Wall clock time and date at job start Tue Mar 31 2020 11:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36231 * 119.94193 * 2 1 4 4 C 1.40939 * 119.88209 * 179.70527 * 3 2 1 5 5 C 1.40985 * 120.11312 * 180.29642 * 4 3 2 6 6 H 1.08004 * 119.99575 * 204.87160 * 5 4 3 7 7 C 1.40017 * 120.00000 * 24.87139 * 5 4 3 8 8 N 1.30786 * 120.00082 * 17.79658 * 7 5 4 9 9 Si 1.86804 * 119.99904 * 197.79105 * 7 5 4 10 10 H 1.48498 * 109.47235 * 60.00375 * 9 7 5 11 11 H 1.48506 * 109.46597 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47132 * 299.99940 * 9 7 5 13 13 C 1.40977 * 119.77759 * 0.59084 * 4 3 2 14 14 C 1.36200 * 119.87668 * 359.45344 * 13 4 3 15 15 C 1.39990 * 119.94084 * 180.02562 * 2 1 3 16 16 C 1.47846 * 119.88584 * 0.02562 * 15 2 1 17 17 C 1.39755 * 120.01991 * 309.70040 * 16 15 2 18 18 C 1.37628 * 119.97618 * 179.70216 * 17 16 15 19 19 C 1.39566 * 120.02162 * 0.59523 * 18 17 16 20 20 C 1.48203 * 119.97961 * 179.70091 * 19 18 17 21 21 C 1.39417 * 119.73413 * 359.71096 * 20 19 18 22 22 C 1.38389 * 119.06148 * 179.75390 * 21 20 19 23 23 C 1.38798 * 118.51907 * 0.50729 * 22 21 20 24 24 C 1.38280 * 119.37407 * 359.73348 * 23 22 21 25 25 N 1.31742 * 120.90367 * 0.02562 * 24 23 22 26 26 C 1.39573 * 120.04574 * 359.68071 * 19 18 17 27 27 C 1.37633 * 120.01774 * 0.02562 * 26 19 18 28 28 H 1.08997 * 109.46758 * 269.97664 * 1 2 3 29 29 H 1.09001 * 109.46740 * 29.98150 * 1 2 3 30 30 H 1.09000 * 109.46744 * 149.97647 * 1 2 3 31 31 H 1.08002 * 120.06058 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00377 * 180.02562 * 8 7 5 33 33 H 1.07996 * 120.06174 * 179.72581 * 13 4 3 34 34 H 1.08007 * 119.94016 * 180.25652 * 14 13 4 35 35 H 1.08000 * 120.01012 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.98724 * 180.27858 * 18 17 16 37 37 H 1.08001 * 120.46774 * 359.97438 * 21 20 19 38 38 H 1.08000 * 120.74210 * 180.23803 * 22 21 20 39 39 H 1.07996 * 120.31049 * 179.71007 * 23 22 21 40 40 H 1.08003 * 119.55050 * 179.97438 * 24 23 22 41 41 H 1.07995 * 119.99618 * 180.02562 * 26 19 18 42 42 H 1.07998 * 120.00997 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1805 0.0000 4 6 3.5964 1.1790 0.0063 5 6 4.3049 2.3979 0.0126 6 1 5.3117 2.4391 -0.3762 7 6 3.7034 3.5547 0.5230 8 7 2.6537 3.4589 1.2971 9 14 4.4005 5.2349 0.0982 10 1 4.3612 5.4296 -1.3734 11 1 3.5894 6.2887 0.7593 12 1 5.8052 5.3222 0.5718 13 6 4.2953 -0.0453 -0.0001 14 6 3.6060 -1.2200 -0.0010 15 6 2.2057 -1.2131 -0.0005 16 6 1.4626 -2.4912 -0.0017 17 6 0.4426 -2.7078 0.9288 18 6 -0.2527 -3.8955 0.9230 19 6 0.0689 -4.8884 -0.0037 20 6 -0.6760 -6.1696 -0.0048 21 6 -1.6925 -6.3793 0.9260 22 6 -2.3825 -7.5788 0.9091 23 6 -2.0264 -8.5350 -0.0318 24 6 -1.0042 -8.2625 -0.9224 25 7 -0.3663 -7.1103 -0.8883 26 6 1.0913 -4.6753 -0.9297 27 6 1.7837 -3.4859 -0.9293 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6470 2.1158 -0.0004 32 1 2.2367 4.2603 1.6503 33 1 5.3752 -0.0517 0.0002 34 1 4.1404 -2.1586 -0.0017 35 1 0.1971 -1.9417 1.6493 36 1 -1.0440 -4.0613 1.6390 37 1 -1.9404 -5.6150 1.6477 38 1 -3.1774 -7.7684 1.6152 39 1 -2.5424 -9.4830 -0.0678 40 1 -0.7245 -9.0046 -1.6555 41 1 1.3392 -5.4440 -1.6466 42 1 2.5745 -3.3210 -1.6462 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241974020.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:03 Heat of formation + Delta-G solvation = 64.917188 kcal Electronic energy + Delta-G solvation = -23754.096701 eV Core-core repulsion = 20434.612400 eV Total energy + Delta-G solvation = -3319.484301 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.31386 -38.88280 -37.34512 -34.20306 -32.81261 -32.49414 -31.77327 -30.41371 -30.20188 -28.33193 -25.92754 -25.45573 -23.89798 -23.39900 -21.78932 -21.32758 -20.27876 -19.53985 -17.52985 -17.17627 -16.29195 -15.98360 -15.82330 -15.28403 -14.41607 -14.31961 -14.15901 -13.96383 -13.72627 -13.57790 -13.32325 -13.08421 -12.75807 -12.55090 -12.19536 -12.12486 -11.84718 -11.71700 -11.44742 -11.36716 -11.16038 -10.93374 -10.77986 -10.53188 -10.26963 -10.06642 -9.70897 -9.64940 -9.50796 -9.41660 -9.20344 -8.55219 -8.02981 -7.44208 -7.15660 -6.88724 -4.43986 0.61939 1.15442 1.85608 1.89851 2.71452 2.99358 3.01576 3.04482 3.13908 3.73909 3.82678 4.15763 4.31847 4.54097 4.60395 4.69750 4.92415 4.99079 5.23733 5.40555 5.40880 5.55381 5.61487 5.64742 5.81190 5.89864 6.01956 6.02675 6.08539 6.09390 6.29287 6.38019 6.38811 6.51587 6.55186 6.64406 6.80205 6.85939 6.90478 6.93119 7.06387 7.24725 7.30447 7.38396 7.54914 7.84396 7.92488 7.96121 8.06257 8.19027 8.51415 8.75526 8.87318 10.02381 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.039627 B = 0.002401 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.414030 B =11657.074537 C =12117.662539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.045 4.045 3 C -0.169 4.169 4 C 0.119 3.881 5 C -0.451 4.451 6 H 0.080 0.920 7 C 0.075 3.925 8 N -0.781 5.781 9 Si 0.910 3.090 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.264 1.264 13 C -0.233 4.233 14 C -0.060 4.060 15 C -0.210 4.210 16 C 0.040 3.960 17 C -0.132 4.132 18 C -0.093 4.093 19 C -0.096 4.096 20 C 0.190 3.810 21 C -0.173 4.173 22 C -0.072 4.072 23 C -0.192 4.192 24 C 0.105 3.895 25 N -0.485 5.485 26 C -0.070 4.070 27 C -0.139 4.139 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.119 0.881 32 H 0.284 0.716 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.154 0.846 41 H 0.126 0.874 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.899 -14.497 -0.458 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.046 4.046 3 C -0.188 4.188 4 C 0.117 3.883 5 C -0.479 4.479 6 H 0.098 0.902 7 C -0.145 4.145 8 N -0.405 5.405 9 Si 0.734 3.266 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.188 1.188 13 C -0.252 4.252 14 C -0.079 4.079 15 C -0.211 4.211 16 C 0.040 3.960 17 C -0.150 4.150 18 C -0.112 4.112 19 C -0.097 4.097 20 C 0.055 3.945 21 C -0.193 4.193 22 C -0.098 4.098 23 C -0.212 4.212 24 C -0.053 4.053 25 N -0.194 5.194 26 C -0.089 4.089 27 C -0.157 4.157 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.144 0.856 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.402 -14.199 -0.900 16.523 hybrid contribution -0.424 0.549 0.604 0.920 sum -8.825 -13.650 -0.296 16.257 Atomic orbital electron populations 1.20786 0.93812 1.00931 1.00719 1.19225 0.93727 0.92737 0.98868 1.20856 0.94255 0.96142 1.07574 1.17691 0.92077 0.92095 0.86462 1.19626 1.01178 0.92552 1.34573 0.90164 1.25998 0.94218 1.01714 0.92558 1.69803 1.17628 1.31961 1.21079 0.86328 0.79928 0.80233 0.80096 1.18641 1.20198 1.18848 1.20651 0.97786 0.92547 1.14257 1.20295 0.92590 0.96536 0.98442 1.17928 0.92375 0.89968 1.20822 1.19147 0.92411 0.93013 0.91475 1.21279 0.97308 0.96861 0.99550 1.21011 0.99281 0.93220 0.97701 1.18323 0.99284 0.92069 1.00037 1.19932 0.91933 0.92510 0.90154 1.22140 0.97662 0.98661 1.00826 1.21506 0.98073 0.92966 0.97218 1.22110 1.00295 1.00781 0.97993 1.22715 0.91937 0.93756 0.96896 1.67685 1.27765 1.01485 1.22459 1.21111 0.93953 0.96737 0.97098 1.21317 1.01148 0.93531 0.99736 0.92538 0.92966 0.92731 0.86316 0.90512 0.88845 0.89201 0.85771 0.86459 0.84564 0.84972 0.85096 0.82873 0.85580 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 8.43 36.01 0.30 -1.69 16 2 C -0.05 -1.02 5.83 -104.69 -0.61 -1.63 16 3 C -0.17 -4.24 8.26 -39.28 -0.32 -4.56 16 4 C 0.12 3.09 5.57 -106.80 -0.60 2.50 16 5 C -0.45 -11.52 9.03 -37.88 -0.34 -11.87 16 6 H 0.08 1.96 7.91 -52.48 -0.42 1.55 16 7 C 0.07 1.80 5.13 -17.33 -0.09 1.71 16 8 N -0.78 -19.35 10.96 55.55 0.61 -18.75 16 9 Si 0.91 17.91 29.60 -169.99 -5.03 12.88 16 10 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 11 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 12 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 13 C -0.23 -5.59 9.73 -39.28 -0.38 -5.97 16 14 C -0.06 -1.34 9.43 -39.64 -0.37 -1.71 16 15 C -0.21 -4.55 5.49 -104.64 -0.57 -5.12 16 16 C 0.04 0.75 4.71 -104.84 -0.49 0.26 16 17 C -0.13 -2.22 7.87 -39.24 -0.31 -2.53 16 18 C -0.09 -1.37 9.40 -39.31 -0.37 -1.74 16 19 C -0.10 -1.48 5.88 -104.81 -0.62 -2.09 16 20 C 0.19 2.65 6.73 -82.95 -0.56 2.09 16 21 C -0.17 -1.96 9.46 -39.09 -0.37 -2.33 16 22 C -0.07 -0.66 10.16 -39.32 -0.40 -1.06 16 23 C -0.19 -1.69 10.11 -39.36 -0.40 -2.09 16 24 C 0.11 1.11 11.17 -17.57 -0.20 0.91 16 25 N -0.48 -6.68 9.42 -9.78 -0.09 -6.77 16 26 C -0.07 -1.12 9.56 -39.30 -0.38 -1.50 16 27 C -0.14 -2.41 9.48 -39.24 -0.37 -2.78 16 28 H 0.06 0.99 7.49 -51.93 -0.39 0.60 16 29 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.05 0.97 6.44 -51.93 -0.33 0.63 16 31 H 0.12 3.07 6.17 -52.49 -0.32 2.74 16 32 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 33 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 34 H 0.09 1.79 8.03 -52.48 -0.42 1.37 16 35 H 0.12 2.05 6.85 -52.49 -0.36 1.69 16 36 H 0.12 1.38 6.16 -52.49 -0.32 1.06 16 37 H 0.14 1.30 6.18 -52.49 -0.32 0.98 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.13 1.90 7.52 -52.49 -0.39 1.50 16 42 H 0.12 2.02 8.03 -52.49 -0.42 1.59 16 LS Contribution 352.12 15.07 5.31 5.31 Total: -1.00 -27.83 352.12 -11.61 -39.44 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -4.95 Total: 9.10 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: -7.45 Total: -41.21 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.52 Total: -25.52 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.83 -11.61 -39.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241974020.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.356 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds