Wall clock time and date at job start Tue Mar 31 2020 10:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00506 * 2 1 4 4 H 1.48500 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47198 * 299.99985 * 3 2 1 6 6 H 1.48500 * 109.47044 * 59.99785 * 3 2 1 7 7 C 1.37880 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47437 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.93791 * 89.99659 * 10 9 7 12 12 C 1.38307 * 120.25619 * 180.02562 * 11 10 9 13 13 C 1.38029 * 120.12289 * 0.02641 * 12 11 10 14 14 C 1.39366 * 119.87234 * 359.97438 * 13 12 11 15 15 C 1.48309 * 120.12533 * 180.02562 * 14 13 12 16 16 C 1.39464 * 119.99661 * 0.02562 * 15 14 13 17 17 C 1.37742 * 120.00134 * 179.97438 * 16 15 14 18 18 C 1.39472 * 119.99726 * 0.02562 * 17 16 15 19 19 C 1.48260 * 120.00344 * 180.02562 * 18 17 16 20 20 C 1.39382 * 119.73701 * 179.97438 * 19 18 17 21 21 C 1.38382 * 119.06926 * 180.02562 * 20 19 18 22 22 C 1.38803 * 118.51354 * 0.02562 * 21 20 19 23 23 C 1.38248 * 119.37293 * 0.25356 * 22 21 20 24 24 N 1.31763 * 120.89881 * 359.47408 * 23 22 21 25 25 C 1.39475 * 119.99761 * 0.27560 * 18 17 16 26 26 C 1.37742 * 119.99292 * 359.42655 * 25 18 17 27 27 C 1.37986 * 119.93908 * 270.32728 * 10 9 7 28 28 H 0.97005 * 119.99403 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47453 * 59.99734 * 9 7 2 30 30 H 1.09004 * 109.47256 * 299.99977 * 9 7 2 31 31 H 1.08004 * 119.87391 * 0.02930 * 11 10 9 32 32 H 1.07997 * 119.94376 * 179.97438 * 12 11 10 33 33 H 1.07995 * 120.06596 * 179.97438 * 13 12 11 34 34 H 1.07995 * 119.99500 * 359.97384 * 16 15 14 35 35 H 1.07994 * 120.00215 * 180.02562 * 17 16 15 36 36 H 1.08000 * 120.46583 * 359.97438 * 20 19 18 37 37 H 1.07996 * 120.74689 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.30972 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.55317 * 179.72852 * 23 22 21 40 40 H 1.07996 * 119.99921 * 179.69615 * 25 18 17 41 41 H 1.08005 * 120.00028 * 180.31892 * 26 25 18 42 42 H 1.07995 * 120.06100 * 359.96795 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.6788 -4.1695 1.1995 12 6 3.5778 -5.2205 1.2071 13 6 4.0330 -5.7514 0.0171 14 6 3.5845 -5.2268 -1.1936 15 6 4.0694 -5.7933 -2.4756 16 6 4.9756 -6.8534 -2.4709 17 6 5.4256 -7.3800 -3.6615 18 6 4.9755 -6.8527 -4.8716 19 6 5.4594 -7.4198 -6.1532 20 6 5.0055 -6.8888 -7.3593 21 6 5.4657 -7.4290 -8.5473 22 6 6.3656 -8.4843 -8.4906 23 6 6.7695 -8.9657 -7.2592 24 7 6.3199 -8.4297 -6.1426 25 6 4.0741 -5.7884 -4.8762 26 6 3.6195 -5.2659 -3.6855 27 6 2.6827 -4.1637 -1.1952 28 1 -0.4849 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 2.3256 -3.7569 2.1330 32 1 3.9250 -5.6260 2.1459 33 1 4.7353 -6.5718 0.0242 34 1 5.3244 -7.2614 -1.5338 35 1 6.1270 -8.2012 -3.6579 36 1 4.3038 -6.0679 -7.3667 37 1 5.1323 -7.0384 -9.4973 38 1 6.7432 -8.9281 -9.3999 39 1 7.4662 -9.7895 -7.2117 40 1 3.7293 -5.3768 -5.8132 41 1 2.9175 -4.4451 -3.6890 42 1 2.3355 -3.7501 -2.1304 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241972908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:45 Heat of formation + Delta-G solvation = 58.577009 kcal Electronic energy + Delta-G solvation = -23276.585046 eV Core-core repulsion = 19956.825813 eV Total energy + Delta-G solvation = -3319.759232 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.34592 -40.55380 -39.15472 -35.61456 -34.41366 -33.50776 -32.97484 -32.21521 -31.62265 -29.45161 -28.74673 -25.49576 -25.30402 -24.76825 -23.44278 -22.93482 -21.85797 -21.08375 -18.75803 -18.51121 -17.58565 -17.24261 -17.03026 -16.57659 -16.46891 -16.11783 -15.46329 -15.13767 -15.06960 -14.95817 -14.61089 -14.57740 -14.37040 -14.11291 -13.92955 -13.77731 -13.30837 -13.20202 -12.88859 -12.80600 -12.64182 -12.45370 -12.36834 -11.98435 -11.73931 -11.58628 -11.27147 -11.02769 -10.76383 -10.62789 -10.41030 -9.93906 -9.84479 -9.49691 -8.69567 -8.22027 -6.35192 -0.63282 0.27576 0.38660 0.46653 0.63958 1.15716 1.37890 1.38618 1.52154 2.38022 2.61504 3.03371 3.08644 3.16923 3.25116 3.61842 3.72293 3.91120 3.99269 4.03871 4.13471 4.18574 4.21936 4.27210 4.36671 4.47827 4.49937 4.59400 4.61726 4.77218 4.83562 4.88349 5.03498 5.07145 5.17722 5.23118 5.26577 5.33686 5.34890 5.41250 5.41767 5.55761 5.64096 5.72779 5.79511 5.84489 5.95760 6.06841 6.10955 6.24945 6.77379 7.01577 7.33393 8.87500 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.002549 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.340583 B =10983.280167 C =12177.776689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.052 0.948 9 C 0.057 3.943 10 C -0.066 4.066 11 C -0.133 4.133 12 C -0.112 4.112 13 C -0.126 4.126 14 C -0.059 4.059 15 C -0.037 4.037 16 C -0.117 4.117 17 C -0.084 4.084 18 C -0.066 4.066 19 C 0.145 3.855 20 C -0.174 4.174 21 C -0.075 4.075 22 C -0.172 4.172 23 C 0.089 3.911 24 N -0.507 5.507 25 C -0.096 4.096 26 C -0.128 4.128 27 C -0.123 4.123 28 H 0.266 0.734 29 H 0.002 0.998 30 H 0.005 0.995 31 H 0.116 0.884 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.180 0.820 40 H 0.149 0.851 41 H 0.127 0.873 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.512 -18.755 -15.153 27.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.020 3.980 10 C -0.066 4.066 11 C -0.151 4.151 12 C -0.130 4.130 13 C -0.144 4.144 14 C -0.059 4.059 15 C -0.038 4.038 16 C -0.134 4.134 17 C -0.103 4.103 18 C -0.067 4.067 19 C 0.011 3.989 20 C -0.193 4.193 21 C -0.100 4.100 22 C -0.191 4.191 23 C -0.069 4.069 24 N -0.217 5.217 25 C -0.115 4.115 26 C -0.146 4.146 27 C -0.141 4.141 28 H 0.075 0.925 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.134 0.866 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.183 0.817 38 H 0.185 0.815 39 H 0.197 0.803 40 H 0.166 0.834 41 H 0.145 0.855 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.657 -18.985 -14.367 27.447 hybrid contribution -0.553 1.632 -0.566 1.814 sum 13.104 -17.353 -14.933 26.378 Atomic orbital electron populations 1.70085 1.07615 1.27899 1.51323 1.25918 0.95778 1.03066 0.94593 0.85402 0.78866 0.78782 0.78052 1.19088 1.20058 1.20038 1.21373 0.92964 0.91217 1.50879 0.92951 1.18102 0.92873 0.91158 0.95871 1.20357 0.97169 0.95285 0.93789 1.21267 0.98990 0.97540 0.97313 1.21329 0.96640 0.95770 0.99250 1.21416 1.00957 1.01089 0.90935 1.18914 0.97625 0.96140 0.93251 1.19051 0.96817 0.95949 0.91955 1.21381 0.96993 0.95785 0.99290 1.21307 0.98699 0.99350 0.90902 1.18751 0.98903 0.97160 0.91913 1.19868 0.93734 0.92685 0.92651 1.22385 1.02123 1.02190 0.92649 1.21975 0.94442 0.94539 0.99081 1.22590 0.98507 0.97730 1.00318 1.23258 0.97488 0.98568 0.87560 1.67581 1.10883 1.09955 1.33269 1.21290 0.96267 0.95268 0.98635 1.21346 1.00696 1.00588 0.91925 1.21128 0.98609 0.96812 0.97587 0.92528 0.97930 0.97682 0.86609 0.82940 0.82962 0.83414 0.84078 0.83260 0.81732 0.81510 0.80264 0.83353 0.85527 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.53 -30.52 9.09 25.60 0.23 -30.29 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.06 3.10 5.10 29.10 0.15 3.25 16 10 C -0.07 -2.99 5.06 -19.90 -0.10 -3.09 16 11 C -0.13 -5.21 9.69 22.31 0.22 -4.99 16 12 C -0.11 -3.45 10.03 22.24 0.22 -3.23 16 13 C -0.13 -3.72 9.43 22.49 0.21 -3.51 16 14 C -0.06 -2.01 5.88 -20.05 -0.12 -2.13 16 15 C -0.04 -1.12 5.88 -20.01 -0.12 -1.23 16 16 C -0.12 -2.93 9.41 22.45 0.21 -2.72 16 17 C -0.08 -2.06 9.56 22.45 0.21 -1.84 16 18 C -0.07 -1.64 5.88 -20.02 -0.12 -1.76 16 19 C 0.15 3.26 6.73 41.96 0.28 3.54 16 20 C -0.17 -2.98 9.46 22.58 0.21 -2.77 16 21 C -0.07 -0.91 10.17 22.44 0.23 -0.68 16 22 C -0.17 -1.90 10.11 22.41 0.23 -1.67 16 23 C 0.09 1.34 11.17 84.71 0.95 2.29 16 24 N -0.51 -11.11 9.42 -184.87 -1.74 -12.86 16 25 C -0.10 -2.32 9.40 22.45 0.21 -2.11 16 26 C -0.13 -3.66 9.41 22.44 0.21 -3.44 16 27 C -0.12 -5.03 9.08 22.49 0.20 -4.82 16 28 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 29 H 0.00 0.14 8.09 -2.39 -0.02 0.12 16 30 H 0.00 0.28 8.09 -2.39 -0.02 0.26 16 31 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 33 H 0.15 3.30 6.19 -2.91 -0.02 3.29 16 34 H 0.15 2.96 6.19 -2.91 -0.02 2.94 16 35 H 0.14 3.17 7.52 -2.91 -0.02 3.14 16 36 H 0.15 2.06 6.18 -2.91 -0.02 2.04 16 37 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 39 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.15 2.75 6.17 -2.91 -0.02 2.73 16 41 H 0.13 3.70 6.19 -2.91 -0.02 3.68 16 42 H 0.11 4.62 6.20 -2.91 -0.02 4.60 16 Total: -1.00 -71.64 356.71 5.60 -66.04 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 1.04 Total: 16.61 kcal Atomic # 6 Polarization: -64.48 SS G_CDS: 3.99 Total: -60.49 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -1.46 Total: -68.91 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.64 5.60 -66.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241972908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.613 kcal (2) G-P(sol) polarization free energy of solvation -71.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds