Wall clock time and date at job start Tue Mar 31 2020 11:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36231 * 119.94230 * 2 1 4 4 C 1.40943 * 119.88328 * 179.97438 * 3 2 1 5 5 C 1.40981 * 120.11146 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00069 * 333.65875 * 5 4 3 7 7 C 1.40025 * 120.00143 * 153.65777 * 5 4 3 8 8 N 1.30786 * 120.00178 * 161.40171 * 7 5 4 9 9 Si 1.86803 * 119.99585 * 341.40323 * 7 5 4 10 10 H 1.48497 * 109.47055 * 95.10318 * 9 7 5 11 11 H 1.48506 * 109.46563 * 215.09801 * 9 7 5 12 12 H 1.48493 * 109.47195 * 335.09674 * 9 7 5 13 13 C 1.40970 * 119.77435 * 359.97438 * 4 3 2 14 14 C 1.36197 * 119.88313 * 0.02562 * 13 4 3 15 15 C 1.39990 * 119.93910 * 179.71883 * 2 1 3 16 16 C 1.47852 * 119.88967 * 0.02562 * 15 2 1 17 17 C 1.39745 * 120.02255 * 235.87169 * 16 15 2 18 18 C 1.37626 * 119.97502 * 179.76539 * 17 16 15 19 19 C 1.39561 * 120.02747 * 0.48201 * 18 17 16 20 20 C 1.48223 * 119.98431 * 179.74623 * 19 18 17 21 21 C 1.39845 * 120.91896 * 179.74186 * 20 19 18 22 22 C 1.37960 * 119.01500 * 179.77259 * 21 20 19 23 23 N 1.31932 * 120.88782 * 0.52151 * 22 21 20 24 24 C 1.31923 * 122.02552 * 359.72330 * 23 22 21 25 25 C 1.37964 * 120.89016 * 0.02562 * 24 23 22 26 26 C 1.39573 * 120.03760 * 359.76971 * 19 18 17 27 27 C 1.37626 * 120.02050 * 359.97438 * 26 19 18 28 28 H 1.09002 * 109.47096 * 91.39597 * 1 2 3 29 29 H 1.08996 * 109.47429 * 331.39586 * 1 2 3 30 30 H 1.08995 * 109.47415 * 211.39534 * 1 2 3 31 31 H 1.08004 * 120.05994 * 359.95115 * 3 2 1 32 32 H 0.96998 * 119.99789 * 180.02562 * 8 7 5 33 33 H 1.08003 * 120.05720 * 180.02562 * 13 4 3 34 34 H 1.08001 * 119.94420 * 179.97438 * 14 13 4 35 35 H 1.07997 * 120.00886 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.98869 * 180.23135 * 18 17 16 37 37 H 1.08005 * 120.48911 * 0.02562 * 21 20 19 38 38 H 1.08001 * 119.55396 * 180.22595 * 22 21 20 39 39 H 1.08003 * 119.55933 * 179.97438 * 24 23 22 40 40 H 1.08006 * 120.49430 * 179.97438 * 25 24 23 41 41 H 1.07996 * 119.98374 * 179.97438 * 26 19 18 42 42 H 1.08007 * 120.00753 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1805 0.0000 4 6 3.5964 1.1790 0.0005 5 6 4.3049 2.3979 0.0000 6 1 3.8518 3.2857 -0.4158 7 6 5.5961 2.4574 0.5385 8 7 6.3892 3.4497 0.2276 9 14 6.1856 1.1193 1.7011 10 1 6.9379 0.0938 0.9346 11 1 7.0721 1.7154 2.7327 12 1 5.0157 0.4854 2.3602 13 6 4.2951 -0.0453 0.0016 14 6 3.6059 -1.2200 0.0016 15 6 2.2056 -1.2131 0.0060 16 6 1.4625 -2.4913 0.0117 17 6 1.6976 -3.4322 1.0177 18 6 1.0019 -4.6197 1.0248 19 6 0.0692 -4.8886 0.0221 20 6 -0.6755 -6.1702 0.0275 21 6 -1.6183 -6.4576 -0.9645 22 6 -2.2854 -7.6645 -0.9242 23 7 -2.0511 -8.5360 0.0382 24 6 -1.1739 -8.3022 0.9955 25 6 -0.4590 -7.1227 1.0284 26 6 -0.1625 -3.9517 -0.9861 27 6 0.5284 -2.7614 -0.9919 28 1 -0.3633 -0.0250 -1.0274 29 1 -0.3634 0.9022 0.4920 30 1 -0.3634 -0.8771 0.5353 31 1 1.6469 2.1158 -0.0008 32 1 7.2838 3.4907 0.6004 33 1 5.3751 -0.0517 0.0025 34 1 4.1403 -2.1586 0.0020 35 1 2.4225 -3.2262 1.7913 36 1 1.1807 -5.3455 1.8044 37 1 -1.8182 -5.7470 -1.7529 38 1 -3.0127 -7.8970 -1.6880 39 1 -1.0139 -9.0437 1.7642 40 1 0.2573 -6.9378 1.8153 41 1 -0.8842 -4.1608 -1.7618 42 1 0.3493 -2.0367 -1.7725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236043447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:49 Heat of formation + Delta-G solvation = 65.610882 kcal Electronic energy + Delta-G solvation = -23814.848450 eV Core-core repulsion = 20495.394230 eV Total energy + Delta-G solvation = -3319.454221 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.41234 -39.14335 -37.70876 -34.43095 -33.41052 -32.02575 -31.66208 -31.00374 -30.51723 -28.82059 -26.35727 -25.51756 -24.01856 -23.42095 -21.85434 -21.32770 -20.68442 -20.09241 -17.73266 -17.15503 -16.45523 -16.29858 -15.92605 -15.26683 -14.64292 -14.60891 -14.23284 -14.08596 -14.00208 -13.74537 -13.64935 -13.27586 -13.05142 -12.72474 -12.50164 -12.42702 -12.30831 -11.96985 -11.77619 -11.55034 -11.18562 -10.87679 -10.82780 -10.59401 -10.42920 -10.11544 -9.92182 -9.66969 -9.65780 -9.36164 -9.23240 -8.80616 -8.27792 -7.76479 -7.40205 -7.15262 -4.61953 0.53534 0.96858 1.60921 1.84169 2.50409 2.63292 3.00426 3.13212 3.21465 3.63525 3.84489 4.08329 4.26493 4.33540 4.42007 4.55581 4.85166 4.94323 5.02115 5.11103 5.27875 5.37602 5.42917 5.59392 5.63167 5.63707 5.71007 5.76198 5.78287 6.04655 6.06735 6.11551 6.18333 6.24259 6.34644 6.43327 6.49579 6.61816 6.66986 6.68435 6.76888 6.91835 7.04183 7.11930 7.36714 7.55149 7.68608 7.75921 7.79820 7.97674 8.17800 8.52178 8.62774 9.85379 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.029583 B = 0.002646 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.251586 B =10580.095492 C =11230.406352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.025 4.025 3 C -0.214 4.214 4 C 0.100 3.900 5 C -0.430 4.430 6 H 0.093 0.907 7 C 0.081 3.919 8 N -0.794 5.794 9 Si 0.919 3.081 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.242 1.242 13 C -0.250 4.250 14 C -0.045 4.045 15 C -0.216 4.216 16 C 0.035 3.965 17 C -0.128 4.128 18 C -0.094 4.094 19 C -0.096 4.096 20 C 0.021 3.979 21 C -0.175 4.175 22 C 0.101 3.899 23 N -0.498 5.498 24 C 0.101 3.899 25 C -0.175 4.175 26 C -0.095 4.095 27 C -0.124 4.124 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.289 0.711 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.136 0.864 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.136 0.864 41 H 0.119 0.881 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.593 -15.345 0.687 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.025 4.025 3 C -0.233 4.233 4 C 0.097 3.903 5 C -0.457 4.457 6 H 0.111 0.889 7 C -0.140 4.140 8 N -0.416 5.416 9 Si 0.745 3.255 10 H -0.196 1.196 11 H -0.219 1.219 12 H -0.165 1.165 13 C -0.269 4.269 14 C -0.063 4.063 15 C -0.217 4.217 16 C 0.035 3.965 17 C -0.146 4.146 18 C -0.112 4.112 19 C -0.096 4.096 20 C 0.013 3.987 21 C -0.195 4.195 22 C -0.055 4.055 23 N -0.208 5.208 24 C -0.055 4.055 25 C -0.195 4.195 26 C -0.113 4.113 27 C -0.142 4.142 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.154 0.846 41 H 0.137 0.863 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.827 -15.928 0.687 19.272 hybrid contribution 1.057 0.465 0.411 1.226 sum -9.771 -15.463 1.098 18.324 Atomic orbital electron populations 1.20802 0.93371 1.01450 1.01043 1.19151 0.93788 0.92549 0.97015 1.20515 0.93702 0.95777 1.13307 1.17763 0.92017 0.92522 0.88010 1.19601 0.97492 0.96526 1.32128 0.88936 1.26320 0.95480 0.96478 0.95716 1.69673 1.07508 1.30032 1.34434 0.86215 0.79673 0.79928 0.79639 1.19569 1.21907 1.16467 1.20644 0.98104 0.92922 1.15268 1.20310 0.92627 0.96576 0.96775 1.17861 0.92238 0.90028 1.21598 1.19072 0.92638 0.93034 0.91793 1.21312 1.00624 0.93696 0.99014 1.21060 0.95608 0.97006 0.97531 1.18535 0.99648 0.93428 0.97950 1.19263 0.93191 0.92974 0.93226 1.22247 0.98051 0.99035 1.00136 1.22649 0.97427 0.89672 0.95801 1.67625 1.16839 1.33290 1.03006 1.22647 0.91531 0.95464 0.95902 1.22253 1.02180 0.95047 1.00014 1.21065 0.99214 0.93552 0.97499 1.21307 0.97367 0.96659 0.98864 0.92245 0.92551 0.92472 0.88058 0.90057 0.88214 0.88809 0.85885 0.86286 0.84619 0.82846 0.82853 0.84639 0.86266 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 8.59 36.00 0.31 -1.46 16 2 C -0.02 -0.49 5.84 -104.69 -0.61 -1.11 16 3 C -0.21 -4.76 9.36 -39.28 -0.37 -5.13 16 4 C 0.10 2.44 5.20 -106.80 -0.55 1.89 16 5 C -0.43 -11.13 9.56 -37.87 -0.36 -11.50 16 6 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 7 C 0.08 2.04 5.42 -17.33 -0.09 1.94 16 8 N -0.79 -20.21 13.93 55.55 0.77 -19.44 16 9 Si 0.92 20.06 24.42 -169.99 -4.15 15.90 16 10 H -0.27 -5.72 6.65 56.52 0.38 -5.34 16 11 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.24 -5.40 6.78 56.52 0.38 -5.02 16 13 C -0.25 -5.82 7.08 -39.28 -0.28 -6.09 16 14 C -0.04 -0.93 9.54 -39.64 -0.38 -1.31 16 15 C -0.22 -4.25 5.42 -104.64 -0.57 -4.82 16 16 C 0.03 0.58 4.47 -104.84 -0.47 0.11 16 17 C -0.13 -1.93 9.60 -39.24 -0.38 -2.31 16 18 C -0.09 -1.22 9.43 -39.31 -0.37 -1.59 16 19 C -0.10 -1.22 5.88 -104.80 -0.62 -1.84 16 20 C 0.02 0.25 5.91 -104.59 -0.62 -0.37 16 21 C -0.17 -1.78 9.50 -39.08 -0.37 -2.16 16 22 C 0.10 1.00 11.17 -17.61 -0.20 0.81 16 23 N -0.50 -5.68 10.35 -13.35 -0.14 -5.82 16 24 C 0.10 1.01 11.17 -17.61 -0.20 0.81 16 25 C -0.18 -1.80 9.50 -39.08 -0.37 -2.17 16 26 C -0.10 -1.21 9.43 -39.31 -0.37 -1.58 16 27 C -0.12 -1.82 8.15 -39.24 -0.32 -2.14 16 28 H 0.06 0.86 7.76 -51.93 -0.40 0.46 16 29 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.06 0.88 6.72 -51.93 -0.35 0.53 16 31 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 32 H 0.29 6.62 8.29 -40.82 -0.34 6.28 16 33 H 0.10 2.31 4.25 -52.48 -0.22 2.09 16 34 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.12 1.25 6.28 -52.48 -0.33 0.92 16 37 H 0.14 1.12 6.33 -52.48 -0.33 0.79 16 38 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.14 1.14 6.33 -52.48 -0.33 0.81 16 41 H 0.12 1.22 6.28 -52.49 -0.33 0.89 16 42 H 0.12 1.75 7.45 -52.48 -0.39 1.36 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -27.50 345.56 -10.31 -37.81 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.82 Total: 6.35 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: -7.18 Total: -40.01 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.64 Total: -25.25 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.15 Total: 15.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.50 -10.31 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236043447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.421 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds