Wall clock time and date at job start Tue Mar 31 2020 11:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36231 * 119.94193 * 2 1 4 4 C 1.40939 * 119.88209 * 179.70527 * 3 2 1 5 5 C 1.40985 * 120.11312 * 180.29642 * 4 3 2 6 6 H 1.08004 * 119.99575 * 204.87160 * 5 4 3 7 7 C 1.40017 * 120.00000 * 24.87139 * 5 4 3 8 8 N 1.30786 * 120.00082 * 17.79658 * 7 5 4 9 9 Si 1.86804 * 119.99904 * 197.79105 * 7 5 4 10 10 H 1.48498 * 109.47235 * 60.00375 * 9 7 5 11 11 H 1.48506 * 109.46597 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47132 * 299.99940 * 9 7 5 13 13 C 1.40977 * 119.77759 * 0.59084 * 4 3 2 14 14 C 1.36200 * 119.87668 * 359.45344 * 13 4 3 15 15 C 1.39990 * 119.94084 * 180.02562 * 2 1 3 16 16 C 1.47846 * 119.88584 * 0.02562 * 15 2 1 17 17 C 1.39755 * 120.01991 * 309.70040 * 16 15 2 18 18 C 1.37628 * 119.97618 * 179.70216 * 17 16 15 19 19 C 1.39566 * 120.02162 * 0.59523 * 18 17 16 20 20 C 1.48203 * 119.97961 * 179.70091 * 19 18 17 21 21 C 1.39417 * 119.73413 * 359.71096 * 20 19 18 22 22 C 1.38389 * 119.06148 * 179.75390 * 21 20 19 23 23 C 1.38798 * 118.51907 * 0.50729 * 22 21 20 24 24 C 1.38280 * 119.37407 * 359.73348 * 23 22 21 25 25 N 1.31742 * 120.90367 * 0.02562 * 24 23 22 26 26 C 1.39573 * 120.04574 * 359.68071 * 19 18 17 27 27 C 1.37633 * 120.01774 * 0.02562 * 26 19 18 28 28 H 1.08997 * 109.46758 * 269.97664 * 1 2 3 29 29 H 1.09001 * 109.46740 * 29.98150 * 1 2 3 30 30 H 1.09000 * 109.46744 * 149.97647 * 1 2 3 31 31 H 1.08002 * 120.06058 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00377 * 180.02562 * 8 7 5 33 33 H 1.07996 * 120.06174 * 179.72581 * 13 4 3 34 34 H 1.08007 * 119.94016 * 180.25652 * 14 13 4 35 35 H 1.08000 * 120.01012 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.98724 * 180.27858 * 18 17 16 37 37 H 1.08001 * 120.46774 * 359.97438 * 21 20 19 38 38 H 1.08000 * 120.74210 * 180.23803 * 22 21 20 39 39 H 1.07996 * 120.31049 * 179.71007 * 23 22 21 40 40 H 1.08003 * 119.55050 * 179.97438 * 24 23 22 41 41 H 1.07995 * 119.99618 * 180.02562 * 26 19 18 42 42 H 1.07998 * 120.00997 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1805 0.0000 4 6 3.5964 1.1790 0.0063 5 6 4.3049 2.3979 0.0126 6 1 5.3117 2.4391 -0.3762 7 6 3.7034 3.5547 0.5230 8 7 2.6537 3.4589 1.2971 9 14 4.4005 5.2349 0.0982 10 1 4.3612 5.4296 -1.3734 11 1 3.5894 6.2887 0.7593 12 1 5.8052 5.3222 0.5718 13 6 4.2953 -0.0453 -0.0001 14 6 3.6060 -1.2200 -0.0010 15 6 2.2057 -1.2131 -0.0005 16 6 1.4626 -2.4912 -0.0017 17 6 0.4426 -2.7078 0.9288 18 6 -0.2527 -3.8955 0.9230 19 6 0.0689 -4.8884 -0.0037 20 6 -0.6760 -6.1696 -0.0048 21 6 -1.6925 -6.3793 0.9260 22 6 -2.3825 -7.5788 0.9091 23 6 -2.0264 -8.5350 -0.0318 24 6 -1.0042 -8.2625 -0.9224 25 7 -0.3663 -7.1103 -0.8883 26 6 1.0913 -4.6753 -0.9297 27 6 1.7837 -3.4859 -0.9293 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6470 2.1158 -0.0004 32 1 2.2367 4.2603 1.6503 33 1 5.3752 -0.0517 0.0002 34 1 4.1404 -2.1586 -0.0017 35 1 0.1971 -1.9417 1.6493 36 1 -1.0440 -4.0613 1.6390 37 1 -1.9404 -5.6150 1.6477 38 1 -3.1774 -7.7684 1.6152 39 1 -2.5424 -9.4830 -0.0678 40 1 -0.7245 -9.0046 -1.6555 41 1 1.3392 -5.4440 -1.6466 42 1 2.5745 -3.3210 -1.6462 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241974020.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:02 Heat of formation + Delta-G solvation = 54.246387 kcal Electronic energy + Delta-G solvation = -23754.559422 eV Core-core repulsion = 20434.612400 eV Total energy + Delta-G solvation = -3319.947022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24746 -40.29508 -38.88034 -35.89668 -34.04486 -33.41790 -33.34650 -31.69768 -31.64480 -29.74688 -27.62796 -27.00285 -24.82906 -24.59886 -23.11877 -22.59534 -21.79256 -21.21091 -19.03347 -18.48308 -17.35009 -17.18261 -16.93030 -16.78325 -15.80798 -15.54971 -15.41738 -15.25326 -15.02442 -15.00739 -14.52541 -14.35862 -14.16886 -13.81477 -13.64616 -13.52571 -13.43505 -13.09884 -12.95744 -12.77180 -12.63322 -12.48593 -12.29457 -12.02947 -11.78106 -11.39649 -11.31319 -11.07773 -10.83385 -10.50683 -10.35321 -9.81562 -9.44246 -9.25432 -8.77132 -8.63262 -6.33216 -0.38782 0.38702 0.58303 0.66236 1.12032 1.19496 1.37539 1.48648 1.55303 2.18540 2.61968 2.81015 3.21438 3.25738 3.68739 3.75919 4.04662 4.08907 4.14438 4.17457 4.24427 4.28659 4.39051 4.41418 4.54286 4.66129 4.68065 4.76796 4.83645 4.89192 4.94007 5.06674 5.10679 5.13815 5.17625 5.24858 5.30469 5.34841 5.44530 5.53132 5.65097 5.70991 5.78975 5.85143 5.96188 6.11285 6.17022 6.27182 6.36070 6.66491 6.89331 7.02374 7.07942 8.27283 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.039627 B = 0.002401 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.414030 B =11657.074537 C =12117.662539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.055 4.055 3 C -0.192 4.192 4 C 0.086 3.914 5 C -0.492 4.492 6 H 0.077 0.923 7 C 0.036 3.964 8 N -0.814 5.814 9 Si 0.983 3.017 10 H -0.261 1.261 11 H -0.265 1.265 12 H -0.259 1.259 13 C -0.251 4.251 14 C -0.068 4.068 15 C -0.198 4.198 16 C 0.006 3.994 17 C -0.130 4.130 18 C -0.089 4.089 19 C -0.084 4.084 20 C 0.151 3.849 21 C -0.174 4.174 22 C -0.073 4.073 23 C -0.175 4.175 24 C 0.088 3.912 25 N -0.514 5.514 26 C -0.080 4.080 27 C -0.139 4.139 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.291 0.709 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.177 0.823 41 H 0.132 0.868 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.473 -17.218 0.129 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.055 4.055 3 C -0.211 4.211 4 C 0.084 3.916 5 C -0.521 4.521 6 H 0.095 0.905 7 C -0.181 4.181 8 N -0.439 5.439 9 Si 0.803 3.197 10 H -0.185 1.185 11 H -0.189 1.189 12 H -0.183 1.183 13 C -0.270 4.270 14 C -0.087 4.087 15 C -0.199 4.199 16 C 0.006 3.994 17 C -0.148 4.148 18 C -0.108 4.108 19 C -0.084 4.084 20 C 0.016 3.984 21 C -0.194 4.194 22 C -0.098 4.098 23 C -0.195 4.195 24 C -0.070 4.070 25 N -0.224 5.224 26 C -0.099 4.099 27 C -0.157 4.157 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.169 0.831 37 H 0.170 0.830 38 H 0.185 0.815 39 H 0.185 0.815 40 H 0.194 0.806 41 H 0.149 0.851 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.977 -16.938 -0.313 20.187 hybrid contribution 0.170 0.908 0.413 1.012 sum -10.807 -16.031 0.101 19.334 Atomic orbital electron populations 1.20749 0.91191 1.01621 1.01813 1.19634 0.95839 0.92271 0.97806 1.20839 0.94216 0.96547 1.09519 1.18046 0.92887 0.93033 0.87651 1.19826 1.01611 0.93805 1.36819 0.90526 1.26807 0.94438 1.05035 0.91776 1.69850 1.18882 1.33241 1.21897 0.85245 0.79322 0.75448 0.79687 1.18520 1.18942 1.18341 1.20823 0.98170 0.92901 1.15121 1.20570 0.93307 0.96716 0.98069 1.18279 0.92438 0.91259 1.17948 1.19013 0.94191 0.92304 0.93887 1.21322 0.96662 0.97801 0.98973 1.21272 0.99558 0.91948 0.98003 1.18669 0.98119 0.92973 0.98687 1.19888 0.93818 0.92348 0.92310 1.22379 0.96787 1.00026 1.00175 1.21972 0.98283 0.91963 0.97620 1.22568 0.98802 1.01892 0.96217 1.23234 0.92422 0.93278 0.98074 1.67589 1.29057 1.02649 1.23088 1.21184 0.94463 0.96355 0.97886 1.21312 1.01217 0.93684 0.99475 0.91109 0.92717 0.91478 0.87844 0.89850 0.88536 0.87202 0.85616 0.83069 0.82999 0.81520 0.81529 0.80590 0.85060 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.65 8.43 71.24 0.60 -3.05 16 2 C -0.06 -2.56 5.83 -19.91 -0.12 -2.68 16 3 C -0.19 -10.14 8.26 22.46 0.19 -9.95 16 4 C 0.09 4.73 5.57 -21.27 -0.12 4.62 16 5 C -0.49 -26.65 9.03 23.37 0.21 -26.44 16 6 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 7 C 0.04 1.80 5.13 85.28 0.44 2.23 16 8 N -0.81 -42.06 10.96 21.84 0.24 -41.82 16 9 Si 0.98 37.81 29.60 68.60 2.03 39.84 16 10 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 11 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 12 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 13 C -0.25 -12.68 9.73 22.47 0.22 -12.47 16 14 C -0.07 -3.14 9.43 22.23 0.21 -2.93 16 15 C -0.20 -8.77 5.49 -19.88 -0.11 -8.88 16 16 C 0.01 0.24 4.71 -20.00 -0.09 0.15 16 17 C -0.13 -4.19 7.87 22.49 0.18 -4.01 16 18 C -0.09 -2.41 9.40 22.45 0.21 -2.20 16 19 C -0.08 -2.41 5.88 -19.99 -0.12 -2.53 16 20 C 0.15 3.86 6.73 41.94 0.28 4.14 16 21 C -0.17 -3.28 9.46 22.59 0.21 -3.07 16 22 C -0.07 -0.99 10.16 22.44 0.23 -0.76 16 23 C -0.18 -2.27 10.11 22.41 0.23 -2.05 16 24 C 0.09 1.57 11.17 84.72 0.95 2.52 16 25 N -0.51 -13.11 9.42 -184.87 -1.74 -14.85 16 26 C -0.08 -2.51 9.56 22.45 0.21 -2.29 16 27 C -0.14 -4.78 9.48 22.49 0.21 -4.57 16 28 H 0.07 2.44 7.49 -2.39 -0.02 2.42 16 29 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 30 H 0.07 2.33 6.44 -2.39 -0.02 2.31 16 31 H 0.10 5.67 6.17 -2.91 -0.02 5.66 16 32 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 33 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.11 4.46 8.03 -2.91 -0.02 4.44 16 35 H 0.13 3.98 6.85 -2.91 -0.02 3.96 16 36 H 0.15 2.99 6.16 -2.91 -0.02 2.97 16 37 H 0.15 2.24 6.18 -2.91 -0.02 2.23 16 38 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.13 3.90 7.52 -2.91 -0.02 3.88 16 42 H 0.12 4.04 8.03 -2.91 -0.02 4.02 16 Total: -1.00 -64.36 352.12 5.59 -58.77 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 1.04 Total: 32.30 kcal Atomic # 6 Polarization: -78.25 SS G_CDS: 4.02 Total: -74.23 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -1.50 Total: -56.68 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -64.36 5.59 -58.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241974020.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.018 kcal (2) G-P(sol) polarization free energy of solvation -64.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds