Wall clock time and date at job start Tue Mar 31 2020 10:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00087 * 2 1 4 4 H 1.48501 * 109.46916 * 269.99955 * 3 2 1 5 5 H 1.48497 * 109.46901 * 30.00257 * 3 2 1 6 6 H 1.48493 * 109.47051 * 150.00011 * 3 2 1 7 7 C 1.37875 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47285 * 180.02562 * 9 7 2 11 11 C 1.38333 * 119.87590 * 90.00338 * 10 9 7 12 12 C 1.37998 * 120.12444 * 179.97438 * 11 10 9 13 13 C 1.39377 * 119.87867 * 359.97438 * 12 11 10 14 14 C 1.48306 * 120.12809 * 179.97438 * 13 12 11 15 15 C 1.39457 * 120.00142 * 179.97438 * 14 13 12 16 16 C 1.37745 * 120.00255 * 180.02562 * 15 14 13 17 17 C 1.39453 * 119.99742 * 0.02562 * 16 15 14 18 18 C 1.48316 * 119.99893 * 179.97438 * 17 16 15 19 19 C 1.39809 * 120.54342 * 180.02562 * 18 17 16 20 20 C 1.38403 * 118.30904 * 179.97438 * 19 18 17 21 21 C 1.38319 * 119.28863 * 0.02562 * 20 19 18 22 22 N 1.31891 * 121.03661 * 0.02562 * 21 20 19 23 23 C 1.31740 * 121.85667 * 359.68288 * 22 21 20 24 24 C 1.39450 * 120.00131 * 0.25156 * 17 16 15 25 25 C 1.37753 * 119.99677 * 359.45068 * 24 17 16 26 26 C 1.39386 * 119.74757 * 0.25410 * 13 12 11 27 27 C 1.38009 * 119.87170 * 359.48926 * 26 13 12 28 28 H 0.96998 * 119.99791 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46863 * 59.99455 * 9 7 2 30 30 H 1.09004 * 109.47013 * 300.00196 * 9 7 2 31 31 H 1.07999 * 119.93074 * 359.94708 * 11 10 9 32 32 H 1.08006 * 120.06428 * 179.97438 * 12 11 10 33 33 H 1.07997 * 119.99577 * 0.04158 * 15 14 13 34 34 H 1.07999 * 120.00059 * 180.02562 * 16 15 14 35 35 H 1.08003 * 120.84160 * 359.95314 * 19 18 17 36 36 H 1.08003 * 120.35237 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.47833 * 179.97438 * 21 20 19 38 38 H 1.08006 * 119.70358 * 180.29236 * 23 22 21 39 39 H 1.07996 * 119.99285 * 179.72942 * 24 17 16 40 40 H 1.08000 * 119.99771 * 180.24896 * 25 24 17 41 41 H 1.08003 * 120.06443 * 179.72904 * 26 13 12 42 42 H 1.07996 * 119.93715 * 180.23052 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6781 -4.1683 1.1990 12 6 3.5745 -5.2176 1.2049 13 6 4.0283 -5.7499 -0.0005 14 6 4.9921 -6.8772 -0.0006 15 6 5.4440 -7.4082 -1.2083 16 6 6.3387 -8.4555 -1.2083 17 6 6.7922 -8.9851 -0.0006 18 6 7.7551 -10.1132 -0.0006 19 6 8.2168 -10.6533 1.2034 20 6 9.1143 -11.7055 1.1495 21 6 9.5224 -12.1843 -0.0824 22 7 9.0702 -11.6536 -1.2020 23 6 8.2110 -10.6550 -1.2008 24 6 6.3358 -8.4580 1.2071 25 6 5.4458 -7.4066 1.2070 26 6 3.5774 -5.2150 -1.2061 27 6 2.6769 -4.1692 -1.2001 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 2.3257 -3.7550 2.1324 32 1 3.9237 -5.6255 2.1420 33 1 5.0927 -6.9980 -2.1435 34 1 6.6890 -8.8664 -2.1437 35 1 7.8818 -10.2591 2.1516 36 1 9.4919 -12.1479 2.0595 37 1 10.2229 -13.0050 -0.1281 38 1 7.8598 -10.2500 -2.1384 39 1 6.6837 -8.8711 2.1422 40 1 5.0955 -6.9957 2.1424 41 1 3.9291 -5.6208 -2.1432 42 1 2.3240 -3.7565 -2.1336 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241845354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:43 Heat of formation + Delta-G solvation = 70.957487 kcal Electronic energy + Delta-G solvation = -22996.957042 eV Core-core repulsion = 19677.734668 eV Total energy + Delta-G solvation = -3319.222374 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.66460 -39.51788 -38.11606 -34.34107 -33.19068 -32.51771 -31.46880 -31.27286 -30.21128 -29.12989 -26.69281 -24.50950 -24.39063 -22.98227 -22.78846 -21.49087 -21.01751 -20.01384 -18.08625 -16.92308 -16.53131 -16.39095 -16.29762 -15.20628 -14.99589 -14.62473 -14.36846 -14.35894 -14.14006 -13.97207 -13.70104 -13.33992 -13.24784 -13.11709 -12.71175 -12.56965 -12.24130 -11.93262 -11.56712 -11.40781 -11.20148 -11.11842 -10.71590 -10.57093 -10.47936 -10.21148 -9.93279 -9.78571 -9.60777 -9.49471 -9.11229 -8.65167 -8.48026 -8.41162 -7.40649 -6.09385 -4.13919 0.19154 0.88815 1.28569 1.29801 1.96529 2.29191 3.27116 3.33531 3.37420 3.43498 3.84631 4.02685 4.33760 4.35557 4.38216 4.53128 4.53420 4.63628 4.77382 4.78766 4.82207 5.09140 5.18855 5.24796 5.34047 5.35566 5.40042 5.44448 5.69873 5.72105 5.80728 5.88639 5.89913 6.04083 6.10672 6.16660 6.34524 6.38777 6.44904 6.52946 6.60308 6.82809 7.02594 7.08062 7.09028 7.42930 7.60921 7.61778 7.76014 7.85936 8.24827 8.91258 9.50284 11.00182 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.034917 B = 0.001994 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.714664 B =14038.429587 C =14117.809893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.044 3.956 10 C -0.020 4.020 11 C -0.126 4.126 12 C -0.104 4.104 13 C -0.096 4.096 14 C -0.007 4.007 15 C -0.118 4.118 16 C -0.100 4.100 17 C -0.067 4.067 18 C -0.082 4.082 19 C -0.074 4.074 20 C -0.168 4.168 21 C 0.088 3.912 22 N -0.482 5.482 23 C 0.103 3.897 24 C -0.101 4.101 25 C -0.119 4.119 26 C -0.103 4.103 27 C -0.126 4.126 28 H 0.263 0.737 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.110 -22.145 1.764 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.008 3.992 10 C -0.020 4.020 11 C -0.144 4.144 12 C -0.121 4.121 13 C -0.096 4.096 14 C -0.007 4.007 15 C -0.136 4.136 16 C -0.118 4.118 17 C -0.068 4.068 18 C -0.084 4.084 19 C -0.100 4.100 20 C -0.187 4.187 21 C -0.068 4.068 22 N -0.190 5.190 23 C -0.055 4.055 24 C -0.118 4.118 25 C -0.137 4.137 26 C -0.121 4.121 27 C -0.144 4.144 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.134 0.866 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.255 -22.372 0.970 27.095 hybrid contribution 0.162 1.353 0.885 1.625 sum 15.416 -21.018 1.854 26.132 Atomic orbital electron populations 1.69953 1.06035 1.26906 1.50291 1.25014 0.94901 0.99297 0.95096 0.86523 0.79830 0.83066 0.78232 1.20539 1.21116 1.19788 1.21031 0.93048 0.89746 1.51291 0.92432 1.18417 0.92619 0.89641 0.98569 1.20852 0.95045 0.94201 0.91929 1.21052 0.98308 0.96472 0.98564 1.21111 0.97647 0.96838 0.96551 1.18522 0.99796 0.97342 0.93932 1.19008 0.94665 0.94060 0.93005 1.21193 0.97770 0.96609 0.98002 1.21080 0.97244 0.96421 0.97046 1.18548 0.98197 0.96168 0.93869 1.19845 0.97664 0.96439 0.94455 1.21710 0.95180 0.94880 0.98214 1.22102 0.98978 0.97920 0.99730 1.22806 0.97772 0.98448 0.87789 1.67651 1.10166 1.09788 1.31355 1.22944 0.92918 0.92096 0.97530 1.21061 0.97348 0.96422 0.97016 1.21182 0.97880 0.96613 0.97989 1.21123 0.97586 0.96839 0.96568 1.21059 0.98257 0.96514 0.98565 0.92776 0.95146 0.95162 0.86080 0.86685 0.85256 0.85700 0.84532 0.84610 0.82778 0.82492 0.85915 0.85339 0.86634 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -14.11 9.09 -34.44 -0.31 -14.42 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.04 1.11 5.10 -29.04 -0.15 0.96 16 10 C -0.02 -0.43 5.07 -104.55 -0.53 -0.96 16 11 C -0.13 -2.36 9.68 -39.63 -0.38 -2.75 16 12 C -0.10 -1.66 9.43 -39.25 -0.37 -2.03 16 13 C -0.10 -1.49 5.88 -104.90 -0.62 -2.11 16 14 C -0.01 -0.10 5.88 -104.85 -0.62 -0.71 16 15 C -0.12 -1.38 9.41 -39.31 -0.37 -1.75 16 16 C -0.10 -1.03 9.42 -39.31 -0.37 -1.40 16 17 C -0.07 -0.69 5.88 -104.85 -0.62 -1.31 16 18 C -0.08 -0.78 5.89 -104.75 -0.62 -1.40 16 19 C -0.07 -0.59 9.53 -38.93 -0.37 -0.96 16 20 C -0.17 -1.16 10.10 -39.49 -0.40 -1.56 16 21 C 0.09 0.70 11.17 -17.50 -0.20 0.51 16 22 N -0.48 -4.93 10.35 -12.96 -0.13 -5.07 16 23 C 0.10 0.99 10.60 -17.18 -0.18 0.81 16 24 C -0.10 -1.02 9.43 -39.31 -0.37 -1.39 16 25 C -0.12 -1.38 9.41 -39.31 -0.37 -1.75 16 26 C -0.10 -1.66 9.43 -39.24 -0.37 -2.03 16 27 C -0.13 -2.36 9.68 -39.63 -0.38 -2.75 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 32 H 0.12 1.51 6.20 -52.48 -0.33 1.18 16 33 H 0.13 1.34 6.19 -52.49 -0.32 1.02 16 34 H 0.13 0.98 6.22 -52.49 -0.33 0.65 16 35 H 0.14 0.83 6.31 -52.48 -0.33 0.49 16 36 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 37 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.16 1.23 6.22 -52.48 -0.33 0.91 16 39 H 0.12 0.94 6.26 -52.49 -0.33 0.61 16 40 H 0.13 1.33 6.19 -52.49 -0.32 1.00 16 41 H 0.12 1.52 6.20 -52.48 -0.33 1.19 16 42 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -31.23 354.26 -11.46 -42.69 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.68 Total: 1.48 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: -7.69 Total: -35.45 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.60 Total: -30.31 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.23 -11.46 -42.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241845354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.647 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds