Wall clock time and date at job start Tue Mar 31 2020 11:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37930 * 119.96651 * 2 1 4 4 C 1.39363 * 119.93068 * 180.02562 * 3 2 1 5 5 C 1.48355 * 120.06003 * 179.97438 * 4 3 2 6 6 C 1.39016 * 120.41799 * 130.00191 * 5 4 3 7 7 C 1.40960 * 118.12683 * 180.02562 * 6 5 4 8 8 C 1.41374 * 120.56746 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99590 * 153.74256 * 8 7 6 10 10 C 1.39882 * 120.00607 * 333.74492 * 8 7 6 11 11 N 1.30871 * 119.99670 * 345.17300 * 10 8 7 12 12 Si 1.86799 * 120.00522 * 165.17544 * 10 8 7 13 13 H 1.48500 * 109.46788 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47553 * 119.99547 * 12 10 8 15 15 H 1.48507 * 109.47129 * 240.00030 * 12 10 8 16 16 C 1.40806 * 118.85394 * 359.97438 * 7 6 5 17 17 N 1.31507 * 120.69948 * 0.02562 * 16 7 6 18 18 C 1.32153 * 122.07679 * 359.97438 * 17 16 7 19 19 F 1.35102 * 119.45561 * 179.97438 * 18 17 16 20 20 C 1.39399 * 119.87191 * 0.25004 * 4 3 2 21 21 C 1.37885 * 119.93218 * 359.51867 * 20 4 3 22 22 C 1.38816 * 119.96785 * 180.02562 * 2 1 3 23 23 O 1.35874 * 119.93235 * 359.97438 * 22 2 1 24 24 C 1.42904 * 117.00144 * 174.89527 * 23 22 2 25 25 C 1.53002 * 109.46751 * 83.52919 * 24 23 22 26 26 C 1.52999 * 109.47442 * 203.53233 * 24 23 22 27 27 H 1.09002 * 109.46979 * 90.00842 * 1 2 3 28 28 H 1.09002 * 109.47022 * 209.99770 * 1 2 3 29 29 H 1.08992 * 109.47070 * 329.99869 * 1 2 3 30 30 H 1.07995 * 120.03218 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.93835 * 0.04389 * 6 5 4 32 32 H 0.97004 * 119.99824 * 180.02562 * 11 10 8 33 33 H 1.08002 * 119.64567 * 179.72623 * 16 7 6 34 34 H 1.07999 * 120.03051 * 179.72065 * 20 4 3 35 35 H 1.08000 * 119.96873 * 180.20945 * 21 20 4 36 36 H 1.09001 * 109.46864 * 323.54107 * 24 23 22 37 37 H 1.09000 * 109.47251 * 300.00944 * 25 24 23 38 38 H 1.09007 * 109.46659 * 60.00572 * 25 24 23 39 39 H 1.09002 * 109.47001 * 180.02562 * 25 24 23 40 40 H 1.09000 * 109.46777 * 60.00039 * 26 24 23 41 41 H 1.09002 * 109.47073 * 180.02562 * 26 24 23 42 42 H 1.09000 * 109.47078 * 300.00136 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1949 0.0000 4 6 3.5896 1.1940 -0.0005 5 6 4.3335 2.4776 -0.0011 6 6 5.3536 2.7003 0.9168 7 6 6.0281 3.9373 0.8734 8 6 7.0732 4.2186 1.7830 9 1 7.8466 4.9234 1.5157 10 6 7.1057 3.5840 3.0292 11 7 6.0431 2.9639 3.4756 12 14 8.6655 3.6215 4.0562 13 1 9.7166 4.3807 3.3322 14 1 8.3859 4.2804 5.3573 15 1 9.1344 2.2329 4.2952 16 6 5.6431 4.8878 -0.0914 17 7 4.6709 4.6289 -0.9384 18 6 4.0171 3.4805 -0.9265 19 9 3.0265 3.2707 -1.8209 20 6 4.2832 -0.0152 -0.0064 21 6 3.5889 -1.2065 -0.0015 22 6 2.2004 -1.2026 -0.0005 23 8 1.5190 -2.3781 -0.0005 24 6 2.2908 -3.5754 -0.1144 25 6 2.8133 -3.9785 1.2660 26 6 1.4134 -4.6965 -0.6750 27 1 -0.3633 -0.0002 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6560 2.1302 0.0004 31 1 5.6218 1.9468 1.6424 32 1 6.0655 2.5242 4.3399 33 1 6.1483 5.8415 -0.1332 34 1 5.3631 -0.0188 -0.0113 35 1 4.1257 -2.1437 -0.0026 36 1 3.1325 -3.4027 -0.7851 37 1 3.4383 -3.1797 1.6654 38 1 1.9717 -4.1511 1.9368 39 1 3.4024 -4.8915 1.1791 40 1 1.0412 -4.4092 -1.6584 41 1 2.0020 -5.6098 -0.7614 42 1 0.5718 -4.8691 -0.0041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241222121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:33 Heat of formation + Delta-G solvation = -61.658535 kcal Electronic energy + Delta-G solvation = -25615.750094 eV Core-core repulsion = 21860.007833 eV Total energy + Delta-G solvation = -3755.742261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.42720 -41.41270 -40.21989 -38.66800 -35.99356 -34.84128 -33.41644 -33.04150 -32.16342 -29.73808 -28.18750 -27.63637 -27.33506 -24.73130 -24.20471 -23.27927 -21.73913 -21.55488 -19.26162 -19.08137 -18.50134 -17.80422 -17.09746 -16.95154 -16.56443 -16.37101 -16.28602 -15.62009 -15.16076 -15.06309 -14.67819 -14.32259 -14.14435 -14.10179 -13.97625 -13.81053 -13.67323 -13.45986 -13.38401 -13.15483 -13.06081 -12.98220 -12.90585 -12.70286 -12.63593 -12.23855 -12.08306 -11.78157 -11.71659 -11.49974 -11.25822 -10.39146 -10.29945 -9.80433 -9.61561 -8.80313 -8.73941 -6.51450 0.04422 0.34211 0.68429 0.90190 1.42003 1.48084 1.57943 2.17430 2.22984 2.54828 2.74984 3.25778 3.46455 3.75291 3.77616 3.84838 3.89799 4.02134 4.18077 4.21788 4.30208 4.33628 4.54390 4.63151 4.65891 4.71828 4.80963 4.81961 4.84451 4.87943 4.91270 4.97415 5.03617 5.13700 5.21104 5.25793 5.27937 5.34763 5.41749 5.54072 5.69387 5.72561 5.80533 5.92124 6.35951 6.48559 6.61338 6.65519 7.31297 8.17784 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013257 B = 0.003956 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.558176 B = 7076.635552 C = 8630.526806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.126 4.126 3 C -0.076 4.076 4 C -0.080 4.080 5 C -0.086 4.086 6 C -0.114 4.114 7 C 0.037 3.963 8 C -0.461 4.461 9 H 0.097 0.903 10 C 0.036 3.964 11 N -0.813 5.813 12 Si 0.990 3.010 13 H -0.252 1.252 14 H -0.267 1.267 15 H -0.264 1.264 16 C -0.004 4.004 17 N -0.503 5.503 18 C 0.137 3.863 19 F -0.144 7.144 20 C -0.079 4.079 21 C -0.199 4.199 22 C 0.126 3.874 23 O -0.314 6.314 24 C 0.064 3.936 25 C -0.179 4.179 26 C -0.142 4.142 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.295 0.705 33 H 0.157 0.843 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 -15.185 -0.782 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.094 4.094 4 C -0.081 4.081 5 C -0.090 4.090 6 C -0.139 4.139 7 C 0.032 3.968 8 C -0.489 4.489 9 H 0.115 0.885 10 C -0.182 4.182 11 N -0.437 5.437 12 Si 0.810 3.190 13 H -0.175 1.175 14 H -0.192 1.192 15 H -0.189 1.189 16 C -0.165 4.165 17 N -0.216 5.216 18 C -0.016 4.016 19 F -0.124 7.124 20 C -0.097 4.097 21 C -0.217 4.217 22 C 0.081 3.919 23 O -0.228 6.228 24 C 0.009 3.991 25 C -0.237 4.237 26 C -0.199 4.199 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.148 0.852 32 H 0.106 0.894 33 H 0.174 0.826 34 H 0.143 0.857 35 H 0.172 0.828 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.909 -14.769 -1.221 15.611 hybrid contribution 0.823 -0.095 0.862 1.196 sum -4.086 -14.863 -0.359 15.419 Atomic orbital electron populations 1.20587 0.88725 1.03106 1.02857 1.19377 0.97787 0.89685 1.05809 1.20920 0.92703 0.97469 0.98285 1.18673 0.93312 0.91956 1.04174 1.19317 0.98910 0.93811 0.96958 1.21683 0.96547 0.97608 0.98060 1.18833 0.93394 0.91328 0.93226 1.19923 1.07874 1.22384 0.98731 0.88452 1.26896 1.00434 0.91846 0.98988 1.69839 1.29761 1.24704 1.19443 0.85010 0.77035 0.79436 0.77484 1.17480 1.19154 1.18851 1.22612 0.97026 0.99913 0.96970 1.66250 1.08830 1.20390 1.26082 1.17771 0.94931 0.93733 0.95192 1.91382 1.59128 1.94685 1.67173 1.21055 0.99970 0.90951 0.97759 1.21323 0.93006 0.99095 1.08260 1.18805 0.90335 0.85941 0.96821 1.86077 1.36634 1.12320 1.87778 1.22757 0.95194 0.83091 0.98077 1.22400 1.02093 1.02808 0.96357 1.21852 1.00355 0.96358 1.01352 0.90609 0.90552 0.91282 0.86456 0.85157 0.89393 0.82614 0.85687 0.82768 0.90590 0.93140 0.91604 0.88759 0.91937 0.88285 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 9.79 71.24 0.70 -1.82 16 2 C -0.13 -4.15 5.89 -19.80 -0.12 -4.26 16 3 C -0.08 -2.93 8.51 22.47 0.19 -2.74 16 4 C -0.08 -3.40 5.33 -20.03 -0.11 -3.50 16 5 C -0.09 -4.21 5.48 -19.95 -0.11 -4.32 16 6 C -0.11 -5.77 8.26 23.12 0.19 -5.58 16 7 C 0.04 1.89 5.57 -21.21 -0.12 1.77 16 8 C -0.46 -22.32 9.08 23.44 0.21 -22.11 16 9 H 0.10 4.40 7.89 -2.91 -0.02 4.37 16 10 C 0.04 1.61 5.21 85.23 0.44 2.06 16 11 N -0.81 -39.00 10.94 21.82 0.24 -38.76 16 12 Si 0.99 34.08 29.58 68.60 2.03 36.11 16 13 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 14 H -0.27 -8.93 7.11 99.48 0.71 -8.23 16 15 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 16 C 0.00 -0.19 10.96 85.37 0.94 0.75 16 17 N -0.50 -26.15 10.33 -193.71 -2.00 -28.15 16 18 C 0.14 6.99 8.30 85.09 0.71 7.69 16 19 F -0.14 -7.01 15.90 44.97 0.72 -6.29 16 20 C -0.08 -2.91 9.53 22.47 0.21 -2.69 16 21 C -0.20 -6.03 8.17 22.33 0.18 -5.85 16 22 C 0.13 3.87 6.56 22.56 0.15 4.02 16 23 O -0.31 -8.06 8.84 -92.14 -0.81 -8.88 16 24 C 0.06 1.19 2.85 30.59 0.09 1.28 16 25 C -0.18 -2.99 9.14 71.98 0.66 -2.33 16 26 C -0.14 -1.88 9.56 71.98 0.69 -1.19 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 1.83 7.52 -2.39 -0.02 1.81 16 29 H 0.07 1.70 8.08 -2.39 -0.02 1.69 16 30 H 0.12 4.64 7.79 -2.91 -0.02 4.62 16 31 H 0.13 6.70 6.29 -2.91 -0.02 6.68 16 32 H 0.30 12.72 8.30 -92.71 -0.77 11.95 16 33 H 0.16 6.93 8.06 -2.91 -0.02 6.91 16 34 H 0.13 4.44 8.05 -2.91 -0.02 4.42 16 35 H 0.15 3.68 5.36 -2.91 -0.02 3.67 16 36 H 0.08 1.36 6.38 -2.39 -0.02 1.34 16 37 H 0.05 1.01 6.77 -2.39 -0.02 1.00 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -59.94 354.43 6.11 -53.83 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 1.04 Total: 30.97 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 4.91 Total: -38.82 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -1.76 Total: -66.91 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.81 Total: -8.88 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 0.72 Total: -6.29 kcal Atomic # 14 Polarization: 34.08 SS G_CDS: 2.03 Total: 36.11 kcal Total: -59.94 6.11 -53.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241222121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.828 kcal (2) G-P(sol) polarization free energy of solvation -59.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds