Wall clock time and date at job start Tue Mar 31 2020 10:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00087 * 2 1 4 4 H 1.48501 * 109.46916 * 269.99955 * 3 2 1 5 5 H 1.48497 * 109.46901 * 30.00257 * 3 2 1 6 6 H 1.48493 * 109.47051 * 150.00011 * 3 2 1 7 7 C 1.37875 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47285 * 180.02562 * 9 7 2 11 11 C 1.38333 * 119.87590 * 90.00338 * 10 9 7 12 12 C 1.37998 * 120.12444 * 179.97438 * 11 10 9 13 13 C 1.39377 * 119.87867 * 359.97438 * 12 11 10 14 14 C 1.48306 * 120.12809 * 179.97438 * 13 12 11 15 15 C 1.39457 * 120.00142 * 179.97438 * 14 13 12 16 16 C 1.37745 * 120.00255 * 180.02562 * 15 14 13 17 17 C 1.39453 * 119.99742 * 0.02562 * 16 15 14 18 18 C 1.48316 * 119.99893 * 179.97438 * 17 16 15 19 19 C 1.39809 * 120.54342 * 180.02562 * 18 17 16 20 20 C 1.38403 * 118.30904 * 179.97438 * 19 18 17 21 21 C 1.38319 * 119.28863 * 0.02562 * 20 19 18 22 22 N 1.31891 * 121.03661 * 0.02562 * 21 20 19 23 23 C 1.31740 * 121.85667 * 359.68288 * 22 21 20 24 24 C 1.39450 * 120.00131 * 0.25156 * 17 16 15 25 25 C 1.37753 * 119.99677 * 359.45068 * 24 17 16 26 26 C 1.39386 * 119.74757 * 0.25410 * 13 12 11 27 27 C 1.38009 * 119.87170 * 359.48926 * 26 13 12 28 28 H 0.96998 * 119.99791 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46863 * 59.99455 * 9 7 2 30 30 H 1.09004 * 109.47013 * 300.00196 * 9 7 2 31 31 H 1.07999 * 119.93074 * 359.94708 * 11 10 9 32 32 H 1.08006 * 120.06428 * 179.97438 * 12 11 10 33 33 H 1.07997 * 119.99577 * 0.04158 * 15 14 13 34 34 H 1.07999 * 120.00059 * 180.02562 * 16 15 14 35 35 H 1.08003 * 120.84160 * 359.95314 * 19 18 17 36 36 H 1.08003 * 120.35237 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.47833 * 179.97438 * 21 20 19 38 38 H 1.08006 * 119.70358 * 180.29236 * 23 22 21 39 39 H 1.07996 * 119.99285 * 179.72942 * 24 17 16 40 40 H 1.08000 * 119.99771 * 180.24896 * 25 24 17 41 41 H 1.08003 * 120.06443 * 179.72904 * 26 13 12 42 42 H 1.07996 * 119.93715 * 180.23052 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6781 -4.1683 1.1990 12 6 3.5745 -5.2176 1.2049 13 6 4.0283 -5.7499 -0.0005 14 6 4.9921 -6.8772 -0.0006 15 6 5.4440 -7.4082 -1.2083 16 6 6.3387 -8.4555 -1.2083 17 6 6.7922 -8.9851 -0.0006 18 6 7.7551 -10.1132 -0.0006 19 6 8.2168 -10.6533 1.2034 20 6 9.1143 -11.7055 1.1495 21 6 9.5224 -12.1843 -0.0824 22 7 9.0702 -11.6536 -1.2020 23 6 8.2110 -10.6550 -1.2008 24 6 6.3358 -8.4580 1.2071 25 6 5.4458 -7.4066 1.2070 26 6 3.5774 -5.2150 -1.2061 27 6 2.6769 -4.1692 -1.2001 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 2.3257 -3.7550 2.1324 32 1 3.9237 -5.6255 2.1420 33 1 5.0927 -6.9980 -2.1435 34 1 6.6890 -8.8664 -2.1437 35 1 7.8818 -10.2591 2.1516 36 1 9.4919 -12.1479 2.0595 37 1 10.2229 -13.0050 -0.1281 38 1 7.8598 -10.2500 -2.1384 39 1 6.6837 -8.8711 2.1422 40 1 5.0955 -6.9957 2.1424 41 1 3.9291 -5.6208 -2.1432 42 1 2.3240 -3.7565 -2.1336 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241845354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:42 Heat of formation + Delta-G solvation = 57.129621 kcal Electronic energy + Delta-G solvation = -22997.556663 eV Core-core repulsion = 19677.734668 eV Total energy + Delta-G solvation = -3319.821996 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35388 -40.55408 -39.21775 -35.75304 -34.61749 -33.32996 -32.65833 -32.29726 -31.38223 -30.35253 -28.16253 -25.68996 -25.24030 -24.29708 -23.79909 -22.57769 -22.04342 -21.26249 -18.82703 -18.52440 -17.72848 -17.28495 -17.15063 -16.74736 -16.12728 -15.97800 -15.29876 -15.09682 -15.02270 -15.00294 -14.66402 -14.59099 -14.33616 -14.18400 -14.06423 -13.68830 -13.45952 -13.27261 -13.06988 -12.78885 -12.62988 -12.44837 -12.23694 -12.09429 -11.66606 -11.47828 -11.40677 -11.18412 -10.62288 -10.53480 -10.41150 -9.91679 -9.77544 -9.70857 -8.59384 -8.19682 -6.35474 -0.60550 0.27553 0.36470 0.48934 0.59103 1.19533 1.39054 1.39547 1.51240 2.37992 2.65129 3.00480 3.08695 3.24859 3.41418 3.61484 3.71012 3.81455 3.94953 3.99294 4.02662 4.10007 4.17048 4.27305 4.33445 4.46728 4.48387 4.59951 4.65180 4.78146 4.79687 4.92163 5.03685 5.10554 5.11364 5.17775 5.21966 5.32361 5.36033 5.41862 5.42671 5.60875 5.62164 5.73503 5.76621 5.84150 5.99591 6.06022 6.09658 6.23567 6.77067 7.00922 7.33142 8.87207 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.034917 B = 0.001994 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.714664 B =14038.429587 C =14117.809893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.054 3.946 10 C -0.060 4.060 11 C -0.136 4.136 12 C -0.103 4.103 13 C -0.080 4.080 14 C -0.040 4.040 15 C -0.120 4.120 16 C -0.108 4.108 17 C -0.059 4.059 18 C -0.100 4.100 19 C -0.077 4.077 20 C -0.163 4.163 21 C 0.081 3.919 22 N -0.511 5.511 23 C 0.090 3.910 24 C -0.104 4.104 25 C -0.119 4.119 26 C -0.103 4.103 27 C -0.136 4.136 28 H 0.266 0.734 29 H 0.004 0.996 30 H 0.004 0.996 31 H 0.117 0.883 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.179 0.821 38 H 0.166 0.834 39 H 0.150 0.850 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.227 -24.266 2.592 30.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.017 3.983 10 C -0.060 4.060 11 C -0.154 4.154 12 C -0.120 4.120 13 C -0.080 4.080 14 C -0.040 4.040 15 C -0.137 4.137 16 C -0.125 4.125 17 C -0.060 4.060 18 C -0.102 4.102 19 C -0.102 4.102 20 C -0.183 4.183 21 C -0.075 4.075 22 N -0.220 5.220 23 C -0.066 4.066 24 C -0.122 4.122 25 C -0.137 4.137 26 C -0.121 4.121 27 C -0.154 4.154 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.135 0.865 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.175 0.825 36 H 0.185 0.815 37 H 0.196 0.804 38 H 0.183 0.817 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.164 0.836 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 18.375 -24.503 1.794 30.680 hybrid contribution -0.628 1.714 0.643 1.935 sum 17.747 -22.789 2.437 28.987 Atomic orbital electron populations 1.70077 1.07633 1.27972 1.51207 1.25931 0.95791 1.03109 0.94573 0.85438 0.78585 0.78413 0.78590 1.19675 1.20396 1.19068 1.21356 0.93036 0.91195 1.51055 0.92814 1.18138 0.92965 0.91237 0.95945 1.20529 0.96631 0.94796 0.94023 1.21070 0.99231 0.97551 0.97513 1.21373 0.96567 0.95707 0.98363 1.18855 0.98736 0.97028 0.93373 1.18964 0.95934 0.94578 0.94482 1.21357 0.97712 0.96759 0.97895 1.21337 0.96895 0.96059 0.98224 1.18796 0.97416 0.95774 0.94022 1.19878 0.98354 0.96812 0.95195 1.22060 0.94862 0.94835 0.98493 1.22452 0.98055 0.97212 1.00558 1.23338 0.97669 0.98712 0.87782 1.67671 1.11035 1.10532 1.32753 1.23137 0.93076 0.92257 0.98172 1.21340 0.96802 0.95899 0.98161 1.21372 0.97761 0.96749 0.97830 1.21379 0.96568 0.95763 0.98386 1.21069 0.99202 0.97596 0.97525 0.92537 0.97769 0.97731 0.86484 0.83512 0.84399 0.83669 0.82512 0.81476 0.80443 0.81729 0.83259 0.84243 0.83645 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.53 -30.36 9.09 25.60 0.23 -30.12 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.05 2.91 5.10 29.10 0.15 3.06 16 10 C -0.06 -2.65 5.07 -19.82 -0.10 -2.75 16 11 C -0.14 -5.24 9.68 22.24 0.22 -5.03 16 12 C -0.10 -3.19 9.43 22.49 0.21 -2.98 16 13 C -0.08 -2.38 5.88 -20.05 -0.12 -2.50 16 14 C -0.04 -0.96 5.88 -20.01 -0.12 -1.08 16 15 C -0.12 -2.52 9.41 22.45 0.21 -2.31 16 16 C -0.11 -1.94 9.42 22.45 0.21 -1.73 16 17 C -0.06 -1.06 5.88 -20.01 -0.12 -1.18 16 18 C -0.10 -1.64 5.89 -19.95 -0.12 -1.76 16 19 C -0.08 -0.96 9.53 22.69 0.22 -0.74 16 20 C -0.16 -1.65 10.10 22.33 0.23 -1.43 16 21 C 0.08 1.06 11.17 84.70 0.95 2.01 16 22 N -0.51 -9.49 10.35 -194.91 -2.02 -11.51 16 23 C 0.09 1.57 10.60 84.97 0.90 2.47 16 24 C -0.10 -1.77 9.43 22.45 0.21 -1.56 16 25 C -0.12 -2.44 9.41 22.45 0.21 -2.23 16 26 C -0.10 -3.25 9.43 22.49 0.21 -3.04 16 27 C -0.14 -5.28 9.68 22.24 0.22 -5.07 16 28 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.00 0.23 8.08 -2.39 -0.02 0.21 16 30 H 0.00 0.25 8.08 -2.38 -0.02 0.23 16 31 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.15 3.53 6.20 -2.91 -0.02 3.51 16 33 H 0.14 2.55 6.19 -2.91 -0.02 2.53 16 34 H 0.15 1.93 6.22 -2.91 -0.02 1.91 16 35 H 0.16 1.21 6.31 -2.91 -0.02 1.19 16 36 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 37 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.17 2.32 6.22 -2.91 -0.02 2.30 16 39 H 0.15 1.66 6.26 -2.91 -0.02 1.64 16 40 H 0.14 2.44 6.19 -2.91 -0.02 2.42 16 41 H 0.15 3.59 6.20 -2.91 -0.02 3.57 16 42 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -70.43 354.26 5.61 -64.83 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 1.05 Total: 13.31 kcal Atomic # 6 Polarization: -61.52 SS G_CDS: 4.26 Total: -57.26 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -1.73 Total: -67.28 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -70.43 5.61 -64.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241845354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.955 kcal (2) G-P(sol) polarization free energy of solvation -70.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds