Wall clock time and date at job start Tue Mar 31 2020 10:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00506 * 2 1 4 4 H 1.48500 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47198 * 299.99985 * 3 2 1 6 6 H 1.48500 * 109.47044 * 59.99785 * 3 2 1 7 7 C 1.37880 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47437 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.93791 * 89.99659 * 10 9 7 12 12 C 1.38307 * 120.25619 * 180.02562 * 11 10 9 13 13 C 1.38029 * 120.12289 * 0.02641 * 12 11 10 14 14 C 1.39366 * 119.87234 * 359.97438 * 13 12 11 15 15 C 1.48309 * 120.12533 * 180.02562 * 14 13 12 16 16 C 1.39464 * 119.99661 * 0.02562 * 15 14 13 17 17 C 1.37742 * 120.00134 * 179.97438 * 16 15 14 18 18 C 1.39472 * 119.99726 * 0.02562 * 17 16 15 19 19 C 1.48260 * 120.00344 * 180.02562 * 18 17 16 20 20 C 1.39382 * 119.73701 * 179.97438 * 19 18 17 21 21 C 1.38382 * 119.06926 * 180.02562 * 20 19 18 22 22 C 1.38803 * 118.51354 * 0.02562 * 21 20 19 23 23 C 1.38248 * 119.37293 * 0.25356 * 22 21 20 24 24 N 1.31763 * 120.89881 * 359.47408 * 23 22 21 25 25 C 1.39475 * 119.99761 * 0.27560 * 18 17 16 26 26 C 1.37742 * 119.99292 * 359.42655 * 25 18 17 27 27 C 1.37986 * 119.93908 * 270.32728 * 10 9 7 28 28 H 0.97005 * 119.99403 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47453 * 59.99734 * 9 7 2 30 30 H 1.09004 * 109.47256 * 299.99977 * 9 7 2 31 31 H 1.08004 * 119.87391 * 0.02930 * 11 10 9 32 32 H 1.07997 * 119.94376 * 179.97438 * 12 11 10 33 33 H 1.07995 * 120.06596 * 179.97438 * 13 12 11 34 34 H 1.07995 * 119.99500 * 359.97384 * 16 15 14 35 35 H 1.07994 * 120.00215 * 180.02562 * 17 16 15 36 36 H 1.08000 * 120.46583 * 359.97438 * 20 19 18 37 37 H 1.07996 * 120.74689 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.30972 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.55317 * 179.72852 * 23 22 21 40 40 H 1.07996 * 119.99921 * 179.69615 * 25 18 17 41 41 H 1.08005 * 120.00028 * 180.31892 * 26 25 18 42 42 H 1.07995 * 120.06100 * 359.96795 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.6788 -4.1695 1.1995 12 6 3.5778 -5.2205 1.2071 13 6 4.0330 -5.7514 0.0171 14 6 3.5845 -5.2268 -1.1936 15 6 4.0694 -5.7933 -2.4756 16 6 4.9756 -6.8534 -2.4709 17 6 5.4256 -7.3800 -3.6615 18 6 4.9755 -6.8527 -4.8716 19 6 5.4594 -7.4198 -6.1532 20 6 5.0055 -6.8888 -7.3593 21 6 5.4657 -7.4290 -8.5473 22 6 6.3656 -8.4843 -8.4906 23 6 6.7695 -8.9657 -7.2592 24 7 6.3199 -8.4297 -6.1426 25 6 4.0741 -5.7884 -4.8762 26 6 3.6195 -5.2659 -3.6855 27 6 2.6827 -4.1637 -1.1952 28 1 -0.4849 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 2.3256 -3.7569 2.1330 32 1 3.9250 -5.6260 2.1459 33 1 4.7353 -6.5718 0.0242 34 1 5.3244 -7.2614 -1.5338 35 1 6.1270 -8.2012 -3.6579 36 1 4.3038 -6.0679 -7.3667 37 1 5.1323 -7.0384 -9.4973 38 1 6.7432 -8.9281 -9.3999 39 1 7.4662 -9.7895 -7.2117 40 1 3.7293 -5.3768 -5.8132 41 1 2.9175 -4.4451 -3.6890 42 1 2.3355 -3.7501 -2.1304 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241972908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:46 Heat of formation + Delta-G solvation = 72.486322 kcal Electronic energy + Delta-G solvation = -23275.981892 eV Core-core repulsion = 19956.825813 eV Total energy + Delta-G solvation = -3319.156079 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55591 -39.41278 -37.96994 -33.91770 -33.11903 -32.75990 -31.42386 -31.15884 -30.53350 -28.25953 -27.03204 -24.36088 -24.23078 -23.38179 -22.33805 -21.88705 -20.69207 -19.73018 -17.87484 -16.63479 -16.41077 -16.29316 -16.10064 -15.47164 -14.91720 -14.71188 -14.45072 -14.36619 -13.87882 -13.84224 -13.52821 -13.39014 -13.07827 -13.04791 -12.51869 -12.37163 -12.09471 -11.78580 -11.46720 -11.39216 -11.23102 -10.91405 -10.73006 -10.46313 -10.29867 -10.27052 -9.96890 -9.70597 -9.55827 -9.45539 -8.93348 -8.81441 -8.45754 -7.98162 -7.51352 -6.07498 -4.11302 0.28745 0.98109 1.32313 1.47734 2.06140 2.32303 3.27441 3.35330 3.40549 3.50834 3.92236 3.99701 4.38527 4.38986 4.54920 4.58805 4.74595 4.81115 4.87750 4.88939 5.03693 5.21112 5.27356 5.32747 5.43113 5.47408 5.52574 5.54803 5.75139 5.85215 5.85931 5.92389 6.05503 6.12378 6.18692 6.24826 6.45257 6.52178 6.54663 6.62553 6.70629 6.94175 7.05651 7.12348 7.17413 7.46356 7.65390 7.71631 7.79390 7.88651 8.28208 8.94317 9.52879 11.02412 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.002549 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.340583 B =10983.280167 C =12177.776689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.035 4.035 11 C -0.115 4.115 12 C -0.124 4.124 13 C -0.133 4.133 14 C -0.066 4.066 15 C -0.009 4.009 16 C -0.125 4.125 17 C -0.075 4.075 18 C -0.071 4.071 19 C 0.179 3.821 20 C -0.167 4.167 21 C -0.072 4.072 22 C -0.184 4.184 23 C 0.104 3.896 24 N -0.482 5.482 25 C -0.093 4.093 26 C -0.118 4.118 27 C -0.105 4.105 28 H 0.262 0.738 29 H 0.029 0.971 30 H 0.030 0.970 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.831 -17.141 -13.404 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.035 4.035 11 C -0.133 4.133 12 C -0.142 4.142 13 C -0.151 4.151 14 C -0.066 4.066 15 C -0.009 4.009 16 C -0.143 4.143 17 C -0.093 4.093 18 C -0.072 4.072 19 C 0.044 3.956 20 C -0.187 4.187 21 C -0.097 4.097 22 C -0.204 4.204 23 C -0.054 4.054 24 N -0.191 5.191 25 C -0.112 4.112 26 C -0.136 4.136 27 C -0.123 4.123 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.173 0.827 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.976 -17.364 -12.621 24.110 hybrid contribution 0.193 1.322 -0.893 1.607 sum 11.169 -16.042 -13.515 23.764 Atomic orbital electron populations 1.69967 1.06028 1.26740 1.50518 1.25012 0.94883 0.99278 0.95162 0.86491 0.80185 0.83476 0.77656 1.19638 1.20914 1.20919 1.21091 0.93087 0.89809 1.50955 0.92400 1.18375 0.92547 0.89581 0.98479 1.20653 0.96090 0.95043 0.91732 1.21216 0.97573 0.96039 0.98446 1.20979 0.98473 0.97489 0.97281 1.20954 1.01343 1.00863 0.91891 1.18709 0.99007 0.97430 0.91453 1.19062 0.94863 0.94296 0.92669 1.21218 0.98056 0.96799 0.98195 1.21152 0.98315 0.98944 0.90907 1.18452 0.99905 0.97810 0.91007 1.19854 0.91992 0.91284 0.92472 1.22158 1.02032 1.01904 0.92601 1.21547 0.94899 0.94752 0.98547 1.22165 0.99940 0.98714 0.99601 1.22727 0.97116 0.97956 0.87566 1.67653 1.10370 1.09543 1.31511 1.21098 0.96420 0.95322 0.98355 1.21256 1.00575 1.00523 0.91207 1.21171 0.97167 0.95345 0.98632 0.92870 0.95279 0.95199 0.86275 0.86754 0.86747 0.85425 0.84928 0.84364 0.84705 0.84860 0.82667 0.85616 0.84790 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.14 9.09 -34.44 -0.31 -14.45 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.05 1.19 5.10 -29.04 -0.15 1.04 16 10 C -0.04 -0.75 5.06 -104.67 -0.53 -1.28 16 11 C -0.11 -2.19 9.69 -39.51 -0.38 -2.58 16 12 C -0.12 -2.02 10.03 -39.63 -0.40 -2.42 16 13 C -0.13 -2.09 9.43 -39.24 -0.37 -2.46 16 14 C -0.07 -1.12 5.88 -104.90 -0.62 -1.74 16 15 C -0.01 -0.13 5.88 -104.85 -0.62 -0.74 16 16 C -0.12 -1.66 9.41 -39.31 -0.37 -2.03 16 17 C -0.07 -0.96 9.56 -39.30 -0.38 -1.33 16 18 C -0.07 -0.91 5.88 -104.86 -0.62 -1.52 16 19 C 0.18 2.13 6.73 -82.95 -0.56 1.57 16 20 C -0.17 -1.60 9.46 -39.10 -0.37 -1.97 16 21 C -0.07 -0.55 10.17 -39.32 -0.40 -0.95 16 22 C -0.18 -1.35 10.11 -39.37 -0.40 -1.75 16 23 C 0.10 0.92 11.17 -17.58 -0.20 0.72 16 24 N -0.48 -5.66 9.42 -9.79 -0.09 -5.75 16 25 C -0.09 -1.14 9.40 -39.30 -0.37 -1.51 16 26 C -0.12 -1.65 9.41 -39.31 -0.37 -2.02 16 27 C -0.11 -2.04 9.08 -39.24 -0.36 -2.39 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 32 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.11 1.47 6.19 -52.49 -0.33 1.15 16 34 H 0.13 1.47 6.19 -52.49 -0.32 1.14 16 35 H 0.13 1.58 7.52 -52.49 -0.39 1.18 16 36 H 0.14 1.08 6.18 -52.49 -0.32 0.76 16 37 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 39 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.13 1.21 6.17 -52.49 -0.32 0.89 16 41 H 0.13 1.83 6.19 -52.48 -0.32 1.50 16 42 H 0.12 2.26 6.20 -52.49 -0.33 1.94 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -31.45 356.71 -11.69 -43.14 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -4.84 Total: 2.52 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: -7.85 Total: -36.29 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.64 Total: -31.12 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.45 -11.69 -43.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241972908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.629 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds