Wall clock time and date at job start Tue Mar 31 2020 10:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99490 * 2 1 4 4 H 1.48502 * 109.47082 * 239.99827 * 3 2 1 5 5 H 1.48495 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47322 * 120.00147 * 3 2 1 7 7 C 1.37877 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99794 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46590 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99476 * 193.95114 * 10 9 7 12 12 C 1.50701 * 109.47176 * 66.04905 * 11 10 9 13 13 C 1.38241 * 119.99862 * 269.72189 * 12 11 10 14 14 C 1.38228 * 120.00132 * 179.76181 * 13 12 11 15 15 C 1.38240 * 119.99947 * 0.51161 * 14 13 12 16 16 C 1.38237 * 119.99644 * 359.74603 * 15 14 13 17 17 C 1.38232 * 120.00178 * 90.00036 * 12 11 10 18 18 C 1.46903 * 111.00420 * 70.00037 * 10 9 7 19 19 C 1.50699 * 109.46773 * 293.95373 * 18 10 9 20 20 C 1.38263 * 119.95465 * 90.00004 * 19 18 10 21 21 C 1.38254 * 120.12303 * 180.02562 * 20 19 18 22 22 C 1.38326 * 120.03451 * 0.02562 * 21 20 19 23 23 F 1.35098 * 120.05006 * 179.97438 * 22 21 20 24 24 C 1.38915 * 119.90531 * 359.97200 * 22 21 20 25 25 O 1.35948 * 120.06668 * 179.72529 * 24 22 21 26 26 C 1.38177 * 119.94951 * 269.99417 * 19 18 10 27 27 H 0.96998 * 120.00129 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47266 * 60.00058 * 9 7 2 29 29 H 1.08996 * 109.46710 * 299.99446 * 9 7 2 30 30 H 1.08998 * 109.47047 * 186.04599 * 11 10 9 31 31 H 1.08997 * 109.47504 * 306.04286 * 11 10 9 32 32 H 1.08002 * 119.99601 * 0.02562 * 13 12 11 33 33 H 1.08002 * 120.00383 * 180.23378 * 14 13 12 34 34 H 1.07995 * 120.00146 * 179.71468 * 15 14 13 35 35 H 1.08001 * 119.99898 * 179.97438 * 16 15 14 36 36 H 1.07997 * 120.00230 * 359.97438 * 17 12 11 37 37 H 1.08994 * 109.47074 * 173.94935 * 18 10 9 38 38 H 1.09009 * 109.46731 * 53.94653 * 18 10 9 39 39 H 1.07995 * 119.93465 * 0.02562 * 20 19 18 40 40 H 1.08004 * 119.98029 * 179.97438 * 21 20 19 41 41 H 0.96696 * 113.99962 * 89.99700 * 25 24 22 42 42 H 1.08008 * 120.01548 * 0.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2059 -3.6156 0.0005 11 6 1.5364 -4.8807 -0.3301 12 6 1.0430 -4.8309 -1.7532 13 6 -0.2275 -4.3606 -2.0282 14 6 -0.6784 -4.3103 -3.3339 15 6 0.1374 -4.7402 -4.3638 16 6 1.4059 -5.2156 -4.0883 17 6 1.8587 -5.2610 -2.7830 18 6 2.9046 -3.7109 1.2892 19 6 3.7746 -2.4953 1.4800 20 6 3.2635 -1.3714 2.1025 21 6 4.0583 -0.2541 2.2789 22 6 5.3674 -0.2581 1.8321 23 9 6.1443 0.8338 2.0038 24 6 5.8823 -1.3865 1.2065 25 8 7.1667 -1.3921 0.7611 26 6 5.0819 -2.5054 1.0327 27 1 -0.4850 0.8400 -0.0004 28 1 0.6249 -2.5571 -0.8897 29 1 0.6243 -2.5567 0.8903 30 1 2.2412 -5.7047 -0.2186 31 1 0.6919 -5.0314 0.3422 32 1 -0.8663 -4.0284 -1.2231 33 1 -1.6696 -3.9393 -3.5491 34 1 -0.2166 -4.7053 -5.3835 35 1 2.0430 -5.5519 -4.8929 36 1 2.8497 -5.6322 -2.5679 37 1 3.5249 -4.6071 1.3008 38 1 2.1733 -3.7646 2.0959 39 1 2.2415 -1.3665 2.4516 40 1 3.6566 0.6227 2.7651 41 1 7.8081 -1.7040 1.4141 42 1 5.4797 -3.3839 0.5463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236707012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:31 Heat of formation + Delta-G solvation = -18.089238 kcal Electronic energy + Delta-G solvation = -26463.637709 eV Core-core repulsion = 22709.784754 eV Total energy + Delta-G solvation = -3753.852955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.30398 -39.42697 -38.83777 -37.11219 -35.61606 -32.80244 -31.75110 -30.51365 -30.04356 -29.12476 -27.59001 -25.68976 -23.73034 -22.42141 -22.26003 -21.78090 -20.69465 -19.92077 -17.79351 -16.80070 -16.66114 -16.35410 -16.09874 -15.33266 -15.18750 -14.83442 -14.61563 -14.52081 -14.28272 -13.67152 -13.47003 -13.34066 -13.15919 -13.01191 -12.79437 -12.27524 -12.12510 -12.08693 -11.70771 -11.56122 -11.19587 -11.14666 -10.81812 -10.68613 -10.63459 -10.55725 -10.34425 -10.03247 -9.69851 -9.28241 -8.57787 -8.44435 -8.31336 -8.16675 -7.53987 -7.39356 -6.16274 -4.04401 1.68242 1.82175 1.83475 1.89997 3.30346 3.35014 3.43910 4.02868 4.23754 4.38247 4.51515 4.92429 5.09557 5.20359 5.24422 5.27356 5.36110 5.39097 5.49230 5.52875 5.72971 5.78411 5.88751 5.91607 5.99363 6.01258 6.05713 6.14754 6.40434 6.45886 6.46824 6.61766 6.72828 6.84328 6.89716 6.93931 7.05447 7.13381 7.17218 7.27637 7.39003 7.42029 7.72372 7.97949 8.04678 8.05087 8.40663 8.94262 9.47525 10.92431 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.005026 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.740930 B = 5569.395817 C = 6602.557045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.871 3.129 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.254 1.254 7 C -0.491 4.491 8 H 0.081 0.919 9 C 0.181 3.819 10 N -0.528 5.528 11 C 0.092 3.908 12 C -0.063 4.063 13 C -0.099 4.099 14 C -0.122 4.122 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.101 4.101 18 C 0.108 3.892 19 C -0.061 4.061 20 C 0.002 3.998 21 C -0.176 4.176 22 C 0.072 3.928 23 F -0.148 7.148 24 C 0.030 3.970 25 O -0.491 6.491 26 C -0.102 4.102 27 H 0.263 0.737 28 H 0.044 0.956 29 H -0.008 1.008 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.375 0.625 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -9.865 1.590 10.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.698 3.302 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.179 1.179 7 C -0.528 4.528 8 H 0.099 0.901 9 C 0.056 3.944 10 N -0.253 5.253 11 C -0.035 4.035 12 C -0.063 4.063 13 C -0.117 4.117 14 C -0.140 4.140 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.120 4.120 18 C -0.020 4.020 19 C -0.062 4.062 20 C -0.017 4.017 21 C -0.196 4.196 22 C 0.053 3.947 23 F -0.127 7.127 24 C -0.016 4.016 25 O -0.299 6.299 26 C -0.121 4.121 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.009 0.991 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.229 0.771 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.969 -9.395 0.709 10.224 hybrid contribution 0.038 1.227 0.685 1.406 sum 4.007 -8.168 1.394 9.204 Atomic orbital electron populations 1.69946 1.06076 1.27115 1.49333 1.24917 0.94640 0.99108 0.95396 0.87004 0.79915 0.83041 0.80209 1.20183 1.21621 1.17911 1.21657 0.94548 0.89655 1.46900 0.90141 1.19984 0.90240 0.87309 0.96847 1.62250 1.31111 1.03121 1.28793 1.20985 0.96982 0.93551 0.92015 1.19729 0.93597 0.97612 0.95375 1.21103 0.95936 0.97862 0.96814 1.21057 0.99806 1.00195 0.92973 1.21027 0.94756 1.00241 0.98629 1.21026 0.96093 1.01066 0.96469 1.20926 0.98879 0.99855 0.92299 1.20811 0.95487 0.94519 0.91158 1.19332 0.92978 0.96345 0.97578 1.20699 0.97695 0.90547 0.92729 1.20869 0.92189 1.00368 1.06132 1.18057 0.90397 0.83996 1.02296 1.91405 1.74796 1.52649 1.93803 1.18127 0.86038 0.93544 1.03843 1.84928 1.14430 1.88631 1.41864 1.20862 0.94049 0.97175 1.00006 0.92744 0.93777 0.99072 0.91168 0.94896 0.86183 0.86579 0.86839 0.86733 0.86442 0.91568 0.94671 0.84960 0.85439 0.77142 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 13.29 55.43 0.74 -23.90 16 2 C 0.06 1.66 5.44 -17.82 -0.10 1.56 16 3 Si 0.87 21.21 28.30 -169.99 -4.81 16.40 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.25 -5.83 4.86 56.52 0.27 -5.55 16 7 C -0.49 -12.48 5.37 -34.44 -0.19 -12.67 16 8 H 0.08 2.10 4.72 -52.49 -0.25 1.85 16 9 C 0.18 4.24 4.48 -4.97 -0.02 4.22 16 10 N -0.53 -10.25 4.55 -238.96 -1.09 -11.34 16 11 C 0.09 1.51 5.12 -4.97 -0.03 1.49 16 12 C -0.06 -1.06 4.92 -104.62 -0.51 -1.58 16 13 C -0.10 -1.70 7.86 -39.58 -0.31 -2.01 16 14 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 15 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 16 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 17 C -0.10 -1.58 9.70 -39.59 -0.38 -1.96 16 18 C 0.11 1.83 5.11 -4.97 -0.03 1.80 16 19 C -0.06 -1.12 3.46 -104.64 -0.36 -1.48 16 20 C 0.00 0.05 5.87 -39.57 -0.23 -0.19 16 21 C -0.18 -3.45 7.46 -39.54 -0.30 -3.75 16 22 C 0.07 1.43 7.31 -39.30 -0.29 1.14 16 23 F -0.15 -2.94 17.11 2.25 0.04 -2.91 16 24 C 0.03 0.55 6.71 -39.17 -0.26 0.29 16 25 O -0.49 -8.13 13.37 -19.58 -0.26 -8.39 16 26 C -0.10 -1.79 9.44 -39.45 -0.37 -2.16 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.04 1.12 5.26 -51.93 -0.27 0.85 16 29 H -0.01 -0.21 7.99 -51.93 -0.41 -0.62 16 30 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 31 H 0.03 0.53 8.06 -51.93 -0.42 0.11 16 32 H 0.12 2.11 7.79 -52.49 -0.41 1.70 16 33 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 38 H 0.04 0.58 7.96 -51.92 -0.41 0.17 16 39 H 0.13 2.65 7.68 -52.49 -0.40 2.24 16 40 H 0.13 2.43 7.12 -52.48 -0.37 2.05 16 41 H 0.38 4.10 9.06 45.56 0.41 4.51 16 42 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -29.97 344.05 -9.50 -39.47 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.73 Total: 7.62 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -4.57 Total: -22.15 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.35 Total: -35.24 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.26 Total: -8.39 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.81 Total: 16.40 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.97 -9.50 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236707012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.384 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds