Wall clock time and date at job start Tue Mar 31 2020 10:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99412 * 2 1 4 4 H 1.48500 * 109.47059 * 269.99715 * 3 2 1 5 5 H 1.48490 * 109.47442 * 30.00075 * 3 2 1 6 6 H 1.48501 * 109.46742 * 150.00114 * 3 2 1 7 7 C 1.37870 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00480 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99672 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47117 * 177.25519 * 9 7 2 11 11 C 1.46904 * 110.99935 * 166.45935 * 10 9 7 12 12 C 1.50700 * 109.47088 * 293.95106 * 11 10 9 13 13 C 1.38238 * 119.99846 * 90.00031 * 12 11 10 14 14 C 1.38234 * 119.99890 * 179.97438 * 13 12 11 15 15 C 1.38240 * 119.99938 * 0.09619 * 14 13 12 16 16 C 1.38228 * 120.00135 * 359.86047 * 15 14 13 17 17 C 1.38239 * 120.00262 * 0.09142 * 16 15 14 18 18 C 1.46899 * 110.99800 * 290.40959 * 10 9 7 19 19 C 1.50701 * 109.47027 * 160.30441 * 18 10 9 20 20 C 1.38180 * 119.95723 * 274.20035 * 19 18 10 21 21 C 1.38725 * 119.98880 * 179.70956 * 20 19 18 22 22 O 1.35900 * 120.04109 * 180.29394 * 21 20 19 23 23 C 1.38709 * 119.91794 * 0.55645 * 21 20 19 24 24 C 1.38345 * 119.92201 * 359.73616 * 23 21 20 25 25 F 1.35099 * 120.00027 * 179.97438 * 24 23 21 26 26 C 1.38209 * 119.95872 * 94.47167 * 19 18 10 27 27 H 0.96990 * 120.00103 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47446 * 57.25422 * 9 7 2 29 29 H 1.08999 * 109.47279 * 297.25425 * 9 7 2 30 30 H 1.08998 * 109.47197 * 173.95436 * 11 10 9 31 31 H 1.08998 * 109.47318 * 53.95502 * 11 10 9 32 32 H 1.07994 * 120.00094 * 359.70042 * 13 12 11 33 33 H 1.07993 * 119.99955 * 179.97438 * 14 13 12 34 34 H 1.08000 * 119.99608 * 179.97438 * 15 14 13 35 35 H 1.08003 * 120.00457 * 180.02562 * 16 15 14 36 36 H 1.07994 * 120.00829 * 179.97438 * 17 16 15 37 37 H 1.08999 * 109.47587 * 280.30299 * 18 10 9 38 38 H 1.09004 * 109.47208 * 40.30861 * 18 10 9 39 39 H 1.07992 * 120.00328 * 359.97339 * 20 19 18 40 40 H 0.96695 * 113.99970 * 270.26475 * 22 21 20 41 41 H 1.08009 * 120.04399 * 179.75211 * 23 21 20 42 42 H 1.07998 * 119.95976 * 359.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5774 0.0656 11 6 5.4340 -2.6443 -0.2521 12 6 5.6477 -2.2563 -1.6925 13 6 5.8718 -0.9336 -2.0261 14 6 6.0683 -0.5777 -3.3473 15 6 6.0389 -1.5443 -4.3352 16 6 5.8158 -2.8670 -4.0015 17 6 5.6202 -3.2231 -2.6802 18 6 3.7254 -3.1717 1.3804 19 6 3.7821 -4.6739 1.2745 20 6 2.6608 -5.3809 0.8842 21 6 2.7140 -6.7633 0.7807 22 8 1.6136 -7.4592 0.3912 23 6 3.8901 -7.4347 1.0805 24 6 5.0089 -6.7239 1.4768 25 9 6.1551 -7.3763 1.7697 26 6 4.9538 -5.3431 1.5733 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6386 0.8649 29 1 3.8753 -0.7227 -0.9130 30 1 5.7946 -3.6604 -0.0923 31 1 5.9819 -1.9585 0.3941 32 1 5.8888 -0.1776 -1.2550 33 1 6.2429 0.4557 -3.6079 34 1 6.1921 -1.2661 -5.3675 35 1 5.7932 -3.6223 -4.7733 36 1 5.4454 -4.2564 -2.4195 37 1 4.4715 -2.8296 2.0976 38 1 2.7334 -2.8683 1.7154 39 1 1.7445 -4.8571 0.6557 40 1 1.0406 -7.7300 1.1215 41 1 3.9327 -8.5113 1.0045 42 1 5.8278 -4.7888 1.8820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237285204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:24 Heat of formation + Delta-G solvation = -29.386204 kcal Electronic energy + Delta-G solvation = -25809.035278 eV Core-core repulsion = 22054.692450 eV Total energy + Delta-G solvation = -3754.342828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.88133 -39.74301 -39.04711 -37.29380 -35.92715 -32.63565 -31.92869 -30.69870 -30.46661 -29.64548 -27.90410 -26.27269 -23.96151 -22.59147 -22.35678 -21.60534 -21.17009 -19.89945 -18.19530 -16.98134 -16.66297 -16.53868 -16.33357 -16.02029 -15.62409 -15.19275 -14.96634 -14.69237 -14.51938 -14.33608 -13.82268 -13.66407 -13.44936 -13.11197 -12.67029 -12.43964 -12.30507 -12.11846 -12.05401 -11.83415 -11.54640 -11.44253 -11.05803 -10.80547 -10.68416 -10.65984 -10.49578 -10.32120 -9.93338 -9.37614 -8.75196 -8.63937 -8.53362 -8.50082 -8.39153 -7.50382 -6.08969 -4.05869 1.15558 1.23626 1.68205 1.73866 3.24972 3.31835 3.32957 3.51429 3.95193 4.08160 4.38088 4.47888 4.79688 4.93815 5.00901 5.12449 5.18138 5.23634 5.24947 5.30379 5.40743 5.43401 5.54169 5.65127 5.80878 5.82662 5.93443 5.97633 6.04617 6.14253 6.31801 6.33128 6.36631 6.40850 6.62563 6.74691 6.78685 6.80117 6.82026 6.92669 7.00063 7.32374 7.55498 7.63099 7.78301 7.90503 8.59934 8.99498 9.52896 11.04044 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009688 B = 0.005091 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.390959 B = 5498.512160 C = 7227.577374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.869 3.131 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.507 4.507 8 H 0.081 0.919 9 C 0.155 3.845 10 N -0.513 5.513 11 C 0.085 3.915 12 C -0.062 4.062 13 C -0.108 4.108 14 C -0.124 4.124 15 C -0.126 4.126 16 C -0.125 4.125 17 C -0.098 4.098 18 C 0.093 3.907 19 C -0.015 4.015 20 C -0.124 4.124 21 C 0.132 3.868 22 O -0.494 6.494 23 C -0.192 4.192 24 C 0.108 3.892 25 F -0.143 7.143 26 C -0.162 4.162 27 H 0.263 0.737 28 H -0.010 1.010 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.037 0.963 38 H 0.107 0.893 39 H 0.143 0.857 40 H 0.391 0.609 41 H 0.135 0.865 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.959 -9.925 0.854 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.099 0.901 9 C 0.029 3.971 10 N -0.237 5.237 11 C -0.043 4.043 12 C -0.062 4.062 13 C -0.127 4.127 14 C -0.142 4.142 15 C -0.145 4.145 16 C -0.143 4.143 17 C -0.116 4.116 18 C -0.035 4.035 19 C -0.016 4.016 20 C -0.143 4.143 21 C 0.087 3.913 22 O -0.304 6.304 23 C -0.211 4.211 24 C 0.089 3.911 25 F -0.121 7.121 26 C -0.182 4.182 27 H 0.073 0.927 28 H 0.007 0.993 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.055 0.945 38 H 0.125 0.875 39 H 0.161 0.839 40 H 0.248 0.752 41 H 0.153 0.847 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.807 -9.997 -0.034 14.722 hybrid contribution 0.704 1.222 0.946 1.698 sum 11.511 -8.775 0.912 14.503 Atomic orbital electron populations 1.69882 1.06065 1.26813 1.51004 1.24862 0.94678 0.98688 0.94877 0.86954 0.80363 0.84347 0.78710 1.20057 1.21210 1.19245 1.20987 0.88589 0.94665 1.50307 0.90077 1.20366 0.97247 0.83602 0.95843 1.61929 1.12045 1.22441 1.27263 1.21147 0.90766 1.00481 0.91902 1.19732 0.97787 0.93234 0.95491 1.21069 0.99426 0.95734 0.96456 1.21051 1.00947 0.99106 0.93071 1.21034 1.01252 0.93338 0.98837 1.21063 1.00804 0.96174 0.96217 1.20959 0.98908 0.99287 0.92461 1.21082 1.03647 0.87991 0.90750 1.19734 0.91398 0.96536 0.93977 1.21535 1.00572 0.92758 0.99483 1.18123 0.86740 0.89816 0.96603 1.84839 1.34865 1.74373 1.36365 1.21235 0.93075 1.00966 1.05859 1.17351 0.82099 0.90215 1.01479 1.91482 1.47945 1.81547 1.91151 1.21090 0.99604 0.92129 1.05364 0.92663 0.99261 0.94539 0.90659 0.94849 0.86527 0.86545 0.86658 0.86526 0.86343 0.94480 0.87451 0.83898 0.75243 0.84734 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 20.93 27.52 -169.99 -4.68 16.25 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.14 6.46 56.52 0.37 -5.78 16 7 C -0.51 -13.73 8.79 -34.44 -0.30 -14.03 16 8 H 0.08 2.38 7.89 -52.49 -0.41 1.97 16 9 C 0.16 3.55 3.62 -4.97 -0.02 3.53 16 10 N -0.51 -9.99 4.38 -238.96 -1.05 -11.03 16 11 C 0.08 1.41 4.94 -4.97 -0.02 1.38 16 12 C -0.06 -1.05 4.92 -104.62 -0.52 -1.57 16 13 C -0.11 -1.81 7.86 -39.58 -0.31 -2.12 16 14 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 15 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 16 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 17 C -0.10 -1.55 9.70 -39.58 -0.38 -1.94 16 18 C 0.09 1.60 4.97 -4.98 -0.02 1.57 16 19 C -0.02 -0.23 5.06 -104.65 -0.53 -0.76 16 20 C -0.12 -1.90 9.66 -39.42 -0.38 -2.29 16 21 C 0.13 1.79 6.70 -39.23 -0.26 1.53 16 22 O -0.49 -6.07 13.50 -19.42 -0.26 -6.33 16 23 C -0.19 -2.45 9.97 -39.37 -0.39 -2.84 16 24 C 0.11 1.44 7.30 -39.44 -0.29 1.15 16 25 F -0.14 -1.90 17.27 2.25 0.04 -1.86 16 26 C -0.16 -2.21 8.34 -39.49 -0.33 -2.54 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H -0.01 -0.24 6.95 -51.93 -0.36 -0.60 16 29 H 0.04 0.86 4.82 -51.93 -0.25 0.61 16 30 H 0.08 1.13 6.17 -51.93 -0.32 0.81 16 31 H 0.03 0.53 8.06 -51.93 -0.42 0.11 16 32 H 0.12 1.91 7.78 -52.49 -0.41 1.50 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.04 0.58 7.91 -51.93 -0.41 0.17 16 38 H 0.11 2.07 6.88 -51.93 -0.36 1.71 16 39 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 40 H 0.39 2.75 9.06 45.56 0.41 3.16 16 41 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 42 H 0.13 1.60 7.93 -52.49 -0.42 1.19 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -31.21 354.84 -9.53 -40.74 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -4.65 Total: 6.57 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -5.05 Total: -23.66 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.27 Total: -37.07 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.26 Total: -6.33 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.68 Total: 16.25 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.21 -9.53 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237285204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.355 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds