Wall clock time and date at job start Tue Mar 31 2020 11:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36231 * 119.94230 * 2 1 4 4 C 1.40943 * 119.88328 * 179.97438 * 3 2 1 5 5 C 1.40981 * 120.11146 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00069 * 333.65875 * 5 4 3 7 7 C 1.40025 * 120.00143 * 153.65777 * 5 4 3 8 8 N 1.30786 * 120.00178 * 161.40171 * 7 5 4 9 9 Si 1.86803 * 119.99585 * 341.40323 * 7 5 4 10 10 H 1.48497 * 109.47055 * 95.10318 * 9 7 5 11 11 H 1.48506 * 109.46563 * 215.09801 * 9 7 5 12 12 H 1.48493 * 109.47195 * 335.09674 * 9 7 5 13 13 C 1.40970 * 119.77435 * 359.97438 * 4 3 2 14 14 C 1.36197 * 119.88313 * 0.02562 * 13 4 3 15 15 C 1.39990 * 119.93910 * 179.71883 * 2 1 3 16 16 C 1.47852 * 119.88967 * 0.02562 * 15 2 1 17 17 C 1.39745 * 120.02255 * 235.87169 * 16 15 2 18 18 C 1.37626 * 119.97502 * 179.76539 * 17 16 15 19 19 C 1.39561 * 120.02747 * 0.48201 * 18 17 16 20 20 C 1.48223 * 119.98431 * 179.74623 * 19 18 17 21 21 C 1.39845 * 120.91896 * 179.74186 * 20 19 18 22 22 C 1.37960 * 119.01500 * 179.77259 * 21 20 19 23 23 N 1.31932 * 120.88782 * 0.52151 * 22 21 20 24 24 C 1.31923 * 122.02552 * 359.72330 * 23 22 21 25 25 C 1.37964 * 120.89016 * 0.02562 * 24 23 22 26 26 C 1.39573 * 120.03760 * 359.76971 * 19 18 17 27 27 C 1.37626 * 120.02050 * 359.97438 * 26 19 18 28 28 H 1.09002 * 109.47096 * 91.39597 * 1 2 3 29 29 H 1.08996 * 109.47429 * 331.39586 * 1 2 3 30 30 H 1.08995 * 109.47415 * 211.39534 * 1 2 3 31 31 H 1.08004 * 120.05994 * 359.95115 * 3 2 1 32 32 H 0.96998 * 119.99789 * 180.02562 * 8 7 5 33 33 H 1.08003 * 120.05720 * 180.02562 * 13 4 3 34 34 H 1.08001 * 119.94420 * 179.97438 * 14 13 4 35 35 H 1.07997 * 120.00886 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.98869 * 180.23135 * 18 17 16 37 37 H 1.08005 * 120.48911 * 0.02562 * 21 20 19 38 38 H 1.08001 * 119.55396 * 180.22595 * 22 21 20 39 39 H 1.08003 * 119.55933 * 179.97438 * 24 23 22 40 40 H 1.08006 * 120.49430 * 179.97438 * 25 24 23 41 41 H 1.07996 * 119.98374 * 179.97438 * 26 19 18 42 42 H 1.08007 * 120.00753 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1805 0.0000 4 6 3.5964 1.1790 0.0005 5 6 4.3049 2.3979 0.0000 6 1 3.8518 3.2857 -0.4158 7 6 5.5961 2.4574 0.5385 8 7 6.3892 3.4497 0.2276 9 14 6.1856 1.1193 1.7011 10 1 6.9379 0.0938 0.9346 11 1 7.0721 1.7154 2.7327 12 1 5.0157 0.4854 2.3602 13 6 4.2951 -0.0453 0.0016 14 6 3.6059 -1.2200 0.0016 15 6 2.2056 -1.2131 0.0060 16 6 1.4625 -2.4913 0.0117 17 6 1.6976 -3.4322 1.0177 18 6 1.0019 -4.6197 1.0248 19 6 0.0692 -4.8886 0.0221 20 6 -0.6755 -6.1702 0.0275 21 6 -1.6183 -6.4576 -0.9645 22 6 -2.2854 -7.6645 -0.9242 23 7 -2.0511 -8.5360 0.0382 24 6 -1.1739 -8.3022 0.9955 25 6 -0.4590 -7.1227 1.0284 26 6 -0.1625 -3.9517 -0.9861 27 6 0.5284 -2.7614 -0.9919 28 1 -0.3633 -0.0250 -1.0274 29 1 -0.3634 0.9022 0.4920 30 1 -0.3634 -0.8771 0.5353 31 1 1.6469 2.1158 -0.0008 32 1 7.2838 3.4907 0.6004 33 1 5.3751 -0.0517 0.0025 34 1 4.1403 -2.1586 0.0020 35 1 2.4225 -3.2262 1.7913 36 1 1.1807 -5.3455 1.8044 37 1 -1.8182 -5.7470 -1.7529 38 1 -3.0127 -7.8970 -1.6880 39 1 -1.0139 -9.0437 1.7642 40 1 0.2573 -6.9378 1.8153 41 1 -0.8842 -4.1608 -1.7618 42 1 0.3493 -2.0367 -1.7725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236043447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:48 Heat of formation + Delta-G solvation = 53.870179 kcal Electronic energy + Delta-G solvation = -23815.357565 eV Core-core repulsion = 20495.394230 eV Total energy + Delta-G solvation = -3319.963336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.26828 -40.42681 -39.09734 -36.00865 -34.65407 -33.53727 -32.55983 -32.38268 -31.53196 -30.12607 -27.90592 -26.95443 -24.85908 -24.56644 -22.98789 -22.55286 -22.24261 -21.51915 -19.00322 -18.60934 -17.80589 -17.15135 -17.03214 -16.63088 -16.05552 -15.58592 -15.43591 -15.31266 -15.05452 -14.91765 -14.80664 -14.71312 -14.36297 -14.00976 -13.92084 -13.78784 -13.59812 -13.32993 -12.99950 -12.79360 -12.62780 -12.51860 -12.33768 -11.99677 -11.68189 -11.61575 -11.46043 -11.13517 -10.96120 -10.43254 -10.08027 -9.85787 -9.66450 -9.39280 -8.99103 -8.87168 -6.51526 -0.41118 0.24674 0.54499 0.58867 0.89445 1.06737 1.23967 1.39637 1.46445 2.07710 2.49561 2.77382 3.13679 3.46707 3.51142 3.62754 3.77424 4.00280 4.07217 4.15994 4.18764 4.22209 4.25101 4.28225 4.49466 4.58067 4.66872 4.67499 4.73541 4.84844 4.87617 4.91708 4.99437 5.01638 5.09909 5.12779 5.18024 5.21623 5.32266 5.45660 5.63002 5.68569 5.72293 5.79506 5.79609 5.90265 6.05395 6.10618 6.20026 6.36700 6.69724 6.79735 7.06288 8.08469 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.029583 B = 0.002646 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.251586 B =10580.095492 C =11230.406352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.031 4.031 3 C -0.228 4.228 4 C 0.080 3.920 5 C -0.474 4.474 6 H 0.059 0.941 7 C 0.047 3.953 8 N -0.838 5.838 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.252 1.252 13 C -0.263 4.263 14 C -0.057 4.057 15 C -0.189 4.189 16 C -0.001 4.001 17 C -0.131 4.131 18 C -0.095 4.095 19 C -0.082 4.082 20 C -0.002 4.002 21 C -0.173 4.173 22 C 0.093 3.907 23 N -0.519 5.519 24 C 0.093 3.907 25 C -0.175 4.175 26 C -0.095 4.095 27 C -0.121 4.121 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.296 0.704 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.179 0.821 39 H 0.178 0.822 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.970 -19.568 0.995 23.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.031 4.031 3 C -0.247 4.247 4 C 0.078 3.922 5 C -0.503 4.503 6 H 0.077 0.923 7 C -0.169 4.169 8 N -0.463 5.463 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.176 1.176 13 C -0.282 4.282 14 C -0.075 4.075 15 C -0.190 4.190 16 C -0.001 4.001 17 C -0.149 4.149 18 C -0.113 4.113 19 C -0.082 4.082 20 C -0.010 4.010 21 C -0.193 4.193 22 C -0.063 4.063 23 N -0.229 5.229 24 C -0.063 4.063 25 C -0.194 4.194 26 C -0.113 4.113 27 C -0.139 4.139 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.173 0.827 38 H 0.196 0.804 39 H 0.195 0.805 40 H 0.170 0.830 41 H 0.165 0.835 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.211 -20.154 0.990 24.118 hybrid contribution 1.419 1.365 0.254 1.985 sum -11.792 -18.789 1.243 22.218 Atomic orbital electron populations 1.20807 0.90225 1.02385 1.02595 1.19605 0.96194 0.91731 0.95562 1.20710 0.93238 0.97052 1.13732 1.17924 0.93070 0.92458 0.88793 1.19520 0.98916 0.96294 1.35564 0.92297 1.26915 0.95250 0.98242 0.96486 1.69697 1.08304 1.31884 1.36446 0.85434 0.78964 0.77976 0.78219 1.18506 1.20473 1.17607 1.20740 0.98191 0.93331 1.15916 1.20632 0.93597 0.96662 0.96579 1.18318 0.92096 0.91686 1.16878 1.18940 0.94605 0.92357 0.94220 1.21342 1.00849 0.94056 0.98660 1.21298 0.95066 0.96689 0.98289 1.18790 0.98580 0.93710 0.97137 1.19349 0.94238 0.92860 0.94579 1.22490 0.97268 0.99417 1.00099 1.23094 0.97750 0.89417 0.96018 1.67670 1.17424 1.34092 1.03700 1.23075 0.91043 0.96016 0.96158 1.22487 1.02188 0.94754 1.00014 1.21330 0.99243 0.92574 0.98143 1.21330 0.96722 0.97563 0.98328 0.90248 0.91766 0.91357 0.88070 0.89299 0.88620 0.86548 0.85990 0.83746 0.82747 0.80444 0.80535 0.82965 0.83465 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.08 8.59 71.23 0.61 -2.47 16 2 C -0.03 -1.20 5.84 -19.91 -0.12 -1.32 16 3 C -0.23 -10.42 9.36 22.46 0.21 -10.21 16 4 C 0.08 4.08 5.20 -21.28 -0.11 3.97 16 5 C -0.47 -26.42 9.56 23.38 0.22 -26.20 16 6 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 7 C 0.05 2.51 5.42 85.28 0.46 2.97 16 8 N -0.84 -45.29 13.93 21.84 0.30 -44.99 16 9 Si 0.97 42.64 24.42 68.60 1.68 44.31 16 10 H -0.26 -10.82 6.65 99.48 0.66 -10.15 16 11 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.25 -11.35 6.78 99.48 0.67 -10.67 16 13 C -0.26 -12.41 7.08 22.46 0.16 -12.25 16 14 C -0.06 -2.33 9.54 22.23 0.21 -2.11 16 15 C -0.19 -7.15 5.42 -19.87 -0.11 -7.26 16 16 C 0.00 -0.03 4.47 -20.00 -0.09 -0.12 16 17 C -0.13 -3.56 9.60 22.49 0.22 -3.34 16 18 C -0.10 -2.11 9.43 22.44 0.21 -1.90 16 19 C -0.08 -1.76 5.88 -19.98 -0.12 -1.87 16 20 C 0.00 -0.04 5.91 -19.84 -0.12 -0.16 16 21 C -0.17 -2.82 9.50 22.59 0.21 -2.60 16 22 C 0.09 1.52 11.17 84.61 0.95 2.46 16 23 N -0.52 -10.15 10.35 -196.14 -2.03 -12.18 16 24 C 0.09 1.54 11.17 84.61 0.95 2.48 16 25 C -0.17 -2.91 9.50 22.60 0.21 -2.70 16 26 C -0.09 -2.02 9.43 22.45 0.21 -1.81 16 27 C -0.12 -3.15 8.15 22.49 0.18 -2.97 16 28 H 0.08 2.07 7.76 -2.39 -0.02 2.05 16 29 H 0.06 1.81 8.07 -2.39 -0.02 1.79 16 30 H 0.07 1.90 6.72 -2.39 -0.02 1.88 16 31 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 32 H 0.30 14.31 8.29 -92.71 -0.77 13.54 16 33 H 0.10 4.52 4.25 -2.91 -0.01 4.51 16 34 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 35 H 0.12 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.14 2.40 6.28 -2.91 -0.02 2.38 16 37 H 0.15 1.82 6.33 -2.91 -0.02 1.80 16 38 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.15 1.91 6.33 -2.91 -0.02 1.89 16 41 H 0.15 2.27 6.28 -2.91 -0.02 2.25 16 42 H 0.13 3.18 7.45 -2.91 -0.02 3.16 16 Total: -1.00 -62.75 345.56 5.28 -57.46 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.97 Total: 22.79 kcal Atomic # 6 Polarization: -71.75 SS G_CDS: 4.36 Total: -67.39 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -1.73 Total: -57.17 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.68 Total: 44.31 kcal Total: -62.75 5.28 -57.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236043447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.334 kcal (2) G-P(sol) polarization free energy of solvation -62.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds