1142 10 7 2.2138 -3.6060 -0.2088 11 6 1.5746 -4.8083 -0.7600 12 6 1.1775 -4.5547 -2.1914 13 6 -0.0741 -4.0445 -2.4814 14 6 -0.4366 -3.8072 -3.7941 15 6 0.4487 -4.0902 -4.8176 16 6 1.6983 -4.6053 -4.5278 17 6 2.0629 -4.8370 -3.2148 18 6 2.8249 -3.8865 1.0973 19 6 4.1038 -4.6584 0.8981 20 6 4.1454 -6.0117 1.1802 21 6 5.3169 -6.7223 0.9991 22 6 6.4508 -6.0828 0.5343 23 6 6.4136 -4.7264 0.2509 24 8 7.5265 -4.0963 -0.2107 25 6 5.2354 -4.0131 0.4339 26 9 5.1951 -2.6911 0.1583 27 1 -0.4850 0.8400 -0.0004 28 1 0.6308 -2.4791 -1.0073 29 1 0.6272 -2.6333 0.7659 30 1 2.2746 -5.6429 -0.7196 31 1 0.6876 -5.0493 -0.1741 32 1 -0.7672 -3.8273 -1.6821 33 1 -1.4130 -3.4051 -4.0205 34 1 0.1638 -3.9090 -5.8435 35 1 2.3897 -4.8267 -5.3274 36 1 3.0391 -5.2399 -2.9884 37 1 2.1355 -4.4755 1.7021 38 1 3.0428 -2.9472 1.6057 39 1 3.2607 -6.5141 1.5427 40 1 5.3464 -7.7790 1.2206 41 1 7.3654 -6.6394 0.3928 42 1 8.0886 -3.7303 0.4857 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233048577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:21 Heat of formation + Delta-G solvation = -51.027976 kcal Electronic energy + Delta-G solvation = -26293.741948 eV Core-core repulsion = 22538.460662 eV Total energy + Delta-G solvation = -3755.281286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.68974 -40.66435 -40.15822 -38.49753 -37.28119 -34.74606 -33.11321 -31.86617 -31.61337 -30.57404 -29.14563 -27.42313 -25.71555 -23.64801 -23.55086 -23.13482 -22.37864 -21.35118 -19.28554 -18.60101 -18.17382 -17.70659 -17.45749 -16.93742 -16.78989 -16.17038 -16.11749 -15.99542 -15.77551 -15.33317 -15.15992 -14.96368 -14.42476 -14.24284 -14.10239 -13.94590 -13.51817 -13.34813 -13.33370 -13.14692 -12.89812 -12.69977 -12.58573 -12.48886 -12.31027 -11.98648 -11.86891 -11.71643 -11.38413 -11.26063 -10.60196 -9.77707 -9.70054 -9.54668 -9.49675 -8.99946 -8.19034 -6.24839 0.15908 0.21292 0.53246 0.58485 1.34234 1.36192 1.47604 2.38495 2.53858 2.90041 3.07006 3.13112 3.49134 3.55604 3.80213 3.95657 3.96331 4.05926 4.21782 4.24201 4.29498 4.31344 4.43104 4.52949 4.58899 4.69734 4.76555 4.83368 4.91955 5.13259 5.14674 5.18217 5.22214 5.24919 5.28845 5.36127 5.47488 5.62968 5.66495 5.68971 5.81750 5.87211 6.10392 6.19953 6.36245 6.61820 6.75284 6.89872 7.42316 8.91120 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008712 B = 0.006093 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.135010 B = 4594.012437 C = 6535.797739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.203 3.797 10 N -0.531 5.531 11 C 0.095 3.905 12 C -0.083 4.083 13 C -0.122 4.122 14 C -0.133 4.133 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.111 4.111 18 C 0.102 3.898 19 C -0.102 4.102 20 C -0.097 4.097 21 C -0.101 4.101 22 C -0.115 4.115 23 C 0.058 3.942 24 O -0.503 6.503 25 C 0.061 3.939 26 F -0.149 7.149 27 H 0.262 0.738 28 H 0.031 0.969 29 H -0.039 1.039 30 H 0.093 0.907 31 H 0.032 0.968 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.152 0.848 40 H 0.173 0.827 41 H 0.165 0.835 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.259 -16.717 -0.975 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.078 3.922 10 N -0.254 5.254 11 C -0.032 4.032 12 C -0.083 4.083 13 C -0.141 4.141 14 C -0.151 4.151 15 C -0.145 4.145 16 C -0.145 4.145 17 C -0.130 4.130 18 C -0.026 4.026 19 C -0.104 4.104 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.133 4.133 23 C 0.013 3.987 24 O -0.315 6.315 25 C 0.041 3.959 26 F -0.128 7.128 27 H 0.071 0.929 28 H 0.049 0.951 29 H -0.022 1.022 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.120 0.880 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.141 0.859 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.170 0.830 40 H 0.190 0.810 41 H 0.183 0.817 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 9.263 -16.544 -1.827 19.049 hybrid contribution -0.488 1.872 1.113 2.232 sum 8.775 -14.673 -0.713 17.112 Atomic orbital electron populations 1.70065 1.07191 1.27469 1.52274 1.25704 0.95642 1.02369 0.95323 0.85609 0.78739 0.79588 0.78164 1.20291 1.20235 1.19659 1.21464 0.93630 0.91556 1.48537 0.92875 1.19539 0.89967 0.88246 0.94491 1.62035 1.34031 1.05579 1.23804 1.21078 0.97416 0.93313 0.91413 1.19860 0.93965 0.98934 0.95552 1.21130 0.96716 0.99125 0.97143 1.21333 1.00827 1.00284 0.92613 1.21414 0.94013 0.99150 0.99879 1.21416 0.97077 0.99514 0.96515 1.21112 0.98684 1.00334 0.92860 1.20795 0.92434 0.98492 0.90869 1.19979 0.93462 0.95779 1.01182 1.21278 1.00240 0.90980 0.99045 1.21441 0.90848 1.01766 0.97826 1.21594 1.01422 0.91743 0.98574 1.18680 0.85815 0.92418 1.01803 1.84827 1.34028 1.75338 1.37356 1.18508 0.96083 0.78189 1.03128 1.91486 1.97093 1.32808 1.91411 0.92871 0.95142 1.02167 0.88905 0.95034 0.87959 0.85094 0.83549 0.83654 0.85861 0.92852 0.92241 0.83035 0.80966 0.81733 0.73475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.29 -56.83 16 2 C 0.01 0.45 5.45 84.65 0.46 0.91 16 3 Si 0.95 47.20 29.54 68.60 2.03 49.22 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -13.29 7.11 99.48 0.71 -12.59 16 7 C -0.51 -30.66 8.50 25.60 0.22 -30.44 16 8 H 0.05 3.26 7.39 -2.91 -0.02 3.24 16 9 C 0.20 11.05 4.59 85.56 0.39 11.44 16 10 N -0.53 -23.56 4.34 -909.95 -3.95 -27.51 16 11 C 0.09 3.50 4.94 85.56 0.42 3.92 16 12 C -0.08 -3.12 4.94 -19.87 -0.10 -3.21 16 13 C -0.12 -4.72 7.86 22.27 0.18 -4.54 16 14 C -0.13 -4.44 10.05 22.27 0.22 -4.21 16 15 C -0.13 -3.69 10.05 22.27 0.22 -3.46 16 16 C -0.13 -3.74 10.05 22.27 0.22 -3.52 16 17 C -0.11 -3.76 9.70 22.27 0.22 -3.54 16 18 C 0.10 3.99 4.62 85.56 0.40 4.38 16 19 C -0.10 -3.30 4.81 -19.84 -0.10 -3.39 16 20 C -0.10 -2.17 9.00 22.28 0.20 -1.97 16 21 C -0.10 -1.69 10.04 22.26 0.22 -1.47 16 22 C -0.11 -2.20 9.99 22.36 0.22 -1.98 16 23 C 0.06 1.60 6.71 22.53 0.15 1.75 16 24 O -0.50 -13.01 13.37 -93.14 -1.25 -14.26 16 25 C 0.06 2.15 7.25 22.45 0.16 2.31 16 26 F -0.15 -6.64 16.27 44.97 0.73 -5.90 16 27 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.03 1.75 5.01 -2.39 -0.01 1.74 16 29 H -0.04 -2.29 8.01 -2.39 -0.02 -2.31 16 30 H 0.09 2.91 6.82 -2.39 -0.02 2.89 16 31 H 0.03 1.14 8.06 -2.38 -0.02 1.12 16 32 H 0.10 4.17 7.67 -2.91 -0.02 4.15 16 33 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 34 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.12 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.05 1.86 7.81 -2.39 -0.02 1.84 16 38 H 0.06 2.73 7.14 -2.39 -0.02 2.71 16 39 H 0.15 2.67 8.00 -2.91 -0.02 2.65 16 40 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 41 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.41 6.44 9.06 -74.06 -0.67 5.77 16 Total: -1.00 -76.05 358.32 1.94 -74.12 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.37 Total: 18.17 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 3.72 Total: -37.01 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -3.67 Total: -84.34 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.25 Total: -14.26 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.73 Total: -5.90 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -76.05 1.94 -74.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233048577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.088 kcal (2) G-P(sol) polarization free energy of solvation -76.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds