Wall clock time and date at job start Tue Mar 31 2020 10:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86801 * 120.00111 * 2 1 4 4 H 1.48505 * 109.47209 * 270.00383 * 3 2 1 5 5 H 1.48501 * 109.47193 * 30.00400 * 3 2 1 6 6 H 1.48501 * 109.47132 * 150.00610 * 3 2 1 7 7 C 1.38635 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99759 * 359.97438 * 7 2 1 9 9 O 1.34813 * 120.00565 * 179.97438 * 7 2 1 10 10 C 1.35743 * 117.00142 * 185.05362 * 9 7 2 11 11 C 1.39447 * 120.38504 * 354.52177 * 10 9 7 12 12 C 1.38182 * 118.46320 * 179.97438 * 11 10 9 13 13 C 1.39444 * 119.15182 * 359.97438 * 12 11 10 14 14 C 1.48305 * 119.66053 * 179.97438 * 13 12 11 15 15 C 1.40926 * 126.24022 * 5.03265 * 14 13 12 16 16 N 1.30645 * 108.07775 * 179.97438 * 15 14 13 17 17 N 1.40003 * 108.55371 * 359.97438 * 16 15 14 18 18 C 1.46498 * 125.87627 * 179.97438 * 17 16 15 19 19 C 1.53180 * 109.54251 * 95.02728 * 18 17 16 20 20 C 1.53094 * 109.16486 * 176.85059 * 19 18 17 21 21 O 1.42904 * 109.41196 * 302.39312 * 20 19 18 22 22 C 1.42893 * 114.09997 * 61.15834 * 21 20 19 23 23 C 1.53090 * 109.41715 * 298.83882 * 22 21 20 24 24 C 1.34747 * 108.24821 * 0.24314 * 17 16 15 25 25 N 1.32677 * 120.68505 * 0.25823 * 13 12 11 26 26 C 1.31738 * 121.67317 * 359.47130 * 25 13 12 27 27 H 0.97000 * 119.99972 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.76354 * 359.95249 * 11 10 9 29 29 H 1.08001 * 120.43096 * 179.97438 * 12 11 10 30 30 H 1.07994 * 125.95770 * 359.94967 * 15 14 13 31 31 H 1.09010 * 109.54189 * 334.85153 * 18 17 16 32 32 H 1.08999 * 109.52365 * 56.94025 * 19 18 17 33 33 H 1.09007 * 109.56956 * 296.78548 * 19 18 17 34 34 H 1.08995 * 109.47741 * 182.40686 * 20 19 18 35 35 H 1.09007 * 109.47929 * 62.37227 * 20 19 18 36 36 H 1.08999 * 109.48697 * 58.82596 * 22 21 20 37 37 H 1.09003 * 109.48101 * 178.85846 * 22 21 20 38 38 H 1.08999 * 109.52281 * 297.70685 * 23 22 21 39 39 H 1.09004 * 109.57992 * 177.54422 * 23 22 21 40 40 H 1.07999 * 126.19970 * 179.72485 * 24 17 16 41 41 H 1.08000 * 119.60684 * 180.26700 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4401 0.6999 7 6 2.0088 -1.2006 -0.0005 8 1 1.4688 -2.1359 -0.0005 9 8 3.3570 -1.2007 -0.0011 10 6 3.9731 -2.4054 -0.1081 11 6 3.2264 -3.5831 -0.0969 12 6 3.8943 -4.7875 -0.2090 13 6 5.2836 -4.7852 -0.3292 14 6 6.0120 -6.0715 -0.4495 15 6 5.4311 -7.3510 -0.5564 16 7 6.3955 -8.2280 -0.6436 17 7 7.6196 -7.5502 -0.5970 18 6 8.9462 -8.1680 -0.6648 19 6 9.4490 -8.1447 -2.1116 20 6 10.8668 -8.7202 -2.1602 21 8 11.7165 -7.9635 -1.2957 22 6 11.3223 -7.9879 0.0776 23 6 9.9229 -7.3830 0.2162 24 6 7.3677 -6.2323 -0.4732 25 7 5.9611 -3.6445 -0.3314 26 6 5.3544 -2.4794 -0.2316 27 1 -0.4850 0.8400 0.0004 28 1 2.1509 -3.5543 -0.0025 29 1 3.3475 -5.7189 -0.2035 30 1 4.3733 -7.5686 -0.5643 31 1 8.8865 -9.1991 -0.3161 32 1 9.4599 -7.1178 -2.4769 33 1 8.7898 -8.7469 -2.7370 34 1 11.2459 -8.6667 -3.1807 35 1 10.8485 -9.7599 -1.8331 36 1 11.3100 -9.0179 0.4341 37 1 12.0297 -7.4068 0.6692 38 1 9.9434 -6.3407 -0.1021 39 1 9.6016 -7.4400 1.2563 40 1 8.1046 -5.4456 -0.4063 41 1 5.9385 -1.5711 -0.2412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240074444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:56 Heat of formation + Delta-G solvation = 38.095003 kcal Electronic energy + Delta-G solvation = -24845.067377 eV Core-core repulsion = 21113.570715 eV Total energy + Delta-G solvation = -3731.496662 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34777 -39.72101 -39.36550 -37.30416 -35.03129 -32.57951 -31.70832 -31.56987 -31.19541 -30.48265 -28.25079 -25.76891 -24.87415 -24.13775 -23.06601 -22.49456 -21.34462 -20.39244 -19.77115 -18.03655 -17.74202 -17.25139 -16.54329 -16.28374 -15.48859 -15.36633 -15.23316 -15.02582 -14.79587 -14.32272 -14.21471 -13.83533 -13.70850 -13.43591 -12.96780 -12.89689 -12.63252 -12.52842 -12.41324 -12.17524 -11.94493 -11.84274 -11.51302 -11.35984 -10.98938 -10.97205 -10.63644 -10.35376 -10.17769 -9.75550 -9.39303 -9.20337 -9.07235 -8.87680 -8.65149 -7.16120 -6.53917 -4.19076 1.58266 1.98043 2.11609 2.34116 3.10261 3.18297 3.22232 3.34157 3.37968 3.99242 4.14386 4.20824 4.39110 4.50850 4.59988 4.62965 4.65853 4.69500 4.80169 4.95609 5.00745 5.04853 5.10970 5.14065 5.18729 5.26639 5.45679 5.50414 5.51473 5.63578 5.68769 5.78921 5.80041 6.05530 6.24166 6.44523 6.63239 6.67194 6.85125 6.97192 7.05620 7.28111 7.62361 7.74342 7.86945 8.67262 8.80124 9.38818 10.52940 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029535 B = 0.002390 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.797896 B =11711.881629 C =12358.198664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.205 6.205 10 C 0.106 3.894 11 C -0.181 4.181 12 C -0.111 4.111 13 C 0.104 3.896 14 C -0.163 4.163 15 C 0.062 3.938 16 N -0.303 5.303 17 N -0.372 5.372 18 C 0.166 3.834 19 C -0.169 4.169 20 C 0.066 3.934 21 O -0.380 6.380 22 C 0.067 3.933 23 C -0.170 4.170 24 C 0.078 3.922 25 N -0.446 5.446 26 C 0.035 3.965 27 H 0.282 0.718 28 H 0.143 0.857 29 H 0.121 0.879 30 H 0.184 0.816 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.177 0.823 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.880 -16.241 -1.173 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.108 6.108 10 C 0.051 3.949 11 C -0.207 4.207 12 C -0.131 4.131 13 C -0.033 4.033 14 C -0.175 4.175 15 C -0.126 4.126 16 N -0.123 5.123 17 N -0.154 5.154 18 C 0.064 3.936 19 C -0.208 4.208 20 C -0.012 4.012 21 O -0.298 6.298 22 C -0.010 4.010 23 C -0.208 4.208 24 C -0.068 4.068 25 N -0.156 5.156 26 C -0.127 4.127 27 H 0.092 0.908 28 H 0.160 0.840 29 H 0.139 0.861 30 H 0.201 0.799 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.194 0.806 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 20.200 -17.089 -1.402 26.496 hybrid contribution -1.571 1.485 0.254 2.176 sum 18.630 -15.604 -1.148 24.328 Atomic orbital electron populations 1.69643 1.05643 1.28811 1.46808 1.24494 0.95063 0.99032 0.95338 0.86160 0.80391 0.81145 0.79141 1.19705 1.20643 1.18141 1.20778 0.76724 0.96766 1.52423 0.87572 1.83563 1.22768 1.25187 1.79257 1.20241 0.93172 0.86156 0.95352 1.21590 1.01570 0.91541 1.06043 1.21607 0.93995 0.97906 0.99605 1.18402 0.89553 0.89512 1.05829 1.18528 0.91562 0.92144 1.15293 1.23922 0.99083 0.90174 0.99377 1.77156 0.88779 1.21184 1.25181 1.48476 1.05193 1.04627 1.57118 1.21181 0.77848 0.98215 0.96344 1.22701 0.97786 1.04096 0.96170 1.22585 0.88772 0.94368 0.95464 1.87980 1.51811 1.72398 1.17653 1.22558 0.94509 1.00606 0.83358 1.22662 0.95430 1.01675 1.01066 1.22453 0.97410 0.86400 1.00540 1.67361 1.39597 0.97362 1.11299 1.21691 0.89462 0.95423 1.06095 0.90806 0.83956 0.86070 0.79898 0.88109 0.90004 0.89753 0.88037 0.92654 0.92623 0.87825 0.89504 0.89515 0.80637 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.37 13.96 55.48 0.77 -23.60 16 2 C 0.07 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 20.87 28.62 -169.99 -4.86 16.00 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.26 -5.92 7.11 56.52 0.40 -5.51 16 7 C -0.39 -10.58 9.95 30.88 0.31 -10.28 16 8 H 0.11 2.92 5.48 -52.49 -0.29 2.63 16 9 O -0.20 -5.17 8.59 0.12 0.00 -5.16 16 10 C 0.11 2.37 6.67 -38.90 -0.26 2.11 16 11 C -0.18 -3.75 9.25 -39.15 -0.36 -4.12 16 12 C -0.11 -1.98 9.60 -39.15 -0.38 -2.36 16 13 C 0.10 1.88 6.75 -82.91 -0.56 1.32 16 14 C -0.16 -2.55 6.05 -105.35 -0.64 -3.19 16 15 C 0.06 0.87 11.40 -17.04 -0.19 0.67 16 16 N -0.30 -4.27 12.54 30.81 0.39 -3.89 16 17 N -0.37 -4.60 3.52 -54.41 -0.19 -4.79 16 18 C 0.17 1.47 3.29 -67.75 -0.22 1.25 16 19 C -0.17 -1.34 5.75 -26.59 -0.15 -1.49 16 20 C 0.07 0.42 6.84 37.21 0.25 0.67 16 21 O -0.38 -3.09 10.76 -35.23 -0.38 -3.47 16 22 C 0.07 0.41 6.84 37.20 0.25 0.66 16 23 C -0.17 -1.24 5.11 -26.59 -0.14 -1.38 16 24 C 0.08 1.07 10.29 -16.88 -0.17 0.90 16 25 N -0.45 -8.52 10.06 -9.61 -0.10 -8.62 16 26 C 0.03 0.70 11.14 -17.36 -0.19 0.51 16 27 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.14 3.01 5.75 -52.49 -0.30 2.71 16 29 H 0.12 1.77 7.05 -52.49 -0.37 1.40 16 30 H 0.18 2.09 7.35 -52.49 -0.39 1.70 16 31 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.70 6.99 -51.93 -0.36 0.33 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.18 2.19 7.16 -52.49 -0.38 1.82 16 41 H 0.15 2.70 8.06 -52.49 -0.42 2.28 16 LS Contribution 345.09 15.07 5.20 5.20 Total: -1.00 -30.85 345.09 -6.74 -37.59 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.02 Total: 3.78 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -2.55 Total: -13.05 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.87 Total: -40.89 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.38 Total: -8.63 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.86 Total: 16.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.85 -6.74 -37.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240074444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.687 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds