Wall clock time and date at job start Tue Mar 31 2020 11:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36214 * 119.94573 * 2 1 4 4 C 1.40941 * 119.89202 * 180.27534 * 3 2 1 5 5 C 1.40967 * 120.11434 * 179.69491 * 4 3 2 6 6 H 1.08002 * 120.00566 * 205.55884 * 5 4 3 7 7 C 1.40013 * 119.99766 * 25.55254 * 5 4 3 8 8 N 1.30797 * 120.00198 * 16.74127 * 7 5 4 9 9 Si 1.86799 * 120.00032 * 196.73805 * 7 5 4 10 10 H 1.48501 * 109.47133 * 59.99783 * 9 7 5 11 11 H 1.48505 * 109.47342 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47286 * 300.00104 * 9 7 5 13 13 C 1.40983 * 119.78206 * 359.71287 * 4 3 2 14 14 C 1.36183 * 119.88377 * 0.02562 * 13 4 3 15 15 C 1.40023 * 119.94634 * 179.73352 * 2 1 3 16 16 C 1.47761 * 119.88993 * 0.02562 * 15 2 1 17 17 C 1.39939 * 120.61306 * 112.15454 * 16 15 2 18 18 C 1.38336 * 118.37712 * 179.97438 * 17 16 15 19 19 C 1.38531 * 119.52874 * 0.02562 * 18 17 16 20 20 N 1.31719 * 121.22464 * 0.02562 * 19 18 17 21 21 C 1.32588 * 121.77226 * 359.97438 * 20 19 18 22 22 C 1.48108 * 119.84280 * 180.02562 * 21 20 19 23 23 C 1.39477 * 120.13844 * 135.23138 * 22 21 20 24 24 C 1.37980 * 119.86379 * 179.72094 * 23 22 21 25 25 C 1.38350 * 120.13341 * 0.55195 * 24 23 22 26 26 C 1.38360 * 120.27378 * 359.72223 * 25 24 23 27 27 C 1.37975 * 120.13337 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47033 * 274.11269 * 1 2 3 29 29 H 1.08991 * 109.47297 * 34.12130 * 1 2 3 30 30 H 1.09005 * 109.46503 * 154.12300 * 1 2 3 31 31 H 1.08001 * 120.05496 * 359.97438 * 3 2 1 32 32 H 0.96995 * 119.99984 * 179.97438 * 8 7 5 33 33 H 1.07997 * 120.06002 * 179.97438 * 13 4 3 34 34 H 1.08003 * 119.94898 * 179.97438 * 14 13 4 35 35 H 1.07999 * 120.81820 * 359.95827 * 17 16 15 36 36 H 1.08007 * 120.23539 * 180.02562 * 18 17 16 37 37 H 1.07995 * 119.38514 * 180.02562 * 19 18 17 38 38 H 1.08006 * 120.07012 * 359.97316 * 23 22 21 39 39 H 1.07997 * 119.93500 * 180.29204 * 24 23 22 40 40 H 1.07999 * 119.86871 * 179.70014 * 25 24 23 41 41 H 1.07997 * 119.93113 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.07249 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1803 0.0000 4 6 3.5964 1.1790 -0.0059 5 6 4.3047 2.3977 -0.0124 6 1 5.3039 2.4395 -0.4202 7 6 3.7129 3.5542 0.5097 8 7 2.6652 3.4589 1.2870 9 14 4.4195 5.2332 0.0964 10 1 4.3762 5.4403 -1.3735 11 1 3.6180 6.2870 0.7691 12 1 5.8266 5.3073 0.5653 13 6 4.2955 -0.0453 -0.0056 14 6 3.6066 -1.2200 -0.0002 15 6 2.2060 -1.2133 0.0056 16 6 1.4635 -2.4908 0.0110 17 6 1.4986 -3.3401 -1.1007 18 6 0.7868 -4.5250 -1.0455 19 6 0.0658 -4.8359 0.0958 20 7 0.0440 -4.0232 1.1322 21 6 0.7075 -2.8753 1.1334 22 6 0.6536 -1.9940 2.3225 23 6 1.8203 -1.4085 2.8137 24 6 1.7627 -0.5838 3.9184 25 6 0.5525 -0.3464 4.5455 26 6 -0.6074 -0.9289 4.0665 27 6 -0.5636 -1.7504 2.9588 28 1 -0.3633 0.0737 1.0250 29 1 -0.3633 0.8507 -0.5764 30 1 -0.3632 -0.9247 -0.4486 31 1 1.6470 2.1156 -0.0004 32 1 2.2555 4.2601 1.6490 33 1 5.3754 -0.0515 -0.0105 34 1 4.1411 -2.1585 -0.0004 35 1 2.0671 -3.0768 -1.9803 36 1 0.7932 -5.2029 -1.8863 37 1 -0.4887 -5.7617 0.1365 38 1 2.7664 -1.5969 2.3279 39 1 2.6647 -0.1261 4.2969 40 1 0.5131 0.2959 5.4128 41 1 -1.5490 -0.7401 4.5605 42 1 -1.4697 -2.2043 2.5855 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239882865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:27 Heat of formation + Delta-G solvation = 59.121222 kcal Electronic energy + Delta-G solvation = -25636.400303 eV Core-core repulsion = 22316.664670 eV Total energy + Delta-G solvation = -3319.735633 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.48153 -39.44101 -39.35405 -35.93080 -33.92981 -33.71986 -33.03495 -31.70919 -31.09516 -29.97875 -27.63858 -27.08086 -24.85700 -24.27242 -23.16330 -22.25243 -22.13462 -21.28041 -18.98907 -18.37357 -17.40801 -17.19964 -16.86650 -16.74146 -15.92974 -15.71365 -15.48581 -15.38471 -14.74326 -14.47621 -14.46844 -14.31382 -14.20229 -13.91877 -13.66834 -13.53522 -13.32451 -13.13842 -13.07534 -12.78302 -12.64713 -12.37954 -12.20745 -11.93484 -11.85114 -11.48038 -11.35276 -11.05498 -10.70247 -10.39316 -10.13026 -9.76117 -9.29652 -9.19955 -8.91537 -8.61507 -6.30522 -0.13458 0.33573 0.60352 0.80321 0.97871 1.21244 1.38105 1.48087 1.52503 2.19875 2.69609 2.81455 3.08700 3.34428 3.70861 3.93160 4.05255 4.10639 4.16939 4.21834 4.31973 4.34140 4.35196 4.40747 4.58166 4.62165 4.74063 4.77208 4.79809 4.86622 4.99297 5.07809 5.09106 5.15542 5.19605 5.26614 5.33974 5.46125 5.49998 5.58831 5.68693 5.72230 5.75354 5.85589 6.05830 6.12779 6.16311 6.26756 6.39533 6.70388 6.94272 7.04914 7.10438 8.31719 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.005003 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.906524 B = 5595.581008 C = 6759.960174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.043 4.043 3 C -0.181 4.181 4 C 0.093 3.907 5 C -0.495 4.495 6 H 0.074 0.926 7 C 0.040 3.960 8 N -0.812 5.812 9 Si 0.976 3.024 10 H -0.262 1.262 11 H -0.268 1.268 12 H -0.260 1.260 13 C -0.243 4.243 14 C -0.071 4.071 15 C -0.176 4.176 16 C -0.048 4.048 17 C -0.088 4.088 18 C -0.158 4.158 19 C 0.079 3.921 20 N -0.495 5.495 21 C 0.145 3.855 22 C -0.039 4.039 23 C -0.092 4.092 24 C -0.132 4.132 25 C -0.116 4.116 26 C -0.127 4.127 27 C -0.100 4.100 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.288 0.712 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.170 0.830 37 H 0.187 0.813 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.142 0.858 41 H 0.151 0.849 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.179 -9.215 0.460 11.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.043 4.043 3 C -0.201 4.201 4 C 0.090 3.910 5 C -0.524 4.524 6 H 0.092 0.908 7 C -0.177 4.177 8 N -0.437 5.437 9 Si 0.797 3.203 10 H -0.186 1.186 11 H -0.192 1.192 12 H -0.185 1.185 13 C -0.262 4.262 14 C -0.089 4.089 15 C -0.177 4.177 16 C -0.050 4.050 17 C -0.113 4.113 18 C -0.178 4.178 19 C -0.079 4.079 20 N -0.203 5.203 21 C 0.010 3.990 22 C -0.040 4.040 23 C -0.111 4.111 24 C -0.150 4.150 25 C -0.134 4.134 26 C -0.145 4.145 27 C -0.119 4.119 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.158 0.842 36 H 0.188 0.812 37 H 0.204 0.796 38 H 0.124 0.876 39 H 0.135 0.865 40 H 0.160 0.840 41 H 0.169 0.831 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.835 -9.321 1.346 11.636 hybrid contribution 1.234 1.268 -0.888 1.979 sum -5.601 -8.053 0.458 9.820 Atomic orbital electron populations 1.20628 0.92494 1.00732 1.01136 1.19354 0.94702 0.92346 0.97881 1.20707 0.94195 0.96145 1.09043 1.17916 0.92540 0.92869 0.87643 1.19773 1.02167 0.93895 1.36518 0.90755 1.26689 0.94442 1.04589 0.91940 1.69867 1.19100 1.32851 1.21918 0.85342 0.79293 0.76047 0.79610 1.18626 1.19206 1.18467 1.20752 0.97976 0.92776 1.14740 1.20423 0.92893 0.96548 0.99020 1.17820 0.92021 0.90225 1.17671 1.19808 0.96502 0.94737 0.93991 1.21999 0.98000 0.93862 0.97488 1.22440 0.97431 0.97255 1.00629 1.23286 0.97250 0.98975 0.88424 1.67619 1.19432 1.03433 1.29813 1.20019 0.94522 0.91732 0.92710 1.18397 0.93988 0.97474 0.94153 1.21233 0.97771 0.96517 0.95618 1.21170 0.99046 0.98437 0.96383 1.21442 0.92158 0.99436 1.00368 1.21321 0.99183 0.97405 0.96557 1.21267 0.96628 0.98210 0.95804 0.92313 0.92731 0.92800 0.88433 0.90154 0.88713 0.87602 0.84180 0.81235 0.79568 0.87615 0.86454 0.84011 0.83137 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.73 8.62 71.24 0.61 -3.12 16 2 C -0.04 -1.94 5.03 -19.90 -0.10 -2.04 16 3 C -0.18 -9.38 8.27 22.46 0.19 -9.20 16 4 C 0.09 4.92 5.57 -21.28 -0.12 4.80 16 5 C -0.49 -26.26 9.03 23.37 0.21 -26.04 16 6 H 0.07 3.82 7.90 -2.91 -0.02 3.79 16 7 C 0.04 1.97 5.15 85.28 0.44 2.41 16 8 N -0.81 -41.70 10.94 21.84 0.24 -41.46 16 9 Si 0.98 37.68 29.59 68.60 2.03 39.71 16 10 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 11 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 12 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 13 C -0.24 -11.75 9.73 22.46 0.22 -11.53 16 14 C -0.07 -3.06 8.62 22.23 0.19 -2.87 16 15 C -0.18 -7.40 3.09 -19.88 -0.06 -7.47 16 16 C -0.05 -1.76 3.96 -19.75 -0.08 -1.84 16 17 C -0.09 -2.61 9.91 22.71 0.23 -2.38 16 18 C -0.16 -3.62 10.09 22.36 0.23 -3.40 16 19 C 0.08 1.94 11.17 84.78 0.95 2.88 16 20 N -0.49 -15.92 10.15 -183.88 -1.87 -17.78 16 21 C 0.15 5.24 5.81 42.25 0.25 5.48 16 22 C -0.04 -1.45 3.71 -20.05 -0.07 -1.53 16 23 C -0.09 -3.66 7.98 22.51 0.18 -3.48 16 24 C -0.13 -4.85 10.03 22.24 0.22 -4.62 16 25 C -0.12 -3.58 10.04 22.33 0.22 -3.36 16 26 C -0.13 -3.67 10.03 22.24 0.22 -3.44 16 27 C -0.10 -3.27 8.88 22.51 0.20 -3.07 16 28 H 0.06 2.36 6.67 -2.39 -0.02 2.35 16 29 H 0.05 2.09 8.11 -2.39 -0.02 2.08 16 30 H 0.05 2.02 6.75 -2.38 -0.02 2.00 16 31 H 0.10 5.36 6.18 -2.91 -0.02 5.34 16 32 H 0.29 13.45 8.29 -92.71 -0.77 12.68 16 33 H 0.09 4.38 8.06 -2.91 -0.02 4.35 16 34 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 35 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 36 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.19 3.05 8.06 -2.91 -0.02 3.02 16 38 H 0.11 4.56 5.97 -2.91 -0.02 4.54 16 39 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 40 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 42 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -61.12 349.11 5.55 -55.57 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: 1.03 Total: 37.77 kcal Atomic # 6 Polarization: -77.93 SS G_CDS: 4.12 Total: -73.81 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -1.63 Total: -59.24 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -61.12 5.55 -55.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239882865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.687 kcal (2) G-P(sol) polarization free energy of solvation -61.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds