Wall clock time and date at job start Tue Mar 31 2020 11:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36225 * 120.06219 * 2 1 4 4 C 1.39991 * 120.11723 * 180.25014 * 3 2 1 5 5 C 1.47853 * 119.88460 * 179.75787 * 4 3 2 6 6 C 1.39749 * 120.02304 * 359.44969 * 5 4 3 7 7 C 1.37630 * 119.97517 * 180.25507 * 6 5 4 8 8 C 1.39565 * 120.02524 * 0.04472 * 7 6 5 9 9 C 1.48202 * 119.98094 * 179.97438 * 8 7 6 10 10 C 1.39425 * 119.73292 * 359.70428 * 9 8 7 11 11 C 1.38383 * 119.06033 * 179.73308 * 10 9 8 12 12 C 1.38800 * 118.51892 * 0.53070 * 11 10 9 13 13 C 1.38287 * 119.37593 * 359.73177 * 12 11 10 14 14 N 1.31734 * 120.90000 * 359.97438 * 13 12 11 15 15 C 1.39580 * 120.04093 * 359.95748 * 8 7 6 16 16 C 1.37617 * 120.01995 * 0.02562 * 15 8 7 17 17 C 1.40021 * 120.22730 * 359.48522 * 4 3 2 18 18 C 1.36202 * 120.11425 * 0.23051 * 17 4 3 19 19 C 1.40935 * 120.05481 * 179.71227 * 2 1 3 20 20 C 1.40978 * 120.11636 * 0.02562 * 19 2 1 21 21 H 1.08004 * 119.99828 * 333.70690 * 20 19 2 22 22 C 1.40028 * 120.00284 * 153.70238 * 20 19 2 23 23 N 1.30778 * 119.99782 * 343.38422 * 22 20 19 24 24 Si 1.86799 * 119.99887 * 163.38351 * 22 20 19 25 25 H 1.48500 * 109.47139 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47087 * 120.00232 * 24 22 20 27 27 H 1.48500 * 109.46954 * 240.00223 * 24 22 20 28 28 H 1.09004 * 109.47475 * 270.29195 * 1 2 3 29 29 H 1.09008 * 109.46867 * 30.28182 * 1 2 3 30 30 H 1.08997 * 109.47495 * 150.27992 * 1 2 3 31 31 H 1.08005 * 119.94537 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.01031 * 0.25399 * 6 5 4 33 33 H 1.08006 * 119.98476 * 180.02562 * 7 6 5 34 34 H 1.07994 * 120.46955 * 359.97438 * 10 9 8 35 35 H 1.08006 * 120.74189 * 180.26582 * 11 10 9 36 36 H 1.07994 * 120.31124 * 179.70749 * 12 11 10 37 37 H 1.08002 * 119.55060 * 179.97438 * 13 12 11 38 38 H 1.08003 * 119.98522 * 180.02562 * 15 8 7 39 39 H 1.08001 * 120.01214 * 180.02562 * 16 15 8 40 40 H 1.07997 * 119.94525 * 180.25508 * 17 4 3 41 41 H 1.07999 * 120.05896 * 180.02562 * 18 17 4 42 42 H 0.97003 * 120.00325 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1790 0.0000 4 6 3.5893 1.1804 -0.0053 5 6 4.3247 2.4630 -0.0107 6 6 3.6229 3.6714 -0.0221 7 6 4.3085 4.8647 -0.0324 8 6 5.7041 4.8683 -0.0324 9 6 6.4414 6.1539 -0.0441 10 6 5.7351 7.3559 -0.0613 11 6 6.4376 8.5482 -0.0665 12 6 7.8247 8.5002 -0.0655 13 6 8.4609 7.2724 -0.0538 14 7 7.7685 6.1517 -0.0432 15 6 6.4060 3.6619 -0.0210 16 6 5.7223 2.4676 -0.0104 17 6 4.2954 -0.0288 0.0003 18 6 3.6226 -1.2130 0.0061 19 6 2.2128 -1.2198 0.0061 20 6 1.5116 -2.4428 0.0117 21 1 0.5154 -2.4922 0.4259 22 6 2.1066 -3.5936 -0.5198 23 7 3.1498 -3.4888 -1.3015 24 14 1.4104 -5.2784 -0.1121 25 1 0.2380 -5.1253 0.7864 26 1 0.9897 -5.9563 -1.3645 27 1 2.4504 -6.0928 0.5664 28 1 -0.3634 0.0052 1.0277 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3634 -0.8924 -0.5095 31 1 1.6495 2.1144 0.0004 32 1 2.5429 3.6688 -0.0229 33 1 3.7662 5.7987 -0.0409 34 1 4.6552 7.3565 -0.0666 35 1 5.9180 9.4951 -0.0754 36 1 8.4017 9.4130 -0.0741 37 1 9.5402 7.2317 -0.0534 38 1 7.4860 3.6657 -0.0206 39 1 6.2655 1.5342 -0.0012 40 1 5.3754 -0.0224 0.0003 41 1 4.1681 -2.1451 0.0108 42 1 3.5623 -4.2859 -1.6695 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241974802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:07 Heat of formation + Delta-G solvation = 65.089177 kcal Electronic energy + Delta-G solvation = -23535.486380 eV Core-core repulsion = 20216.009536 eV Total energy + Delta-G solvation = -3319.476843 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25027 -38.78839 -37.46271 -34.16716 -32.91334 -32.54985 -31.50822 -30.69663 -29.96883 -28.32640 -26.33868 -25.13497 -23.84108 -23.39348 -21.89879 -21.50701 -20.16830 -19.24414 -17.59684 -17.35307 -16.22982 -15.99032 -15.72910 -15.33267 -14.49143 -14.34521 -14.09824 -14.09082 -13.42688 -13.39788 -13.19102 -12.96757 -12.80539 -12.74462 -12.30479 -12.09814 -11.88284 -11.68491 -11.34320 -11.28258 -11.20136 -10.92572 -10.74505 -10.55083 -10.47768 -10.00470 -9.66481 -9.61347 -9.47950 -9.39266 -9.25810 -8.52460 -8.21517 -7.52453 -7.07400 -6.89639 -4.48355 0.64918 1.20113 1.80833 1.92589 2.71943 2.95661 2.99815 3.00883 3.12108 3.75632 3.81888 4.21979 4.30687 4.65107 4.66914 4.74097 4.96865 5.04018 5.25633 5.42409 5.46179 5.53153 5.64076 5.67778 5.82655 5.91651 6.05063 6.09983 6.13092 6.14912 6.31630 6.42296 6.52985 6.57080 6.59821 6.67236 6.80440 6.88071 6.90420 6.94022 7.04231 7.13539 7.33877 7.44354 7.50544 7.80313 7.89795 7.98408 8.01510 8.10625 8.43025 8.65889 8.78974 9.92578 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.034374 B = 0.002363 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.381927 B =11844.338987 C =12573.379801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.203 4.203 3 C -0.056 4.056 4 C -0.209 4.209 5 C 0.046 3.954 6 C -0.155 4.155 7 C -0.082 4.082 8 C -0.113 4.113 9 C 0.194 3.806 10 C -0.176 4.176 11 C -0.072 4.072 12 C -0.195 4.195 13 C 0.106 3.894 14 N -0.487 5.487 15 C -0.061 4.061 16 C -0.156 4.156 17 C -0.075 4.075 18 C -0.170 4.170 19 C 0.124 3.876 20 C -0.438 4.438 21 H 0.086 0.914 22 C 0.072 3.928 23 N -0.775 5.775 24 Si 0.911 3.089 25 H -0.258 1.258 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.153 0.847 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.118 0.882 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 14.575 1.560 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.204 4.204 3 C -0.075 4.075 4 C -0.210 4.210 5 C 0.045 3.955 6 C -0.173 4.173 7 C -0.101 4.101 8 C -0.114 4.114 9 C 0.059 3.941 10 C -0.196 4.196 11 C -0.097 4.097 12 C -0.215 4.215 13 C -0.052 4.052 14 N -0.196 5.196 15 C -0.079 4.079 16 C -0.174 4.174 17 C -0.093 4.093 18 C -0.189 4.189 19 C 0.121 3.879 20 C -0.466 4.466 21 H 0.104 0.896 22 C -0.148 4.148 23 N -0.398 5.398 24 Si 0.735 3.265 25 H -0.181 1.181 26 H -0.197 1.197 27 H -0.194 1.194 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.171 0.829 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.111 0.889 41 H 0.136 0.864 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.934 13.632 1.410 14.566 hybrid contribution -0.546 0.142 0.011 0.564 sum 4.388 13.775 1.421 14.526 Atomic orbital electron populations 1.20418 0.93337 1.00727 0.99769 1.19454 0.94562 0.93028 1.13369 1.20291 0.92806 0.96141 0.98219 1.18078 0.92542 0.90606 1.19744 1.19173 0.92564 0.93019 0.90716 1.21068 0.99758 0.91450 1.05043 1.20950 0.92660 0.97795 0.98727 1.18252 0.92362 0.90614 1.10149 1.19935 0.88991 0.92692 0.92475 1.22119 1.01518 0.92656 1.03301 1.21490 0.94294 0.98322 0.95617 1.22088 0.95381 0.99482 1.04554 1.22708 1.00175 0.87648 0.94697 1.67685 1.07791 1.31070 1.13049 1.21075 0.99835 0.91126 0.95900 1.21196 0.93831 0.97704 1.04708 1.20552 0.97487 0.92424 0.98841 1.20977 0.94443 0.96650 1.06853 1.17626 0.91951 0.91735 0.86584 1.19778 1.02056 0.92383 1.32406 0.89608 1.26069 0.94173 1.01919 0.92684 1.69810 1.17496 1.32246 1.20245 0.86202 0.80206 0.80656 0.79472 1.18123 1.19734 1.19450 0.93914 0.94217 0.92009 0.88830 0.85980 0.86608 0.84661 0.85058 0.85174 0.82938 0.85681 0.85927 0.88867 0.86404 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.39 36.01 0.34 -1.34 16 2 C -0.20 -4.67 5.90 -104.33 -0.62 -5.28 16 3 C -0.06 -1.22 8.99 -39.65 -0.36 -1.58 16 4 C -0.21 -4.57 5.90 -104.64 -0.62 -5.18 16 5 C 0.05 0.89 5.88 -104.83 -0.62 0.27 16 6 C -0.16 -2.66 9.41 -39.24 -0.37 -3.03 16 7 C -0.08 -1.25 9.40 -39.31 -0.37 -1.62 16 8 C -0.11 -1.81 5.88 -104.81 -0.62 -2.42 16 9 C 0.19 2.83 6.73 -82.95 -0.56 2.27 16 10 C -0.18 -2.07 9.46 -39.09 -0.37 -2.44 16 11 C -0.07 -0.69 10.16 -39.32 -0.40 -1.09 16 12 C -0.20 -1.81 10.11 -39.36 -0.40 -2.21 16 13 C 0.11 1.17 11.17 -17.58 -0.20 0.97 16 14 N -0.49 -7.00 9.42 -9.78 -0.09 -7.09 16 15 C -0.06 -1.02 9.56 -39.31 -0.38 -1.40 16 16 C -0.16 -2.83 9.41 -39.24 -0.37 -3.20 16 17 C -0.07 -1.70 9.35 -39.65 -0.37 -2.07 16 18 C -0.17 -4.22 8.61 -39.28 -0.34 -4.56 16 19 C 0.12 3.11 5.56 -106.80 -0.59 2.52 16 20 C -0.44 -10.74 8.09 -37.87 -0.31 -11.04 16 21 H 0.09 2.01 6.88 -52.48 -0.36 1.64 16 22 C 0.07 1.68 5.15 -17.33 -0.09 1.59 16 23 N -0.77 -18.78 10.99 55.55 0.61 -18.17 16 24 Si 0.91 17.37 29.59 -169.99 -5.03 12.34 16 25 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 26 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 27 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.69 8.08 -51.92 -0.42 0.27 16 30 H 0.06 1.23 6.77 -51.93 -0.35 0.88 16 31 H 0.09 1.79 6.16 -52.48 -0.32 1.47 16 32 H 0.12 1.94 6.16 -52.49 -0.32 1.61 16 33 H 0.12 1.40 6.16 -52.48 -0.32 1.08 16 34 H 0.14 1.34 6.18 -52.49 -0.32 1.02 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.13 1.98 7.52 -52.48 -0.39 1.59 16 39 H 0.12 2.13 6.16 -52.49 -0.32 1.81 16 40 H 0.09 1.93 6.16 -52.49 -0.32 1.60 16 41 H 0.12 3.00 6.23 -52.49 -0.33 2.67 16 42 H 0.28 6.23 8.30 -40.82 -0.34 5.90 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -27.39 348.53 -11.47 -38.86 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -4.62 Total: 9.65 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: -7.59 Total: -40.85 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.52 Total: -25.26 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.39 -11.47 -38.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241974802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.952 kcal (2) G-P(sol) polarization free energy of solvation -27.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds