Wall clock time and date at job start Tue Mar 31 2020 11:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37930 * 119.96651 * 2 1 4 4 C 1.39363 * 119.93068 * 180.02562 * 3 2 1 5 5 C 1.48355 * 120.06003 * 179.97438 * 4 3 2 6 6 C 1.39016 * 120.41799 * 130.00191 * 5 4 3 7 7 C 1.40960 * 118.12683 * 180.02562 * 6 5 4 8 8 C 1.41374 * 120.56746 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99590 * 153.74256 * 8 7 6 10 10 C 1.39882 * 120.00607 * 333.74492 * 8 7 6 11 11 N 1.30871 * 119.99670 * 345.17300 * 10 8 7 12 12 Si 1.86799 * 120.00522 * 165.17544 * 10 8 7 13 13 H 1.48500 * 109.46788 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47553 * 119.99547 * 12 10 8 15 15 H 1.48507 * 109.47129 * 240.00030 * 12 10 8 16 16 C 1.40806 * 118.85394 * 359.97438 * 7 6 5 17 17 N 1.31507 * 120.69948 * 0.02562 * 16 7 6 18 18 C 1.32153 * 122.07679 * 359.97438 * 17 16 7 19 19 F 1.35102 * 119.45561 * 179.97438 * 18 17 16 20 20 C 1.39399 * 119.87191 * 0.25004 * 4 3 2 21 21 C 1.37885 * 119.93218 * 359.51867 * 20 4 3 22 22 C 1.38816 * 119.96785 * 180.02562 * 2 1 3 23 23 O 1.35874 * 119.93235 * 359.97438 * 22 2 1 24 24 C 1.42904 * 117.00144 * 174.89527 * 23 22 2 25 25 C 1.53002 * 109.46751 * 83.52919 * 24 23 22 26 26 C 1.52999 * 109.47442 * 203.53233 * 24 23 22 27 27 H 1.09002 * 109.46979 * 90.00842 * 1 2 3 28 28 H 1.09002 * 109.47022 * 209.99770 * 1 2 3 29 29 H 1.08992 * 109.47070 * 329.99869 * 1 2 3 30 30 H 1.07995 * 120.03218 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.93835 * 0.04389 * 6 5 4 32 32 H 0.97004 * 119.99824 * 180.02562 * 11 10 8 33 33 H 1.08002 * 119.64567 * 179.72623 * 16 7 6 34 34 H 1.07999 * 120.03051 * 179.72065 * 20 4 3 35 35 H 1.08000 * 119.96873 * 180.20945 * 21 20 4 36 36 H 1.09001 * 109.46864 * 323.54107 * 24 23 22 37 37 H 1.09000 * 109.47251 * 300.00944 * 25 24 23 38 38 H 1.09007 * 109.46659 * 60.00572 * 25 24 23 39 39 H 1.09002 * 109.47001 * 180.02562 * 25 24 23 40 40 H 1.09000 * 109.46777 * 60.00039 * 26 24 23 41 41 H 1.09002 * 109.47073 * 180.02562 * 26 24 23 42 42 H 1.09000 * 109.47078 * 300.00136 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1949 0.0000 4 6 3.5896 1.1940 -0.0005 5 6 4.3335 2.4776 -0.0011 6 6 5.3536 2.7003 0.9168 7 6 6.0281 3.9373 0.8734 8 6 7.0732 4.2186 1.7830 9 1 7.8466 4.9234 1.5157 10 6 7.1057 3.5840 3.0292 11 7 6.0431 2.9639 3.4756 12 14 8.6655 3.6215 4.0562 13 1 9.7166 4.3807 3.3322 14 1 8.3859 4.2804 5.3573 15 1 9.1344 2.2329 4.2952 16 6 5.6431 4.8878 -0.0914 17 7 4.6709 4.6289 -0.9384 18 6 4.0171 3.4805 -0.9265 19 9 3.0265 3.2707 -1.8209 20 6 4.2832 -0.0152 -0.0064 21 6 3.5889 -1.2065 -0.0015 22 6 2.2004 -1.2026 -0.0005 23 8 1.5190 -2.3781 -0.0005 24 6 2.2908 -3.5754 -0.1144 25 6 2.8133 -3.9785 1.2660 26 6 1.4134 -4.6965 -0.6750 27 1 -0.3633 -0.0002 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6560 2.1302 0.0004 31 1 5.6218 1.9468 1.6424 32 1 6.0655 2.5242 4.3399 33 1 6.1483 5.8415 -0.1332 34 1 5.3631 -0.0188 -0.0113 35 1 4.1257 -2.1437 -0.0026 36 1 3.1325 -3.4027 -0.7851 37 1 3.4383 -3.1797 1.6654 38 1 1.9717 -4.1511 1.9368 39 1 3.4024 -4.8915 1.1791 40 1 1.0412 -4.4092 -1.6584 41 1 2.0020 -5.6098 -0.7614 42 1 0.5718 -4.8691 -0.0041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241222121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:34 Heat of formation + Delta-G solvation = -49.591386 kcal Electronic energy + Delta-G solvation = -25615.226823 eV Core-core repulsion = 21860.007833 eV Total energy + Delta-G solvation = -3755.218990 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.56170 -40.18898 -38.49931 -37.33678 -34.17637 -33.66567 -32.30103 -31.52968 -30.33703 -28.24684 -27.41746 -26.38362 -25.51234 -23.36511 -22.62046 -21.60772 -20.59779 -20.08691 -17.96008 -17.47671 -16.63076 -16.12917 -15.64234 -15.47768 -15.36378 -14.79410 -14.67900 -14.38368 -13.95600 -13.59410 -13.40419 -13.00885 -12.79920 -12.59377 -12.57213 -12.47255 -12.29654 -12.18818 -12.12547 -12.00850 -11.77667 -11.62035 -11.46614 -11.25261 -11.17573 -11.06228 -10.74098 -10.66792 -10.41339 -10.05749 -9.52327 -8.68364 -8.43992 -8.38976 -7.84131 -7.26472 -7.00266 -4.64015 1.58440 1.70492 2.41848 2.69645 2.95215 2.98896 3.01253 3.27447 3.74483 4.10078 4.38610 4.63398 4.75730 4.90988 5.05828 5.08851 5.14838 5.30990 5.33227 5.35761 5.38824 5.53835 5.58619 5.67222 5.72107 5.84823 5.88317 5.91761 5.94995 6.02027 6.11662 6.19393 6.45907 6.50155 6.63829 6.64025 6.74047 6.91001 6.96586 7.09958 7.13449 7.46753 7.61894 7.65694 7.76658 8.21319 8.47171 8.49066 9.21072 9.91500 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013257 B = 0.003956 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.558176 B = 7076.635552 C = 8630.526806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.120 4.120 3 C -0.065 4.065 4 C -0.045 4.045 5 C -0.097 4.097 6 C -0.095 4.095 7 C 0.055 3.945 8 C -0.442 4.442 9 H 0.088 0.912 10 C 0.072 3.928 11 N -0.787 5.787 12 Si 0.915 3.085 13 H -0.258 1.258 14 H -0.272 1.272 15 H -0.270 1.270 16 C 0.011 3.989 17 N -0.491 5.491 18 C 0.165 3.835 19 F -0.145 7.145 20 C -0.072 4.072 21 C -0.207 4.207 22 C 0.117 3.883 23 O -0.310 6.310 24 C 0.077 3.923 25 C -0.182 4.182 26 C -0.146 4.146 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.127 0.873 31 H 0.138 0.862 32 H 0.286 0.714 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 -12.907 -1.603 13.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.083 4.083 4 C -0.046 4.046 5 C -0.101 4.101 6 C -0.121 4.121 7 C 0.051 3.949 8 C -0.472 4.472 9 H 0.106 0.894 10 C -0.147 4.147 11 N -0.411 5.411 12 Si 0.739 3.261 13 H -0.181 1.181 14 H -0.197 1.197 15 H -0.195 1.195 16 C -0.150 4.150 17 N -0.202 5.202 18 C 0.011 3.989 19 F -0.125 7.125 20 C -0.091 4.091 21 C -0.225 4.225 22 C 0.073 3.927 23 O -0.225 6.225 24 C 0.020 3.980 25 C -0.239 4.239 26 C -0.204 4.204 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.145 0.855 31 H 0.156 0.844 32 H 0.097 0.903 33 H 0.156 0.844 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.295 -12.478 -2.022 13.705 hybrid contribution 1.018 -0.668 1.087 1.633 sum -4.277 -13.147 -0.934 13.857 Atomic orbital electron populations 1.20549 0.90873 1.02319 1.01884 1.19090 0.96161 0.90106 1.06660 1.20954 0.93214 0.96761 0.97335 1.18645 0.92592 0.92413 1.00955 1.19119 0.99701 0.92884 0.98399 1.21724 0.95287 0.97632 0.97409 1.18502 0.92820 0.90927 0.92661 1.19577 1.07830 1.21623 0.98133 0.89410 1.26000 0.97427 0.92964 0.98313 1.69786 1.27828 1.24825 1.18675 0.86132 0.81399 0.79206 0.79380 1.18108 1.19712 1.19529 1.22323 0.96740 0.99118 0.96868 1.66276 1.08446 1.19849 1.25661 1.17556 0.94086 0.93109 0.94174 1.91402 1.59195 1.94659 1.67215 1.20989 0.99764 0.90823 0.97484 1.21085 0.92824 0.98897 1.09710 1.18718 0.90257 0.85188 0.98548 1.86056 1.35948 1.12130 1.88371 1.22361 0.94577 0.83859 0.97183 1.22405 1.02068 1.02251 0.97172 1.21829 1.00320 0.96508 1.01707 0.91774 0.91556 0.91873 0.85510 0.84425 0.90311 0.84417 0.85787 0.85673 0.91024 0.91497 0.91581 0.91309 0.91732 0.90775 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 9.79 36.01 0.35 -1.01 16 2 C -0.12 -2.00 5.89 -104.52 -0.62 -2.61 16 3 C -0.06 -1.22 8.51 -39.28 -0.33 -1.56 16 4 C -0.05 -0.93 5.33 -104.88 -0.56 -1.48 16 5 C -0.10 -2.27 5.48 -104.75 -0.57 -2.85 16 6 C -0.10 -2.32 8.26 -38.26 -0.32 -2.64 16 7 C 0.06 1.38 5.57 -106.70 -0.59 0.79 16 8 C -0.44 -10.64 9.08 -37.77 -0.34 -10.98 16 9 H 0.09 1.99 7.89 -52.48 -0.41 1.58 16 10 C 0.07 1.65 5.21 -17.35 -0.09 1.56 16 11 N -0.79 -18.78 10.94 55.54 0.61 -18.17 16 12 Si 0.92 17.09 29.58 -169.99 -5.03 12.06 16 13 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 14 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 15 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 16 C 0.01 0.26 10.96 -16.72 -0.18 0.08 16 17 N -0.49 -12.31 10.33 -12.58 -0.13 -12.44 16 18 C 0.16 4.04 8.30 -16.72 -0.14 3.90 16 19 F -0.14 -3.40 15.90 2.25 0.04 -3.36 16 20 C -0.07 -1.32 9.53 -39.28 -0.37 -1.69 16 21 C -0.21 -3.26 8.17 -39.48 -0.32 -3.58 16 22 C 0.12 1.88 6.56 -39.14 -0.26 1.62 16 23 O -0.31 -4.34 8.84 -19.34 -0.17 -4.51 16 24 C 0.08 0.82 2.85 -26.73 -0.08 0.74 16 25 C -0.18 -1.77 9.14 37.16 0.34 -1.43 16 26 C -0.15 -1.20 9.56 37.16 0.36 -0.85 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.86 7.52 -51.93 -0.39 0.47 16 29 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 30 H 0.13 2.39 7.79 -52.49 -0.41 1.98 16 31 H 0.14 3.40 6.29 -52.49 -0.33 3.07 16 32 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 33 H 0.14 3.00 8.06 -52.49 -0.42 2.58 16 34 H 0.12 2.16 8.05 -52.49 -0.42 1.73 16 35 H 0.13 1.64 5.36 -52.49 -0.28 1.35 16 36 H 0.07 0.75 6.38 -51.93 -0.33 0.42 16 37 H 0.07 0.75 6.77 -51.93 -0.35 0.39 16 38 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -27.36 354.43 -8.52 -35.88 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.44 Total: 7.20 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -3.73 Total: -22.00 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.48 Total: -30.61 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.17 Total: -4.51 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.04 Total: -3.36 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.36 -8.52 -35.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241222121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.713 kcal (2) G-P(sol) polarization free energy of solvation -27.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds