Wall clock time and date at job start Tue Mar 31 2020 11:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36229 * 119.94205 * 2 1 4 4 C 1.40937 * 119.88128 * 180.02562 * 3 2 1 5 5 C 1.40987 * 120.11180 * 179.97438 * 4 3 2 6 6 H 1.07990 * 119.99795 * 24.69655 * 5 4 3 7 7 C 1.40013 * 119.99822 * 204.69891 * 5 4 3 8 8 N 1.30794 * 120.00084 * 17.97663 * 7 5 4 9 9 Si 1.86797 * 119.99781 * 197.97817 * 7 5 4 10 10 H 1.48501 * 109.47041 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47220 * 119.99811 * 9 7 5 12 12 H 1.48504 * 109.47276 * 239.99767 * 9 7 5 13 13 C 1.40979 * 119.77799 * 0.02562 * 4 3 2 14 14 C 1.36187 * 119.87984 * 359.71179 * 13 4 3 15 15 C 1.39991 * 119.94036 * 179.97438 * 2 1 3 16 16 C 1.47848 * 119.88601 * 359.97152 * 15 2 1 17 17 C 1.40195 * 120.45797 * 130.00326 * 16 15 2 18 18 C 1.38004 * 118.39010 * 180.02562 * 17 16 15 19 19 C 1.39554 * 119.21941 * 359.97438 * 18 17 16 20 20 C 1.48200 * 119.56908 * 179.97438 * 19 18 17 21 21 C 1.39447 * 120.13413 * 180.02562 * 20 19 18 22 22 C 1.37986 * 119.86959 * 179.97438 * 21 20 19 23 23 C 1.38345 * 120.12935 * 359.97438 * 22 21 20 24 24 C 1.38344 * 120.26706 * 0.02562 * 23 22 21 25 25 C 1.37981 * 120.12977 * 359.97438 * 24 23 22 26 26 N 1.32778 * 120.86317 * 0.25413 * 19 18 17 27 27 C 1.31511 * 121.76255 * 359.47770 * 26 19 18 28 28 H 1.08994 * 109.46965 * 270.02163 * 1 2 3 29 29 H 1.09004 * 109.46625 * 30.01940 * 1 2 3 30 30 H 1.08994 * 109.47129 * 150.01845 * 1 2 3 31 31 H 1.07996 * 120.06357 * 359.97438 * 3 2 1 32 32 H 0.97005 * 119.99899 * 180.02562 * 8 7 5 33 33 H 1.08010 * 120.05831 * 180.02562 * 13 4 3 34 34 H 1.08004 * 119.94324 * 180.27578 * 14 13 4 35 35 H 1.08006 * 120.80679 * 0.02562 * 17 16 15 36 36 H 1.07995 * 120.38988 * 179.97438 * 18 17 16 37 37 H 1.08008 * 120.06801 * 359.97438 * 21 20 19 38 38 H 1.08008 * 119.93624 * 179.71947 * 22 21 20 39 39 H 1.08004 * 119.86463 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.93688 * 180.02562 * 24 23 22 41 41 H 1.08006 * 120.06461 * 180.02562 * 25 24 23 42 42 H 1.07995 * 119.65558 * 180.24267 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1805 0.0000 4 6 3.5963 1.1790 -0.0005 5 6 4.3049 2.3978 -0.0011 6 1 3.8419 3.2917 0.3896 7 6 5.6090 2.4492 -0.5083 8 7 6.0457 1.4939 -1.2876 9 14 6.7250 3.8822 -0.0719 10 1 5.9977 4.8229 0.8177 11 1 7.9331 3.3739 0.6261 12 1 7.1311 4.5892 -1.3131 13 6 4.2952 -0.0454 -0.0016 14 6 3.6060 -1.2200 0.0038 15 6 2.2057 -1.2131 0.0005 16 6 1.4626 -2.4912 0.0018 17 6 1.7766 -3.4967 -0.9234 18 6 1.0554 -4.6727 -0.8845 19 6 0.0456 -4.8214 0.0673 20 6 -0.7341 -6.0807 0.1156 21 6 -1.7460 -6.2417 1.0614 22 6 -2.4690 -7.4164 1.1012 23 6 -2.1918 -8.4330 0.2049 24 6 -1.1891 -8.2792 -0.7357 25 6 -0.4594 -7.1092 -0.7852 26 7 -0.2294 -3.8471 0.9265 27 6 0.4381 -2.7140 0.9251 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8899 -0.5142 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6471 2.1158 -0.0004 32 1 6.9493 1.5293 -1.6387 33 1 5.3753 -0.0518 -0.0016 34 1 4.1404 -2.1586 0.0075 35 1 2.5638 -3.3545 -1.6490 36 1 1.2699 -5.4685 -1.5823 37 1 -1.9636 -5.4485 1.7615 38 1 -3.2500 -7.5440 1.8363 39 1 -2.7606 -9.3505 0.2396 40 1 -0.9775 -9.0762 -1.4332 41 1 0.3229 -6.9900 -1.5203 42 1 0.1884 -1.9459 1.6420 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241794283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:30 Heat of formation + Delta-G solvation = 53.488146 kcal Electronic energy + Delta-G solvation = -23734.589240 eV Core-core repulsion = 20414.609338 eV Total energy + Delta-G solvation = -3319.979902 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.38251 -39.92295 -39.13978 -36.08805 -34.07338 -33.61516 -32.94957 -31.88274 -31.61158 -29.84150 -27.61623 -27.03986 -24.87984 -24.53328 -22.77765 -22.67450 -21.92108 -21.57672 -18.88974 -18.52653 -17.44562 -17.29686 -16.95461 -16.82095 -15.77550 -15.53705 -15.43130 -15.28998 -15.06472 -14.87633 -14.41020 -14.27672 -14.20882 -13.86710 -13.77650 -13.67191 -13.49933 -13.22757 -13.01843 -12.72663 -12.71957 -12.25896 -12.17865 -12.06726 -11.89827 -11.56491 -11.34720 -11.15488 -10.75162 -10.55074 -10.40810 -9.82150 -9.48398 -9.25130 -8.80148 -8.69641 -6.35832 -0.41578 0.35684 0.54026 0.66275 1.08425 1.15741 1.37450 1.50300 1.52912 2.17372 2.60433 2.77509 3.19168 3.22233 3.65158 3.71849 4.00977 4.04946 4.11593 4.17021 4.19969 4.30394 4.33496 4.38042 4.54865 4.63086 4.66883 4.74090 4.74519 4.87809 4.96450 5.04543 5.07836 5.10387 5.13295 5.24140 5.25165 5.40661 5.44880 5.54838 5.62917 5.68756 5.71247 5.77365 6.01850 6.08840 6.11209 6.18498 6.32342 6.63773 6.86705 6.97490 7.03643 8.24324 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.036162 B = 0.002414 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.109308 B =11595.638280 C =12109.358987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.039 4.039 3 C -0.243 4.243 4 C 0.089 3.911 5 C -0.487 4.487 6 H 0.079 0.921 7 C 0.035 3.965 8 N -0.814 5.814 9 Si 0.983 3.017 10 H -0.257 1.257 11 H -0.264 1.264 12 H -0.265 1.265 13 C -0.196 4.196 14 C -0.078 4.078 15 C -0.196 4.196 16 C -0.050 4.050 17 C -0.089 4.089 18 C -0.150 4.150 19 C 0.126 3.874 20 C -0.063 4.063 21 C -0.104 4.104 22 C -0.130 4.130 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.112 4.112 26 N -0.488 5.488 27 C 0.094 3.906 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.291 0.709 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.162 0.838 37 H 0.121 0.879 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.140 0.860 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.419 -15.520 0.342 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.039 4.039 3 C -0.263 4.263 4 C 0.087 3.913 5 C -0.516 4.516 6 H 0.097 0.903 7 C -0.182 4.182 8 N -0.439 5.439 9 Si 0.804 3.196 10 H -0.181 1.181 11 H -0.188 1.188 12 H -0.189 1.189 13 C -0.215 4.215 14 C -0.096 4.096 15 C -0.198 4.198 16 C -0.052 4.052 17 C -0.114 4.114 18 C -0.169 4.169 19 C -0.010 4.010 20 C -0.064 4.064 21 C -0.123 4.123 22 C -0.148 4.148 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.131 4.131 26 N -0.196 5.196 27 C -0.065 4.065 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.156 0.844 36 H 0.180 0.820 37 H 0.139 0.861 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.170 0.830 41 H 0.158 0.842 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.891 -15.698 0.798 19.123 hybrid contribution 1.627 1.243 -0.515 2.112 sum -9.263 -14.455 0.283 17.171 Atomic orbital electron populations 1.20798 0.90871 1.01867 1.02279 1.19478 0.95646 0.92001 0.96774 1.20705 0.93758 0.96558 1.15248 1.18043 0.92120 0.93738 0.87416 1.19899 0.99112 0.96202 1.36353 0.90296 1.26836 0.99370 1.00171 0.91787 1.69865 1.18646 1.33508 1.21876 0.85139 0.77625 0.77595 0.79286 1.18061 1.18815 1.18924 1.20914 0.99140 0.92264 1.09179 1.20614 0.93233 0.96826 0.98954 1.18019 0.92103 0.90736 1.18895 1.19888 0.95939 0.94032 0.95383 1.21855 0.99238 0.92785 0.97557 1.22186 0.96159 0.98591 0.99992 1.20083 0.94800 0.93170 0.92927 1.18699 0.97150 0.92080 0.98445 1.21413 0.94819 0.98337 0.97705 1.21417 1.00161 0.93100 1.00110 1.21647 0.97461 0.99534 0.94602 1.21421 0.95815 0.97472 0.99475 1.21498 1.00369 0.92997 0.98208 1.67502 1.27479 1.01087 1.23555 1.22956 0.92433 0.94052 0.97036 0.90385 0.91645 0.92455 0.88252 0.89824 0.88024 0.87941 0.84436 0.82035 0.86107 0.83920 0.83162 0.83009 0.84194 0.82443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.47 8.44 71.24 0.60 -2.87 16 2 C -0.04 -1.68 5.84 -19.91 -0.12 -1.79 16 3 C -0.24 -11.79 9.36 22.46 0.21 -11.58 16 4 C 0.09 4.78 5.57 -21.27 -0.12 4.66 16 5 C -0.49 -25.78 9.03 23.37 0.21 -25.57 16 6 H 0.08 4.03 7.91 -2.92 -0.02 4.00 16 7 C 0.03 1.71 5.13 85.28 0.44 2.15 16 8 N -0.81 -41.59 10.96 21.84 0.24 -41.35 16 9 Si 0.98 37.17 29.60 68.60 2.03 39.20 16 10 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 11 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 12 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 13 C -0.20 -10.21 8.63 22.46 0.19 -10.02 16 14 C -0.08 -3.61 9.46 22.23 0.21 -3.40 16 15 C -0.20 -8.40 5.52 -19.87 -0.11 -8.51 16 16 C -0.05 -1.85 4.72 -19.90 -0.09 -1.95 16 17 C -0.09 -2.88 9.66 22.69 0.22 -2.66 16 18 C -0.15 -4.17 9.44 22.53 0.21 -3.95 16 19 C 0.13 3.79 6.73 41.97 0.28 4.07 16 20 C -0.06 -1.61 5.88 -20.05 -0.12 -1.73 16 21 C -0.10 -2.50 9.57 22.50 0.22 -2.29 16 22 C -0.13 -2.34 10.03 22.24 0.22 -2.12 16 23 C -0.11 -1.69 10.04 22.32 0.22 -1.47 16 24 C -0.12 -1.91 10.03 22.23 0.22 -1.68 16 25 C -0.11 -2.21 9.42 22.50 0.21 -1.99 16 26 N -0.49 -16.28 9.40 -183.76 -1.73 -18.01 16 27 C 0.09 3.23 9.07 85.10 0.77 4.00 16 28 H 0.08 2.37 7.49 -2.39 -0.02 2.35 16 29 H 0.06 2.09 8.08 -2.38 -0.02 2.07 16 30 H 0.06 1.92 6.44 -2.39 -0.02 1.90 16 31 H 0.10 4.57 8.06 -2.91 -0.02 4.54 16 32 H 0.29 13.31 8.30 -92.70 -0.77 12.54 16 33 H 0.10 5.53 6.16 -2.91 -0.02 5.52 16 34 H 0.10 4.32 8.04 -2.91 -0.02 4.30 16 35 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.16 3.29 6.17 -2.91 -0.02 3.27 16 37 H 0.12 3.12 7.53 -2.91 -0.02 3.10 16 38 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 39 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 41 H 0.14 2.21 6.17 -2.91 -0.02 2.19 16 42 H 0.16 5.16 6.84 -2.91 -0.02 5.14 16 Total: -1.00 -61.24 352.25 5.47 -55.77 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 1.04 Total: 33.09 kcal Atomic # 6 Polarization: -72.60 SS G_CDS: 3.89 Total: -68.70 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -1.49 Total: -59.36 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -61.24 5.47 -55.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241794283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.257 kcal (2) G-P(sol) polarization free energy of solvation -61.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds