Wall clock time and date at job start Tue Mar 31 2020 11:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36214 * 119.94573 * 2 1 4 4 C 1.40941 * 119.89202 * 180.27534 * 3 2 1 5 5 C 1.40967 * 120.11434 * 179.69491 * 4 3 2 6 6 H 1.08002 * 120.00566 * 205.55884 * 5 4 3 7 7 C 1.40013 * 119.99766 * 25.55254 * 5 4 3 8 8 N 1.30797 * 120.00198 * 16.74127 * 7 5 4 9 9 Si 1.86799 * 120.00032 * 196.73805 * 7 5 4 10 10 H 1.48501 * 109.47133 * 59.99783 * 9 7 5 11 11 H 1.48505 * 109.47342 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47286 * 300.00104 * 9 7 5 13 13 C 1.40983 * 119.78206 * 359.71287 * 4 3 2 14 14 C 1.36183 * 119.88377 * 0.02562 * 13 4 3 15 15 C 1.40023 * 119.94634 * 179.73352 * 2 1 3 16 16 C 1.47761 * 119.88993 * 0.02562 * 15 2 1 17 17 C 1.39939 * 120.61306 * 112.15454 * 16 15 2 18 18 C 1.38336 * 118.37712 * 179.97438 * 17 16 15 19 19 C 1.38531 * 119.52874 * 0.02562 * 18 17 16 20 20 N 1.31719 * 121.22464 * 0.02562 * 19 18 17 21 21 C 1.32588 * 121.77226 * 359.97438 * 20 19 18 22 22 C 1.48108 * 119.84280 * 180.02562 * 21 20 19 23 23 C 1.39477 * 120.13844 * 135.23138 * 22 21 20 24 24 C 1.37980 * 119.86379 * 179.72094 * 23 22 21 25 25 C 1.38350 * 120.13341 * 0.55195 * 24 23 22 26 26 C 1.38360 * 120.27378 * 359.72223 * 25 24 23 27 27 C 1.37975 * 120.13337 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47033 * 274.11269 * 1 2 3 29 29 H 1.08991 * 109.47297 * 34.12130 * 1 2 3 30 30 H 1.09005 * 109.46503 * 154.12300 * 1 2 3 31 31 H 1.08001 * 120.05496 * 359.97438 * 3 2 1 32 32 H 0.96995 * 119.99984 * 179.97438 * 8 7 5 33 33 H 1.07997 * 120.06002 * 179.97438 * 13 4 3 34 34 H 1.08003 * 119.94898 * 179.97438 * 14 13 4 35 35 H 1.07999 * 120.81820 * 359.95827 * 17 16 15 36 36 H 1.08007 * 120.23539 * 180.02562 * 18 17 16 37 37 H 1.07995 * 119.38514 * 180.02562 * 19 18 17 38 38 H 1.08006 * 120.07012 * 359.97316 * 23 22 21 39 39 H 1.07997 * 119.93500 * 180.29204 * 24 23 22 40 40 H 1.07999 * 119.86871 * 179.70014 * 25 24 23 41 41 H 1.07997 * 119.93113 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.07249 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1803 0.0000 4 6 3.5964 1.1790 -0.0059 5 6 4.3047 2.3977 -0.0124 6 1 5.3039 2.4395 -0.4202 7 6 3.7129 3.5542 0.5097 8 7 2.6652 3.4589 1.2870 9 14 4.4195 5.2332 0.0964 10 1 4.3762 5.4403 -1.3735 11 1 3.6180 6.2870 0.7691 12 1 5.8266 5.3073 0.5653 13 6 4.2955 -0.0453 -0.0056 14 6 3.6066 -1.2200 -0.0002 15 6 2.2060 -1.2133 0.0056 16 6 1.4635 -2.4908 0.0110 17 6 1.4986 -3.3401 -1.1007 18 6 0.7868 -4.5250 -1.0455 19 6 0.0658 -4.8359 0.0958 20 7 0.0440 -4.0232 1.1322 21 6 0.7075 -2.8753 1.1334 22 6 0.6536 -1.9940 2.3225 23 6 1.8203 -1.4085 2.8137 24 6 1.7627 -0.5838 3.9184 25 6 0.5525 -0.3464 4.5455 26 6 -0.6074 -0.9289 4.0665 27 6 -0.5636 -1.7504 2.9588 28 1 -0.3633 0.0737 1.0250 29 1 -0.3633 0.8507 -0.5764 30 1 -0.3632 -0.9247 -0.4486 31 1 1.6470 2.1156 -0.0004 32 1 2.2555 4.2601 1.6490 33 1 5.3754 -0.0515 -0.0105 34 1 4.1411 -2.1585 -0.0004 35 1 2.0671 -3.0768 -1.9803 36 1 0.7932 -5.2029 -1.8863 37 1 -0.4887 -5.7617 0.1365 38 1 2.7664 -1.5969 2.3279 39 1 2.6647 -0.1261 4.2969 40 1 0.5131 0.2959 5.4128 41 1 -1.5490 -0.7401 4.5605 42 1 -1.4697 -2.2043 2.5855 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239882865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:28 Heat of formation + Delta-G solvation = 68.984603 kcal Electronic energy + Delta-G solvation = -25635.972595 eV Core-core repulsion = 22316.664670 eV Total energy + Delta-G solvation = -3319.307925 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.13574 -38.14080 -37.67380 -34.21659 -32.56044 -32.25064 -31.39828 -30.37923 -29.56187 -28.52879 -25.89102 -25.45212 -23.58678 -22.78974 -21.78903 -20.84917 -20.56193 -19.59006 -17.16736 -17.08889 -16.07793 -15.75893 -15.43604 -15.22064 -14.47044 -14.40574 -13.89785 -13.78196 -13.34799 -13.11712 -12.97189 -12.80351 -12.71371 -12.63514 -12.18365 -11.93332 -11.84403 -11.54862 -11.40948 -11.16235 -11.07527 -10.78391 -10.75508 -10.58316 -10.27935 -9.77841 -9.63578 -9.47573 -9.28046 -9.07359 -8.74514 -8.40031 -7.88810 -7.42598 -7.23512 -6.85125 -4.43786 1.14955 1.62336 1.95239 2.08825 2.66216 3.00498 3.02404 3.03728 3.11665 3.84540 4.07403 4.37492 4.49137 4.60269 5.13949 5.24504 5.36827 5.40464 5.47385 5.49468 5.56461 5.61990 5.85015 5.96905 6.03078 6.07900 6.10786 6.18086 6.30536 6.36674 6.43498 6.47644 6.55291 6.65952 6.72169 6.82754 6.87587 6.96942 7.02023 7.05473 7.15874 7.22893 7.26776 7.47639 7.55351 7.79817 7.95654 8.05089 8.20554 8.34090 8.53500 8.78166 8.88625 10.06341 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.005003 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.906524 B = 5595.581008 C = 6759.960174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.035 4.035 3 C -0.163 4.163 4 C 0.122 3.878 5 C -0.455 4.455 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.780 5.780 9 Si 0.907 3.093 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.265 1.265 13 C -0.230 4.230 14 C -0.068 4.068 15 C -0.201 4.201 16 C -0.016 4.016 17 C -0.084 4.084 18 C -0.175 4.175 19 C 0.073 3.927 20 N -0.478 5.478 21 C 0.157 3.843 22 C -0.028 4.028 23 C -0.069 4.069 24 C -0.115 4.115 25 C -0.114 4.114 26 C -0.134 4.134 27 C -0.094 4.094 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.118 0.882 32 H 0.283 0.717 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.441 -7.428 0.825 8.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.036 4.036 3 C -0.182 4.182 4 C 0.119 3.881 5 C -0.484 4.484 6 H 0.096 0.904 7 C -0.143 4.143 8 N -0.404 5.404 9 Si 0.731 3.269 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.189 1.189 13 C -0.250 4.250 14 C -0.086 4.086 15 C -0.203 4.203 16 C -0.018 4.018 17 C -0.110 4.110 18 C -0.194 4.194 19 C -0.085 4.085 20 N -0.186 5.186 21 C 0.021 3.979 22 C -0.028 4.028 23 C -0.088 4.088 24 C -0.133 4.133 25 C -0.133 4.133 26 C -0.152 4.152 27 C -0.112 4.112 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.136 0.864 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.099 -7.522 1.706 9.246 hybrid contribution 0.798 1.022 -0.996 1.635 sum -4.301 -6.500 0.710 7.827 Atomic orbital electron populations 1.20731 0.94100 1.00158 1.01170 1.19100 0.93407 0.92527 0.98539 1.20802 0.94195 0.96023 1.07215 1.17631 0.91948 0.91988 0.86537 1.19574 1.01746 0.92623 1.34419 0.90370 1.25946 0.94232 1.01441 0.92680 1.69806 1.17812 1.31763 1.21017 0.86382 0.79936 0.80567 0.79999 1.18758 1.20237 1.18928 1.20610 0.97655 0.92494 1.14213 1.20199 0.92321 0.96437 0.99672 1.17616 0.92082 0.89292 1.21273 1.19895 0.94836 0.94863 0.92218 1.21796 0.97721 0.93375 0.98096 1.22037 0.99645 0.98083 0.99679 1.22517 0.98150 0.98540 0.89266 1.67567 1.19084 1.03552 1.28362 1.20069 0.94007 0.90994 0.92837 1.18248 0.93758 0.97200 0.93642 1.21331 0.98157 0.94777 0.94514 1.21016 0.97936 0.98193 0.96126 1.21125 0.92838 0.99447 0.99849 1.20918 0.98004 0.98951 0.97356 1.21052 0.96898 0.97891 0.95403 0.92095 0.93068 0.93781 0.86439 0.90619 0.88969 0.89577 0.85090 0.85548 0.83506 0.85346 0.86167 0.86677 0.86612 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 8.62 36.01 0.31 -1.78 16 2 C -0.04 -0.78 5.03 -104.68 -0.53 -1.31 16 3 C -0.16 -4.01 8.27 -39.29 -0.32 -4.33 16 4 C 0.12 3.05 5.57 -106.80 -0.59 2.46 16 5 C -0.45 -11.43 9.03 -37.88 -0.34 -11.78 16 6 H 0.08 1.89 7.90 -52.49 -0.41 1.48 16 7 C 0.08 1.82 5.15 -17.33 -0.09 1.74 16 8 N -0.78 -19.16 10.94 55.55 0.61 -18.55 16 9 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 10 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 11 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 12 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 13 C -0.23 -5.31 9.73 -39.28 -0.38 -5.69 16 14 C -0.07 -1.44 8.62 -39.63 -0.34 -1.78 16 15 C -0.20 -4.18 3.09 -104.65 -0.32 -4.50 16 16 C -0.02 -0.30 3.96 -104.45 -0.41 -0.72 16 17 C -0.08 -1.36 9.91 -38.91 -0.39 -1.75 16 18 C -0.17 -2.39 10.09 -39.44 -0.40 -2.79 16 19 C 0.07 1.06 11.17 -17.49 -0.20 0.86 16 20 N -0.48 -8.29 10.15 -9.47 -0.10 -8.39 16 21 C 0.16 2.92 5.81 -82.57 -0.48 2.44 16 22 C -0.03 -0.51 3.71 -104.92 -0.39 -0.90 16 23 C -0.07 -1.32 7.98 -39.21 -0.31 -1.64 16 24 C -0.11 -2.04 10.03 -39.63 -0.40 -2.44 16 25 C -0.11 -1.82 10.04 -39.50 -0.40 -2.22 16 26 C -0.13 -2.07 10.03 -39.63 -0.40 -2.47 16 27 C -0.09 -1.58 8.88 -39.21 -0.35 -1.93 16 28 H 0.06 1.22 6.67 -51.93 -0.35 0.87 16 29 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 30 H 0.04 0.84 6.75 -51.93 -0.35 0.49 16 31 H 0.12 3.04 6.18 -52.49 -0.32 2.72 16 32 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 33 H 0.09 2.02 8.06 -52.49 -0.42 1.59 16 34 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 37 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.13 2.61 5.97 -52.48 -0.31 2.30 16 39 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 42 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -26.67 349.11 -11.09 -37.76 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.11 Total: 11.59 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: -6.73 Total: -40.51 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.51 Total: -26.94 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.67 -11.09 -37.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239882865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.745 kcal (2) G-P(sol) polarization free energy of solvation -26.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds