Wall clock time and date at job start Tue Mar 31 2020 10:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99490 * 2 1 4 4 H 1.48502 * 109.47082 * 239.99827 * 3 2 1 5 5 H 1.48495 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47322 * 120.00147 * 3 2 1 7 7 C 1.37877 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99794 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46590 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99476 * 193.95114 * 10 9 7 12 12 C 1.50701 * 109.47176 * 66.04905 * 11 10 9 13 13 C 1.38241 * 119.99862 * 269.72189 * 12 11 10 14 14 C 1.38228 * 120.00132 * 179.76181 * 13 12 11 15 15 C 1.38240 * 119.99947 * 0.51161 * 14 13 12 16 16 C 1.38237 * 119.99644 * 359.74603 * 15 14 13 17 17 C 1.38232 * 120.00178 * 90.00036 * 12 11 10 18 18 C 1.46903 * 111.00420 * 70.00037 * 10 9 7 19 19 C 1.50699 * 109.46773 * 293.95373 * 18 10 9 20 20 C 1.38263 * 119.95465 * 90.00004 * 19 18 10 21 21 C 1.38254 * 120.12303 * 180.02562 * 20 19 18 22 22 C 1.38326 * 120.03451 * 0.02562 * 21 20 19 23 23 F 1.35098 * 120.05006 * 179.97438 * 22 21 20 24 24 C 1.38915 * 119.90531 * 359.97200 * 22 21 20 25 25 O 1.35948 * 120.06668 * 179.72529 * 24 22 21 26 26 C 1.38177 * 119.94951 * 269.99417 * 19 18 10 27 27 H 0.96998 * 120.00129 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47266 * 60.00058 * 9 7 2 29 29 H 1.08996 * 109.46710 * 299.99446 * 9 7 2 30 30 H 1.08998 * 109.47047 * 186.04599 * 11 10 9 31 31 H 1.08997 * 109.47504 * 306.04286 * 11 10 9 32 32 H 1.08002 * 119.99601 * 0.02562 * 13 12 11 33 33 H 1.08002 * 120.00383 * 180.23378 * 14 13 12 34 34 H 1.07995 * 120.00146 * 179.71468 * 15 14 13 35 35 H 1.08001 * 119.99898 * 179.97438 * 16 15 14 36 36 H 1.07997 * 120.00230 * 359.97438 * 17 12 11 37 37 H 1.08994 * 109.47074 * 173.94935 * 18 10 9 38 38 H 1.09009 * 109.46731 * 53.94653 * 18 10 9 39 39 H 1.07995 * 119.93465 * 0.02562 * 20 19 18 40 40 H 1.08004 * 119.98029 * 179.97438 * 21 20 19 41 41 H 0.96696 * 113.99962 * 89.99700 * 25 24 22 42 42 H 1.08008 * 120.01548 * 0.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2059 -3.6156 0.0005 11 6 1.5364 -4.8807 -0.3301 12 6 1.0430 -4.8309 -1.7532 13 6 -0.2275 -4.3606 -2.0282 14 6 -0.6784 -4.3103 -3.3339 15 6 0.1374 -4.7402 -4.3638 16 6 1.4059 -5.2156 -4.0883 17 6 1.8587 -5.2610 -2.7830 18 6 2.9046 -3.7109 1.2892 19 6 3.7746 -2.4953 1.4800 20 6 3.2635 -1.3714 2.1025 21 6 4.0583 -0.2541 2.2789 22 6 5.3674 -0.2581 1.8321 23 9 6.1443 0.8338 2.0038 24 6 5.8823 -1.3865 1.2065 25 8 7.1667 -1.3921 0.7611 26 6 5.0819 -2.5054 1.0327 27 1 -0.4850 0.8400 -0.0004 28 1 0.6249 -2.5571 -0.8897 29 1 0.6243 -2.5567 0.8903 30 1 2.2412 -5.7047 -0.2186 31 1 0.6919 -5.0314 0.3422 32 1 -0.8663 -4.0284 -1.2231 33 1 -1.6696 -3.9393 -3.5491 34 1 -0.2166 -4.7053 -5.3835 35 1 2.0430 -5.5519 -4.8929 36 1 2.8497 -5.6322 -2.5679 37 1 3.5249 -4.6071 1.3008 38 1 2.1733 -3.7646 2.0959 39 1 2.2415 -1.3665 2.4516 40 1 3.6566 0.6227 2.7651 41 1 7.8081 -1.7040 1.4141 42 1 5.4797 -3.3839 0.5463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236707012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:30 Heat of formation + Delta-G solvation = -36.422061 kcal Electronic energy + Delta-G solvation = -26464.432679 eV Core-core repulsion = 22709.784754 eV Total energy + Delta-G solvation = -3754.647926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.82908 -40.86077 -40.09137 -38.50279 -37.03794 -34.73072 -33.07564 -31.72185 -31.48863 -30.55875 -29.37242 -27.01975 -25.43383 -23.90058 -23.59247 -23.17191 -22.02918 -21.36434 -19.19459 -18.59325 -18.25463 -17.60830 -17.51764 -16.84705 -16.78072 -16.15259 -16.11984 -15.96466 -15.74315 -15.11405 -14.97254 -14.82775 -14.66560 -14.26817 -14.18212 -13.93000 -13.58575 -13.43820 -13.18773 -13.09620 -12.90756 -12.58666 -12.55715 -12.40060 -12.10438 -11.79767 -11.75708 -11.50552 -11.34937 -11.12051 -10.55455 -9.67875 -9.64754 -9.53886 -9.08711 -8.94258 -8.18119 -6.09751 0.24360 0.43378 0.58746 0.63729 1.33927 1.37904 1.44242 2.37428 2.62956 2.98598 3.14989 3.21823 3.48958 3.67258 3.92034 4.01911 4.03947 4.10548 4.26686 4.35990 4.38687 4.50763 4.53203 4.60368 4.68385 4.76289 4.81416 4.89455 5.05689 5.16070 5.23616 5.23900 5.26288 5.30120 5.37959 5.46431 5.67995 5.71509 5.72155 5.80790 5.86652 5.97700 6.14441 6.25086 6.41887 6.66275 6.86794 6.95996 7.46682 8.91466 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.005026 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.740930 B = 5569.395817 C = 6602.557045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.025 3.975 3 Si 0.905 3.095 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.236 1.236 7 C -0.483 4.483 8 H 0.077 0.923 9 C 0.199 3.801 10 N -0.534 5.534 11 C 0.094 3.906 12 C -0.082 4.082 13 C -0.123 4.123 14 C -0.137 4.137 15 C -0.130 4.130 16 C -0.129 4.129 17 C -0.108 4.108 18 C 0.105 3.895 19 C -0.061 4.061 20 C -0.011 4.011 21 C -0.177 4.177 22 C 0.047 3.953 23 F -0.152 7.152 24 C 0.045 3.955 25 O -0.498 6.498 26 C -0.098 4.098 27 H 0.259 0.741 28 H 0.021 0.979 29 H -0.033 1.033 30 H 0.104 0.896 31 H 0.029 0.971 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.106 0.894 38 H 0.036 0.964 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.404 0.596 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.437 -11.759 0.771 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.174 4.174 3 Si 0.732 3.268 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.160 1.160 7 C -0.521 4.521 8 H 0.095 0.905 9 C 0.073 3.927 10 N -0.258 5.258 11 C -0.033 4.033 12 C -0.082 4.082 13 C -0.142 4.142 14 C -0.155 4.155 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.127 4.127 18 C -0.022 4.022 19 C -0.061 4.061 20 C -0.030 4.030 21 C -0.197 4.197 22 C 0.027 3.973 23 F -0.131 7.131 24 C 0.000 4.000 25 O -0.310 6.310 26 C -0.117 4.117 27 H 0.068 0.932 28 H 0.039 0.961 29 H -0.016 1.016 30 H 0.122 0.878 31 H 0.048 0.952 32 H 0.118 0.882 33 H 0.144 0.856 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.124 0.876 38 H 0.054 0.946 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.262 0.738 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.417 -11.308 -0.074 13.002 hybrid contribution -0.545 1.718 0.945 2.035 sum 5.872 -9.591 0.871 11.279 Atomic orbital electron populations 1.70031 1.07052 1.27096 1.52163 1.25353 0.94937 1.01046 0.96035 0.86481 0.79055 0.81194 0.80047 1.21864 1.21977 1.16017 1.21790 0.94281 0.90375 1.45637 0.90496 1.19590 0.90189 0.88407 0.94541 1.62147 1.30194 1.03316 1.30175 1.21074 0.97570 0.92868 0.91790 1.19890 0.93704 0.98475 0.96163 1.21136 0.96584 0.99318 0.97166 1.21305 1.00788 1.00521 0.92883 1.21399 0.94714 0.99164 0.99564 1.21442 0.96317 0.99972 0.96972 1.21217 0.99479 0.99548 0.92436 1.20961 0.95644 0.95482 0.90082 1.19552 0.93579 0.96301 0.96710 1.20665 0.97257 0.91322 0.93786 1.20929 0.92469 1.00388 1.05875 1.18262 0.90548 0.84655 1.03786 1.91389 1.74791 1.52947 1.93984 1.18245 0.86984 0.92989 1.01799 1.84845 1.14116 1.88885 1.43159 1.21121 0.93417 0.97808 0.99381 0.93190 0.96112 1.01555 0.87821 0.95240 0.88163 0.85614 0.84056 0.83677 0.84520 0.87608 0.94588 0.86447 0.85630 0.73829 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.11 13.29 21.45 0.28 -52.82 16 2 C 0.03 1.37 5.44 84.65 0.46 1.83 16 3 Si 0.90 44.06 28.30 68.60 1.94 46.00 16 4 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 5 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 6 H -0.24 -10.65 4.86 99.48 0.48 -10.17 16 7 C -0.48 -24.82 5.37 25.60 0.14 -24.68 16 8 H 0.08 3.96 4.72 -2.91 -0.01 3.95 16 9 C 0.20 9.48 4.48 85.56 0.38 9.86 16 10 N -0.53 -19.99 4.55 -909.93 -4.14 -24.13 16 11 C 0.09 2.94 5.12 85.56 0.44 3.37 16 12 C -0.08 -2.70 4.92 -19.86 -0.10 -2.80 16 13 C -0.12 -4.36 7.86 22.27 0.17 -4.19 16 14 C -0.14 -4.29 10.05 22.27 0.22 -4.07 16 15 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 16 C -0.13 -3.37 10.05 22.27 0.22 -3.14 16 17 C -0.11 -3.11 9.70 22.27 0.22 -2.90 16 18 C 0.11 3.32 5.11 85.56 0.44 3.76 16 19 C -0.06 -2.09 3.46 -19.87 -0.07 -2.16 16 20 C -0.01 -0.44 5.87 22.28 0.13 -0.30 16 21 C -0.18 -6.84 7.46 22.29 0.17 -6.67 16 22 C 0.05 1.79 7.31 22.45 0.16 1.95 16 23 F -0.15 -5.85 17.11 44.97 0.77 -5.08 16 24 C 0.05 1.54 6.71 22.53 0.15 1.69 16 25 O -0.50 -14.69 13.37 -92.97 -1.24 -15.94 16 26 C -0.10 -3.13 9.44 22.36 0.21 -2.92 16 27 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.02 1.10 5.26 -2.39 -0.01 1.08 16 29 H -0.03 -1.72 7.99 -2.39 -0.02 -1.74 16 30 H 0.10 2.52 7.87 -2.39 -0.02 2.50 16 31 H 0.03 0.94 8.06 -2.39 -0.02 0.92 16 32 H 0.10 3.80 7.79 -2.91 -0.02 3.78 16 33 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.11 2.53 7.87 -2.39 -0.02 2.51 16 38 H 0.04 1.14 7.96 -2.38 -0.02 1.12 16 39 H 0.12 4.83 7.68 -2.91 -0.02 4.80 16 40 H 0.13 4.78 7.12 -2.91 -0.02 4.75 16 41 H 0.40 7.17 9.06 -74.06 -0.67 6.50 16 42 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -65.49 344.05 1.34 -64.16 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.15 Total: 22.48 kcal Atomic # 6 Polarization: -38.24 SS G_CDS: 3.58 Total: -34.67 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -3.86 Total: -76.96 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -1.24 Total: -15.94 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.77 Total: -5.08 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.94 Total: 46.00 kcal Total: -65.49 1.34 -64.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236707012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.735 kcal (2) G-P(sol) polarization free energy of solvation -65.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds