Wall clock time and date at job start Tue Mar 31 2020 10:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99412 * 2 1 4 4 H 1.48500 * 109.47059 * 269.99715 * 3 2 1 5 5 H 1.48490 * 109.47442 * 30.00075 * 3 2 1 6 6 H 1.48501 * 109.46742 * 150.00114 * 3 2 1 7 7 C 1.37870 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00480 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99672 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47117 * 177.25519 * 9 7 2 11 11 C 1.46904 * 110.99935 * 166.45935 * 10 9 7 12 12 C 1.50700 * 109.47088 * 293.95106 * 11 10 9 13 13 C 1.38238 * 119.99846 * 90.00031 * 12 11 10 14 14 C 1.38234 * 119.99890 * 179.97438 * 13 12 11 15 15 C 1.38240 * 119.99938 * 0.09619 * 14 13 12 16 16 C 1.38228 * 120.00135 * 359.86047 * 15 14 13 17 17 C 1.38239 * 120.00262 * 0.09142 * 16 15 14 18 18 C 1.46899 * 110.99800 * 290.40959 * 10 9 7 19 19 C 1.50701 * 109.47027 * 160.30441 * 18 10 9 20 20 C 1.38180 * 119.95723 * 274.20035 * 19 18 10 21 21 C 1.38725 * 119.98880 * 179.70956 * 20 19 18 22 22 O 1.35900 * 120.04109 * 180.29394 * 21 20 19 23 23 C 1.38709 * 119.91794 * 0.55645 * 21 20 19 24 24 C 1.38345 * 119.92201 * 359.73616 * 23 21 20 25 25 F 1.35099 * 120.00027 * 179.97438 * 24 23 21 26 26 C 1.38209 * 119.95872 * 94.47167 * 19 18 10 27 27 H 0.96990 * 120.00103 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47446 * 57.25422 * 9 7 2 29 29 H 1.08999 * 109.47279 * 297.25425 * 9 7 2 30 30 H 1.08998 * 109.47197 * 173.95436 * 11 10 9 31 31 H 1.08998 * 109.47318 * 53.95502 * 11 10 9 32 32 H 1.07994 * 120.00094 * 359.70042 * 13 12 11 33 33 H 1.07993 * 119.99955 * 179.97438 * 14 13 12 34 34 H 1.08000 * 119.99608 * 179.97438 * 15 14 13 35 35 H 1.08003 * 120.00457 * 180.02562 * 16 15 14 36 36 H 1.07994 * 120.00829 * 179.97438 * 17 16 15 37 37 H 1.08999 * 109.47587 * 280.30299 * 18 10 9 38 38 H 1.09004 * 109.47208 * 40.30861 * 18 10 9 39 39 H 1.07992 * 120.00328 * 359.97339 * 20 19 18 40 40 H 0.96695 * 113.99970 * 270.26475 * 22 21 20 41 41 H 1.08009 * 120.04399 * 179.75211 * 23 21 20 42 42 H 1.07998 * 119.95976 * 359.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5774 0.0656 11 6 5.4340 -2.6443 -0.2521 12 6 5.6477 -2.2563 -1.6925 13 6 5.8718 -0.9336 -2.0261 14 6 6.0683 -0.5777 -3.3473 15 6 6.0389 -1.5443 -4.3352 16 6 5.8158 -2.8670 -4.0015 17 6 5.6202 -3.2231 -2.6802 18 6 3.7254 -3.1717 1.3804 19 6 3.7821 -4.6739 1.2745 20 6 2.6608 -5.3809 0.8842 21 6 2.7140 -6.7633 0.7807 22 8 1.6136 -7.4592 0.3912 23 6 3.8901 -7.4347 1.0805 24 6 5.0089 -6.7239 1.4768 25 9 6.1551 -7.3763 1.7697 26 6 4.9538 -5.3431 1.5733 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6386 0.8649 29 1 3.8753 -0.7227 -0.9130 30 1 5.7946 -3.6604 -0.0923 31 1 5.9819 -1.9585 0.3941 32 1 5.8888 -0.1776 -1.2550 33 1 6.2429 0.4557 -3.6079 34 1 6.1921 -1.2661 -5.3675 35 1 5.7932 -3.6223 -4.7733 36 1 5.4454 -4.2564 -2.4195 37 1 4.4715 -2.8296 2.0976 38 1 2.7334 -2.8683 1.7154 39 1 1.7445 -4.8571 0.6557 40 1 1.0406 -7.7300 1.1215 41 1 3.9327 -8.5113 1.0045 42 1 5.8278 -4.7888 1.8820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237285204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:23 Heat of formation + Delta-G solvation = -48.671931 kcal Electronic energy + Delta-G solvation = -25809.871569 eV Core-core repulsion = 22054.692450 eV Total energy + Delta-G solvation = -3755.179120 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.93726 -40.89892 -40.21345 -38.52402 -37.17389 -34.68936 -33.10625 -32.03399 -31.67239 -30.76386 -29.64159 -27.52228 -25.55446 -23.68335 -23.59113 -23.01717 -22.40067 -21.33525 -19.28323 -18.97141 -17.82926 -17.62490 -17.45376 -17.14900 -16.86820 -16.56152 -16.22694 -16.11947 -15.87120 -15.57469 -15.33464 -14.95097 -14.66832 -14.47726 -14.23972 -13.85084 -13.63030 -13.43201 -13.33950 -13.17746 -12.85548 -12.71852 -12.54109 -12.38326 -12.07664 -11.97633 -11.83844 -11.77104 -11.59448 -11.39277 -10.75985 -9.87269 -9.72914 -9.63543 -9.58105 -9.01854 -8.25708 -6.27034 0.07939 0.10781 0.51190 0.57042 1.34364 1.34603 1.44152 2.34730 2.40066 2.86274 2.93280 3.08658 3.39930 3.50776 3.73208 3.92018 3.95225 4.01386 4.10874 4.21251 4.27204 4.30856 4.33005 4.44817 4.58597 4.64473 4.71786 4.80340 4.85244 4.94798 4.98378 5.01238 5.08177 5.17986 5.21742 5.27651 5.51981 5.57155 5.62596 5.66115 5.77935 5.78498 6.00119 6.18103 6.33454 6.63388 6.78849 6.80042 7.35633 8.90755 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009688 B = 0.005091 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.390959 B = 5498.512160 C = 7227.577374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.935 3.065 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.506 4.506 8 H 0.040 0.960 9 C 0.168 3.832 10 N -0.528 5.528 11 C 0.089 3.911 12 C -0.084 4.084 13 C -0.129 4.129 14 C -0.132 4.132 15 C -0.127 4.127 16 C -0.128 4.128 17 C -0.113 4.113 18 C 0.097 3.903 19 C -0.022 4.022 20 C -0.144 4.144 21 C 0.139 3.861 22 O -0.504 6.504 23 C -0.183 4.183 24 C 0.111 3.889 25 F -0.139 7.139 26 C -0.157 4.157 27 H 0.265 0.735 28 H -0.010 1.010 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.414 0.586 41 H 0.158 0.842 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.442 -10.418 0.235 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.186 4.186 3 Si 0.759 3.241 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.042 3.958 10 N -0.252 5.252 11 C -0.038 4.038 12 C -0.084 4.084 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.145 4.145 16 C -0.146 4.146 17 C -0.131 4.131 18 C -0.030 4.030 19 C -0.023 4.023 20 C -0.163 4.163 21 C 0.094 3.906 22 O -0.318 6.318 23 C -0.202 4.202 24 C 0.091 3.909 25 F -0.117 7.117 26 C -0.176 4.176 27 H 0.074 0.926 28 H 0.008 0.992 29 H 0.055 0.945 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.132 0.868 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.139 0.861 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.134 0.866 40 H 0.274 0.726 41 H 0.176 0.824 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.303 -10.519 -0.633 16.971 hybrid contribution -0.118 1.213 1.102 1.643 sum 13.184 -9.305 0.469 16.144 Atomic orbital electron populations 1.70041 1.07990 1.27837 1.52972 1.25731 0.95456 1.02696 0.94697 0.85894 0.79707 0.79376 0.79145 1.19378 1.20958 1.17105 1.21220 0.91001 0.93107 1.49145 0.94178 1.20058 0.94226 0.85912 0.95620 1.61795 1.14369 1.20276 1.28729 1.21172 0.88695 1.01649 0.92266 1.19872 0.98983 0.93825 0.95756 1.21214 1.00510 0.95664 0.97374 1.21382 1.00385 1.00540 0.92676 1.21430 0.99939 0.92970 1.00170 1.21421 0.99738 0.97190 0.96205 1.21142 0.99396 0.99375 0.93198 1.20962 1.02309 0.89528 0.90207 1.19464 0.92235 0.95192 0.95428 1.21442 0.99875 0.93878 1.01130 1.18044 0.87606 0.89049 0.95933 1.84777 1.34996 1.74012 1.37974 1.21409 0.92174 1.02087 1.04535 1.17352 0.82291 0.90080 1.01139 1.91497 1.47761 1.81406 1.91076 1.21124 0.99276 0.92483 1.04726 0.92629 0.99208 0.94545 0.89099 0.93984 0.86801 0.84546 0.83697 0.84025 0.86057 0.92608 0.90715 0.86586 0.72579 0.82413 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 2 C 0.01 0.65 5.47 84.65 0.46 1.12 16 3 Si 0.93 43.42 27.52 68.60 1.89 45.31 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.59 6.46 99.48 0.64 -9.94 16 7 C -0.51 -28.53 8.79 25.60 0.23 -28.30 16 8 H 0.04 2.52 7.89 -2.91 -0.02 2.50 16 9 C 0.17 7.79 3.62 85.56 0.31 8.10 16 10 N -0.53 -20.78 4.38 -909.93 -3.99 -24.77 16 11 C 0.09 2.88 4.94 85.56 0.42 3.31 16 12 C -0.08 -2.77 4.92 -19.86 -0.10 -2.86 16 13 C -0.13 -4.15 7.86 22.27 0.17 -3.97 16 14 C -0.13 -3.70 10.05 22.27 0.22 -3.48 16 15 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 16 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 17 C -0.11 -3.44 9.70 22.27 0.22 -3.22 16 18 C 0.10 3.43 4.97 85.56 0.43 3.85 16 19 C -0.02 -0.68 5.06 -19.88 -0.10 -0.78 16 20 C -0.14 -4.55 9.66 22.37 0.22 -4.34 16 21 C 0.14 3.67 6.70 22.50 0.15 3.82 16 22 O -0.50 -11.90 13.50 -92.42 -1.25 -13.15 16 23 C -0.18 -4.27 9.97 22.41 0.22 -4.04 16 24 C 0.11 2.70 7.30 22.36 0.16 2.86 16 25 F -0.14 -3.31 17.27 44.97 0.78 -2.53 16 26 C -0.16 -4.01 8.34 22.33 0.19 -3.82 16 27 H 0.26 15.37 8.31 -92.72 -0.77 14.60 16 28 H -0.01 -0.45 6.95 -2.39 -0.02 -0.46 16 29 H 0.04 1.70 4.82 -2.39 -0.01 1.69 16 30 H 0.09 2.61 6.17 -2.39 -0.01 2.59 16 31 H 0.04 1.28 8.06 -2.39 -0.02 1.26 16 32 H 0.11 3.61 7.78 -2.91 -0.02 3.58 16 33 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 34 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.06 1.72 7.91 -2.39 -0.02 1.70 16 38 H 0.07 3.09 6.88 -2.39 -0.02 3.07 16 39 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 40 H 0.41 5.34 9.06 -74.06 -0.67 4.67 16 41 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.15 3.25 7.93 -2.91 -0.02 3.23 16 Total: -1.00 -68.87 354.84 1.69 -67.18 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.31 Total: 24.24 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 3.65 Total: -37.94 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -3.69 Total: -83.11 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -1.25 Total: -13.15 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.89 Total: 45.31 kcal Total: -68.87 1.69 -67.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237285204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.508 kcal (2) G-P(sol) polarization free energy of solvation -68.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds