Wall clock time and date at job start Tue Mar 31 2020 10:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86801 * 120.00111 * 2 1 4 4 H 1.48505 * 109.47209 * 270.00383 * 3 2 1 5 5 H 1.48501 * 109.47193 * 30.00400 * 3 2 1 6 6 H 1.48501 * 109.47132 * 150.00610 * 3 2 1 7 7 C 1.38635 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99759 * 359.97438 * 7 2 1 9 9 O 1.34813 * 120.00565 * 179.97438 * 7 2 1 10 10 C 1.35743 * 117.00142 * 185.05362 * 9 7 2 11 11 C 1.39447 * 120.38504 * 354.52177 * 10 9 7 12 12 C 1.38182 * 118.46320 * 179.97438 * 11 10 9 13 13 C 1.39444 * 119.15182 * 359.97438 * 12 11 10 14 14 C 1.48305 * 119.66053 * 179.97438 * 13 12 11 15 15 C 1.40926 * 126.24022 * 5.03265 * 14 13 12 16 16 N 1.30645 * 108.07775 * 179.97438 * 15 14 13 17 17 N 1.40003 * 108.55371 * 359.97438 * 16 15 14 18 18 C 1.46498 * 125.87627 * 179.97438 * 17 16 15 19 19 C 1.53180 * 109.54251 * 95.02728 * 18 17 16 20 20 C 1.53094 * 109.16486 * 176.85059 * 19 18 17 21 21 O 1.42904 * 109.41196 * 302.39312 * 20 19 18 22 22 C 1.42893 * 114.09997 * 61.15834 * 21 20 19 23 23 C 1.53090 * 109.41715 * 298.83882 * 22 21 20 24 24 C 1.34747 * 108.24821 * 0.24314 * 17 16 15 25 25 N 1.32677 * 120.68505 * 0.25823 * 13 12 11 26 26 C 1.31738 * 121.67317 * 359.47130 * 25 13 12 27 27 H 0.97000 * 119.99972 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.76354 * 359.95249 * 11 10 9 29 29 H 1.08001 * 120.43096 * 179.97438 * 12 11 10 30 30 H 1.07994 * 125.95770 * 359.94967 * 15 14 13 31 31 H 1.09010 * 109.54189 * 334.85153 * 18 17 16 32 32 H 1.08999 * 109.52365 * 56.94025 * 19 18 17 33 33 H 1.09007 * 109.56956 * 296.78548 * 19 18 17 34 34 H 1.08995 * 109.47741 * 182.40686 * 20 19 18 35 35 H 1.09007 * 109.47929 * 62.37227 * 20 19 18 36 36 H 1.08999 * 109.48697 * 58.82596 * 22 21 20 37 37 H 1.09003 * 109.48101 * 178.85846 * 22 21 20 38 38 H 1.08999 * 109.52281 * 297.70685 * 23 22 21 39 39 H 1.09004 * 109.57992 * 177.54422 * 23 22 21 40 40 H 1.07999 * 126.19970 * 179.72485 * 24 17 16 41 41 H 1.08000 * 119.60684 * 180.26700 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4401 0.6999 7 6 2.0088 -1.2006 -0.0005 8 1 1.4688 -2.1359 -0.0005 9 8 3.3570 -1.2007 -0.0011 10 6 3.9731 -2.4054 -0.1081 11 6 3.2264 -3.5831 -0.0969 12 6 3.8943 -4.7875 -0.2090 13 6 5.2836 -4.7852 -0.3292 14 6 6.0120 -6.0715 -0.4495 15 6 5.4311 -7.3510 -0.5564 16 7 6.3955 -8.2280 -0.6436 17 7 7.6196 -7.5502 -0.5970 18 6 8.9462 -8.1680 -0.6648 19 6 9.4490 -8.1447 -2.1116 20 6 10.8668 -8.7202 -2.1602 21 8 11.7165 -7.9635 -1.2957 22 6 11.3223 -7.9879 0.0776 23 6 9.9229 -7.3830 0.2162 24 6 7.3677 -6.2323 -0.4732 25 7 5.9611 -3.6445 -0.3314 26 6 5.3544 -2.4794 -0.2316 27 1 -0.4850 0.8400 0.0004 28 1 2.1509 -3.5543 -0.0025 29 1 3.3475 -5.7189 -0.2035 30 1 4.3733 -7.5686 -0.5643 31 1 8.8865 -9.1991 -0.3161 32 1 9.4599 -7.1178 -2.4769 33 1 8.7898 -8.7469 -2.7370 34 1 11.2459 -8.6667 -3.1807 35 1 10.8485 -9.7599 -1.8331 36 1 11.3100 -9.0179 0.4341 37 1 12.0297 -7.4068 0.6692 38 1 9.9434 -6.3407 -0.1021 39 1 9.6016 -7.4400 1.2563 40 1 8.1046 -5.4456 -0.4063 41 1 5.9385 -1.5711 -0.2412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240074444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:56 Heat of formation + Delta-G solvation = 18.578766 kcal Electronic energy + Delta-G solvation = -24845.913665 eV Core-core repulsion = 21113.570715 eV Total energy + Delta-G solvation = -3732.342949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.40619 -41.20496 -40.15077 -38.98275 -35.80972 -34.52470 -33.07539 -32.64388 -32.23093 -31.44969 -29.63560 -27.40091 -25.89666 -24.72382 -24.55222 -23.87580 -22.32901 -21.57992 -20.71956 -19.82670 -19.21825 -18.55229 -17.19098 -17.09921 -17.06257 -16.40111 -16.17511 -16.13582 -15.88444 -15.77165 -15.59081 -14.98422 -14.68882 -14.64311 -14.47582 -14.39780 -14.02079 -13.89621 -13.62945 -13.40154 -13.12925 -12.77152 -12.57987 -12.42191 -12.13037 -12.02747 -11.82535 -11.67875 -11.43437 -11.02932 -10.72798 -10.59372 -10.45649 -10.43537 -10.17184 -8.65285 -8.52055 -6.23580 0.15157 0.39667 0.95040 1.34508 1.37437 1.41545 1.54247 1.86155 2.28077 2.83428 2.89879 2.94151 3.21007 3.26724 3.52063 3.57801 3.72218 3.85429 3.87242 3.91970 4.04069 4.15099 4.18995 4.24570 4.35814 4.45651 4.48417 4.54272 4.64958 4.70193 4.76735 4.86916 4.94550 4.96868 5.00951 5.08971 5.23258 5.33664 5.52458 5.59582 5.75611 5.99425 6.02657 6.18573 6.65357 6.81188 7.09302 7.50694 8.58714 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029535 B = 0.002390 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.797896 B =11711.881629 C =12358.198664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.401 4.401 8 H 0.085 0.915 9 O -0.230 6.230 10 C 0.072 3.928 11 C -0.184 4.184 12 C -0.112 4.112 13 C 0.127 3.873 14 C -0.200 4.200 15 C 0.066 3.934 16 N -0.317 5.317 17 N -0.364 5.364 18 C 0.157 3.843 19 C -0.162 4.162 20 C 0.067 3.933 21 O -0.399 6.399 22 C 0.067 3.933 23 C -0.164 4.164 24 C 0.094 3.906 25 N -0.453 5.453 26 C 0.042 3.958 27 H 0.286 0.714 28 H 0.130 0.870 29 H 0.157 0.843 30 H 0.206 0.794 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.188 0.812 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.681 -18.086 -1.223 28.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.478 4.478 8 H 0.103 0.897 9 O -0.135 6.135 10 C 0.020 3.980 11 C -0.210 4.210 12 C -0.131 4.131 13 C -0.010 4.010 14 C -0.212 4.212 15 C -0.121 4.121 16 N -0.136 5.136 17 N -0.144 5.144 18 C 0.057 3.943 19 C -0.201 4.201 20 C -0.010 4.010 21 O -0.318 6.318 22 C -0.010 4.010 23 C -0.203 4.203 24 C -0.055 4.055 25 N -0.163 5.163 26 C -0.118 4.118 27 H 0.096 0.904 28 H 0.148 0.852 29 H 0.175 0.825 30 H 0.223 0.777 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.204 0.796 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 23.052 -18.986 -1.457 29.899 hybrid contribution -2.144 1.620 0.232 2.697 sum 20.908 -17.365 -1.224 27.207 Atomic orbital electron populations 1.69722 1.06926 1.29778 1.49318 1.25266 0.95852 1.02211 0.95270 0.85241 0.79003 0.77350 0.79346 1.19093 1.19365 1.18265 1.20716 0.77847 0.96317 1.52883 0.89726 1.83519 1.21429 1.26427 1.82143 1.20659 0.94225 0.86020 0.97079 1.21695 1.01221 0.92438 1.05684 1.21925 0.94239 0.98232 0.98748 1.18918 0.89887 0.90272 1.01968 1.18516 0.92444 0.91565 1.18697 1.24268 1.00263 0.89276 0.98337 1.77156 0.89346 1.21563 1.25580 1.48828 1.06012 1.04207 1.55390 1.21569 0.76469 0.98852 0.97459 1.22643 0.98884 1.03326 0.95268 1.22670 0.87378 0.94899 0.96031 1.87964 1.52313 1.72875 1.18622 1.22687 0.93754 1.01777 0.82774 1.22647 0.95834 1.01028 1.00794 1.22645 0.97104 0.87312 0.98401 1.67499 1.39388 0.97378 1.11997 1.22002 0.88659 0.96552 1.04584 0.90439 0.85198 0.82517 0.77720 0.87007 0.91425 0.90031 0.87026 0.90928 0.90939 0.86599 0.90333 0.89138 0.79551 0.81429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.20 13.96 21.61 0.30 -52.90 16 2 C 0.01 0.75 5.49 84.83 0.47 1.22 16 3 Si 0.97 43.84 28.62 68.60 1.96 45.80 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.40 -22.67 9.95 67.91 0.68 -21.99 16 8 H 0.09 4.96 5.48 -2.91 -0.02 4.94 16 9 O -0.23 -11.91 8.59 -22.49 -0.19 -12.11 16 10 C 0.07 3.28 6.67 22.71 0.15 3.43 16 11 C -0.18 -7.72 9.25 22.55 0.21 -7.51 16 12 C -0.11 -3.84 9.60 22.55 0.22 -3.62 16 13 C 0.13 4.35 6.75 41.99 0.28 4.64 16 14 C -0.20 -5.76 6.05 -20.34 -0.12 -5.88 16 15 C 0.07 1.66 11.40 85.53 0.98 2.64 16 16 N -0.32 -8.07 12.54 -56.42 -0.71 -8.78 16 17 N -0.36 -8.05 3.52 -326.05 -1.15 -9.20 16 18 C 0.16 2.36 3.29 45.11 0.15 2.51 16 19 C -0.16 -2.21 5.75 30.69 0.18 -2.03 16 20 C 0.07 0.68 6.84 72.01 0.49 1.17 16 21 O -0.40 -5.43 10.76 -148.98 -1.60 -7.03 16 22 C 0.07 0.62 6.84 72.01 0.49 1.11 16 23 C -0.16 -1.97 5.11 30.68 0.16 -1.81 16 24 C 0.09 2.35 10.29 83.85 0.86 3.21 16 25 N -0.45 -16.57 10.06 -184.32 -1.85 -18.43 16 26 C 0.04 1.65 11.14 84.86 0.95 2.60 16 27 H 0.29 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.13 5.76 5.75 -2.91 -0.02 5.75 16 29 H 0.16 4.18 7.05 -2.91 -0.02 4.16 16 30 H 0.21 4.01 7.35 -2.91 -0.02 3.99 16 31 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.07 0.44 8.14 -2.39 -0.02 0.43 16 37 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 1.08 6.99 -2.39 -0.02 1.07 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.19 4.20 7.16 -2.91 -0.02 4.18 16 41 H 0.17 5.87 8.06 -2.91 -0.02 5.85 16 Total: -1.00 -67.80 345.09 3.95 -63.85 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.06 Total: 19.12 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 6.13 Total: -20.33 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -3.41 Total: -89.30 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -1.80 Total: -19.14 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.96 Total: 45.80 kcal Total: -67.80 3.95 -63.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240074444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.430 kcal (2) G-P(sol) polarization free energy of solvation -67.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds